CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 92

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp292N92SN272SnonsynaAtaGt53053011079-1081
ORF1ab/nsp292N92NN272NsynaaTaaC32432411079-1081
ORF1ab/nsp292N92HN272HnonsynAatCat14414411079-1081
ORF1ab/nsp292N92delN272deldelAAT---787811079-1081
ORF1ab/nsp292N92DN272DnonsynAatGat464611079-1081
ORF1ab/nsp292N92TN272TnonsynaAtaCt323211079-1081
ORF1ab/nsp292N92KN272KnonsynaaTaaA27210.7777781079-1081
ORF1ab/nsp292N92KN272KnonsynaaTaaG2760.2222221079-1081
ORF1ab/nsp292N92IN272InonsynaAtaTt22210.9545451079-1081
ORF1ab/nsp292N92IN272InonsynaATaTC2210.04545451079-1081
ORF1ab/nsp292N92YN272YnonsynAatTat202011079-1081
ORF1ab/nsp292N92del1N272del1delaaTaa-870.8751079-1081
ORF1ab/nsp292N92del1N272del1delAat-at810.1251079-1081
ORF1ab/nsp292N92del2N272del2delaATa--3311079-1081
ORF1ab/nsp292N92XN272XnonsynAATTGA2211079-1081
ORF1ab/nsp292N92VN272VnonsynAATGTG1111079-1081
ORF1ab/nsp292N92GN272GnonsynAATGGC1111079-1081
ORF1ab/nsp292N92MN272MnonsynaATaTG1111079-1081
ORF1ab/nsp292N92PN272PnonsynAAtCCt1111079-1081

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp292N92SaAtaGt530530All0.000101
ORF1ab/nsp292N92NaaTaaC324324All0.000062
ORF1ab/nsp292N92SaAtaGt295295AY.440.001796
ORF1ab/nsp292N92HAatCat144144All0.000028
ORF1ab/nsp292N92SaAtaGt9595B.1.1.70.000085
ORF1ab/nsp292N92delAAT---7878All0.000015
ORF1ab/nsp292N92HAatCat7070B.1.177.730.039638
ORF1ab/nsp292N92NaaTaaC5353B.1.1.70.000047
ORF1ab/nsp292N92HAatCat5151B.4.40.962264
ORF1ab/nsp292N92DAatGat4646All0.000009
ORF1ab/nsp292N92NaaTaaC4343AY.40.000067
ORF1ab/nsp292N92NaaTaaC4040AY.110.053548
ORF1ab/nsp292N92NaaTaaC3939B.1.4290.000918
ORF1ab/nsp292N92TaAtaCt3232All0.000006
ORF1ab/nsp292N92SaAtaGt3131AY.40.000048
ORF1ab/nsp292N92NaaTaaC3030AY.440.000183
ORF1ab/nsp292N92KaaTaaA2127All0.000004
ORF1ab/nsp292N92KaaTaaG627All0.000001
ORF1ab/nsp292N92SaAtaGt2727B.1.10.00049
ORF1ab/nsp292N92IaAtaTt2122All0.000004
ORF1ab/nsp292N92IaATaTC122All0
ORF1ab/nsp292N92delAAT---2121B.1.1.70.000019
ORF1ab/nsp292N92YAatTat2020All0.000004
ORF1ab/nsp292N92NaaTaaC2020B.1.10.000363
ORF1ab/nsp292N92NaaTaaC1818AY.160.006834
ORF1ab/nsp292N92SaAtaGt1717B.1.617.20.000064
ORF1ab/nsp292N92YAatTat1212B.1.4270.000606
ORF1ab/nsp292N92del1aaTaa-78All0.000001
ORF1ab/nsp292N92del1Aat-at18All0
ORF1ab/nsp292N92TaAtaCt88AY.40.000012
ORF1ab/nsp292N92DAatGat88B.1.177.630.021622
ORF1ab/nsp292N92SaAtaGt77AY.1030.000043
ORF1ab/nsp292N92HAatCat77B0.000895
ORF1ab/nsp292N92DAatGat66B.10.000055
ORF1ab/nsp292N92NaaTaaC66B.1.4270.000303
ORF1ab/nsp292N92TaAtaCt66B.1.617.20.000023
ORF1ab/nsp292N92delAAT---66B.1.617.20.000023
ORF1ab/nsp292N92DAatGat66P.10.000095
ORF1ab/nsp292N92delAAT---55AY.250.00003
ORF1ab/nsp292N92DAatGat55AY.4.2.10.000745
ORF1ab/nsp292N92NaaTaaC55AY.98.10.000242
ORF1ab/nsp292N92delAAT---55B.1.1.330.002104
ORF1ab/nsp292N92NaaTaaC55B.1.617.20.000019
ORF1ab/nsp292N92HAatCat55B.40.011038
ORF1ab/nsp292N92YAatTat44AY.250.000024
ORF1ab/nsp292N92SaAtaGt44AY.290.000063
ORF1ab/nsp292N92NaaTaaC44AY.390.000099
ORF1ab/nsp292N92SaAtaGt44B.10.000037
ORF1ab/nsp292N92delAAT---44B.1.1.3480.003185
ORF1ab/nsp292N92DAatGat44B.1.1.70.000004
ORF1ab/nsp292N92NaaTaaC44B.1.177.570.001124
ORF1ab/nsp292N92NaaTaaC44B.1.20.000035
ORF1ab/nsp292N92SaAtaGt44B.1.3690.001141
ORF1ab/nsp292N92del2aATa--33All0.000001
ORF1ab/nsp292N92SaAtaGt33AY.350.000699
ORF1ab/nsp292N92delAAT---33AY.40.000005
ORF1ab/nsp292N92SaAtaGt33AY.430.000013
ORF1ab/nsp292N92NaaTaaC33AY.430.000013
ORF1ab/nsp292N92delAAT---33AY.430.000013
ORF1ab/nsp292N92SaAtaGt33AY.460.000312
ORF1ab/nsp292N92NaaTaaC33AY.50.000062
ORF1ab/nsp292N92NaaTaaC33AY.60.000123
ORF1ab/nsp292N92SaAtaGt33AY.770.003382
ORF1ab/nsp292N92KaaTaaA33B.10.000027
ORF1ab/nsp292N92IaAtaTt33B.10.000027
ORF1ab/nsp292N92IaAtaTt33B.1.1.70.000003
ORF1ab/nsp292N92DAatGat33B.1.20.000026
ORF1ab/nsp292N92NaaTaaC33B.1.617.10.000387
ORF1ab/nsp292N92del2aATa--220.111111
ORF1ab/nsp292N92delAAT---220.111111
ORF1ab/nsp292N92NaaTaaC220.111111
ORF1ab/nsp292N92XAATTGA220.111111
ORF1ab/nsp292N92XAATTGA22All0
ORF1ab/nsp292N92NaaTaaC22AY.1140.000462
ORF1ab/nsp292N92NaaTaaC22AY.1190.000071
ORF1ab/nsp292N92TaAtaCt22AY.39.10.000079
ORF1ab/nsp292N92KaaTaaA22AY.40.000003
ORF1ab/nsp292N92DAatGat22AY.40.000003
ORF1ab/nsp292N92DAatGat22AY.430.000009
ORF1ab/nsp292N92TaAtaCt22AY.430.000009
ORF1ab/nsp292N92KaaTaaG12AY.430.000004
ORF1ab/nsp292N92KaaTaaA12AY.430.000004
ORF1ab/nsp292N92IaAtaTt22AY.440.000012
ORF1ab/nsp292N92SaAtaGt22AY.470.000062
ORF1ab/nsp292N92SaAtaGt22AY.50.000041
ORF1ab/nsp292N92TaAtaCt22AY.620.000871
ORF1ab/nsp292N92NaaTaaC22AY.940.000885
ORF1ab/nsp292N92IaAtaTt22B0.000256
ORF1ab/nsp292N92NaaTaaC22B.10.000018
ORF1ab/nsp292N92HAatCat22B.10.000018
ORF1ab/nsp292N92DAatGat22B.1.1.2070.002364
ORF1ab/nsp292N92KaaTaaG12B.1.1.70.000001
ORF1ab/nsp292N92KaaTaaA12B.1.1.70.000001
ORF1ab/nsp292N92NaaTaaC22B.1.1.990.047619
ORF1ab/nsp292N92KaaTaaG12B.1.1600.000031
ORF1ab/nsp292N92KaaTaaA12B.1.1600.000031
ORF1ab/nsp292N92NaaTaaC22B.1.1770.000026
ORF1ab/nsp292N92SaAtaGt22B.1.1770.000026
ORF1ab/nsp292N92DAatGat22B.1.177.70.00033
ORF1ab/nsp292N92del1aaTaa-22B.1.20.000018
ORF1ab/nsp292N92SaAtaGt22B.1.20.000018
ORF1ab/nsp292N92delAAT---22B.1.4290.000047
ORF1ab/nsp292N92HAatCat22B.1.617.20.000008
ORF1ab/nsp292N92IaAtaTt22B.1.617.20.000008
ORF1ab/nsp292N92SaAtaGt22C.360.001821
ORF1ab/nsp292N92KaaTaaA22D.20.00015
ORF1ab/nsp292N92delAAT---22N.60.014184
ORF1ab/nsp292N92SaAtaGt22P.10.000032
ORF1ab/nsp292N92NaaTaaC22P.1.140.000096
ORF1ab/nsp292N92delAAT---22P.20.000373
ORF1ab/nsp292N92del1aaTaa-11A0.000387
ORF1ab/nsp292N92KaaTaaA11A.20.000662
ORF1ab/nsp292N92IaAtaTt11A.23.10.000704
ORF1ab/nsp292N92NaaTaaC11AD.20.000219
ORF1ab/nsp292N92VAATGTG11All0
ORF1ab/nsp292N92MaATaTG11All0
ORF1ab/nsp292N92GAATGGC11All0
ORF1ab/nsp292N92PAAtCCt11All0
ORF1ab/nsp292N92SaAtaGt11AY.1020.000027
ORF1ab/nsp292N92NaaTaaC11AY.1020.000027
ORF1ab/nsp292N92delAAT---11AY.1030.000006
ORF1ab/nsp292N92KaaTaaA11AY.1030.000006
ORF1ab/nsp292N92NaaTaaC11AY.1030.000006
ORF1ab/nsp292N92TaAtaCt11AY.1030.000006
ORF1ab/nsp292N92del1Aat-at11AY.1030.000006
ORF1ab/nsp292N92NaaTaaC11AY.1100.000113
ORF1ab/nsp292N92NaaTaaC11AY.130.000161
ORF1ab/nsp292N92HAatCat11AY.190.00114
ORF1ab/nsp292N92NaaTaaC11AY.20.000356
ORF1ab/nsp292N92YAatTat11AY.230.00007
ORF1ab/nsp292N92SaAtaGt11AY.230.00007
ORF1ab/nsp292N92SaAtaGt11AY.250.000006
ORF1ab/nsp292N92NaaTaaC11AY.250.000006
ORF1ab/nsp292N92GAATGGC11AY.250.000006
ORF1ab/nsp292N92NaaTaaC11AY.260.000028
ORF1ab/nsp292N92delAAT---11AY.260.000028
ORF1ab/nsp292N92NaaTaaC11AY.30.00001
ORF1ab/nsp292N92HAatCat11AY.30.00001
ORF1ab/nsp292N92SaAtaGt11AY.330.000067
ORF1ab/nsp292N92SaAtaGt11AY.390.000025
ORF1ab/nsp292N92IaAtaTt11AY.39.10.00004
ORF1ab/nsp292N92SaAtaGt11AY.39.10.00004
ORF1ab/nsp292N92HAatCat11AY.40.000002
ORF1ab/nsp292N92delAAT---11AY.4.50.000107
ORF1ab/nsp292N92HAatCat11AY.430.000004
ORF1ab/nsp292N92TaAtaCt11AY.440.000006
ORF1ab/nsp292N92KaaTaaA11AY.440.000006
ORF1ab/nsp292N92DAatGat11AY.460.000104
ORF1ab/nsp292N92NaaTaaC11AY.46.60.000072
ORF1ab/nsp292N92delAAT---11AY.46.60.000072
ORF1ab/nsp292N92delAAT---11AY.5.30.000337
ORF1ab/nsp292N92YAatTat11AY.540.000095
ORF1ab/nsp292N92KaaTaaA11AY.540.000095
ORF1ab/nsp292N92NaaTaaC11AY.540.000095
ORF1ab/nsp292N92SaAtaGt11AY.590.00053
ORF1ab/nsp292N92SaAtaGt11AY.610.000105
ORF1ab/nsp292N92delAAT---11AY.620.000436
ORF1ab/nsp292N92NaaTaaC11AY.670.000464
ORF1ab/nsp292N92NaaTaaC11AY.70.000196
ORF1ab/nsp292N92TaAtaCt11AY.730.000665
ORF1ab/nsp292N92KaaTaaG11AY.840.000437
ORF1ab/nsp292N92KaaTaaA11AY.90.000068
ORF1ab/nsp292N92NaaTaaC11AY.90.000068
ORF1ab/nsp292N92SaAtaGt11AY.990.001049
ORF1ab/nsp292N92TaAtaCt11B.10.000009
ORF1ab/nsp292N92delAAT---11B.10.000009
ORF1ab/nsp292N92YAatTat11B.10.000009
ORF1ab/nsp292N92KaaTaaA11B.1.10.000018
ORF1ab/nsp292N92HAatCat11B.1.10.000018
ORF1ab/nsp292N92PAAtCCt11B.1.10.000018
ORF1ab/nsp292N92IaATaTC11B.1.1.1370.0125
ORF1ab/nsp292N92SaAtaGt11B.1.1.1610.003534
ORF1ab/nsp292N92DAatGat11B.1.1.1940.00495
ORF1ab/nsp292N92NaaTaaC11B.1.1.2160.00089
ORF1ab/nsp292N92SaAtaGt11B.1.1.250.000569
ORF1ab/nsp292N92DAatGat11B.1.1.3060.000438
ORF1ab/nsp292N92NaaTaaC11B.1.1.3110.000358
ORF1ab/nsp292N92KaaTaaA11B.1.1.4090.002833
ORF1ab/nsp292N92NaaTaaC11B.1.1.4160.000905
ORF1ab/nsp292N92KaaTaaA11B.1.1.4320.001266
ORF1ab/nsp292N92SaAtaGt11B.1.1.5190.00004
ORF1ab/nsp292N92HAatCat11B.1.1.70.000001
ORF1ab/nsp292N92del1aaTaa-11B.1.1.70.000001
ORF1ab/nsp292N92TaAtaCt11B.1.1.70.000001
ORF1ab/nsp292N92MaATaTG11B.1.1.70.000001
ORF1ab/nsp292N92delAAT---11B.1.1.700.000341
ORF1ab/nsp292N92TaAtaCt11B.1.1600.000031
ORF1ab/nsp292N92del1aaTaa-11B.1.1600.000031
ORF1ab/nsp292N92del1aaTaa-11B.1.160.160.000929
ORF1ab/nsp292N92delAAT---11B.1.1770.000013
ORF1ab/nsp292N92TaAtaCt11B.1.1770.000013
ORF1ab/nsp292N92HAatCat11B.1.1770.000013
ORF1ab/nsp292N92delAAT---11B.1.177.40.000211
ORF1ab/nsp292N92delAAT---11B.1.177.510.004566
ORF1ab/nsp292N92delAAT---11B.1.177.540.000606
ORF1ab/nsp292N92KaaTaaG11B.1.177.570.000281
ORF1ab/nsp292N92delAAT---11B.1.177.70.000165
ORF1ab/nsp292N92TaAtaCt11B.1.177.830.001481
ORF1ab/nsp292N92delAAT---11B.1.177.870.000728
ORF1ab/nsp292N92KaaTaaA11B.1.20.000009
ORF1ab/nsp292N92IaAtaTt11B.1.20.000009
ORF1ab/nsp292N92delAAT---11B.1.230.006061
ORF1ab/nsp292N92SaAtaGt11B.1.2340.000132
ORF1ab/nsp292N92NaaTaaC11B.1.2390.001221
ORF1ab/nsp292N92TaAtaCt11B.1.2400.000216
ORF1ab/nsp292N92delAAT---11B.1.258.100.011364
ORF1ab/nsp292N92IaAtaTt11B.1.258.170.000104
ORF1ab/nsp292N92SaAtaGt11B.1.3510.00003
ORF1ab/nsp292N92SaAtaGt11B.1.36.80.001
ORF1ab/nsp292N92NaaTaaC11B.1.3610.001289
ORF1ab/nsp292N92TaAtaCt11B.1.3660.004878
ORF1ab/nsp292N92NaaTaaC11B.1.3890.001002
ORF1ab/nsp292N92KaaTaaA11B.1.3960.000706
ORF1ab/nsp292N92DAatGat11B.1.4270.00005
ORF1ab/nsp292N92SaAtaGt11B.1.4290.000024
ORF1ab/nsp292N92NaaTaaC11B.1.4430.004673
ORF1ab/nsp292N92TaAtaCt11B.1.466.20.000391
ORF1ab/nsp292N92NaaTaaC11B.1.466.20.000391
ORF1ab/nsp292N92SaAtaGt11B.1.466.20.000391
ORF1ab/nsp292N92SaAtaGt11B.1.5050.004386
ORF1ab/nsp292N92DAatGat11B.1.5260.000024
ORF1ab/nsp292N92KaaTaaA11B.1.5260.000024
ORF1ab/nsp292N92SaAtaGt11B.1.5350.028571
ORF1ab/nsp292N92IaAtaTt11B.1.5610.000397
ORF1ab/nsp292N92SaAtaGt11B.1.5760.000907
ORF1ab/nsp292N92IaAtaTt11B.1.5820.000491
ORF1ab/nsp292N92IaAtaTt11B.1.5960.000087
ORF1ab/nsp292N92VAATGTG11B.1.617.20.000004
ORF1ab/nsp292N92DAatGat11B.1.617.20.000004
ORF1ab/nsp292N92delAAT---11B.1.617.30.002985
ORF1ab/nsp292N92delAAT---11B.1.6210.000089
ORF1ab/nsp292N92NaaTaaC11B.1.621.10.000506
ORF1ab/nsp292N92SaAtaGt11B.1.621.10.000506
ORF1ab/nsp292N92YAatTat11B.1.6230.000536
ORF1ab/nsp292N92NaaTaaC11B.1.6370.000073
ORF1ab/nsp292N92del2aATa--11B.340.013699
ORF1ab/nsp292N92SaAtaGt11D.20.000075
ORF1ab/nsp292N92del1aaTaa-11D.20.000075
ORF1ab/nsp292N92IaAtaTt11D.20.000075
ORF1ab/nsp292N92KaaTaaG11N.30.005814
ORF1ab/nsp292N92delAAT---11N.40.004255
ORF1ab/nsp292N92delAAT---11P.1.10.000318
ORF1ab/nsp292N92IaAtaTt11P.1.140.000048
ORF1ab/nsp292N92delAAT---11Q.10.000126
ORF1ab/nsp292N92delAAT---11Q.20.000613
ORF1ab/nsp292N92TaAtaCt11Q.80.000165
ORF1ab/nsp292N92NaaTaaC11Q.80.000165
ORF1ab/nsp292N92delAAT---11U.30.003861