CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 92

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp292N92SN272SnonsynaAtaGt53053011079-1081
ORF1ab/nsp292N92NN272NsynaaTaaC32432411079-1081
ORF1ab/nsp292N92HN272HnonsynAatCat14414411079-1081
ORF1ab/nsp292N92delN272deldelAAT---787811079-1081
ORF1ab/nsp292N92DN272DnonsynAatGat464611079-1081
ORF1ab/nsp292N92TN272TnonsynaAtaCt323211079-1081
ORF1ab/nsp292N92KN272KnonsynaaTaaA27210.7777781079-1081
ORF1ab/nsp292N92KN272KnonsynaaTaaG2760.2222221079-1081
ORF1ab/nsp292N92IN272InonsynaAtaTt22210.9545451079-1081
ORF1ab/nsp292N92IN272InonsynaATaTC2210.04545451079-1081
ORF1ab/nsp292N92YN272YnonsynAatTat202011079-1081
ORF1ab/nsp292N92del1N272del1delaaTaa-870.8751079-1081
ORF1ab/nsp292N92del1N272del1delAat-at810.1251079-1081
ORF1ab/nsp292N92del2N272del2delaATa--3311079-1081
ORF1ab/nsp292N92XN272XnonsynAATTGA2211079-1081
ORF1ab/nsp292N92VN272VnonsynAATGTG1111079-1081
ORF1ab/nsp292N92GN272GnonsynAATGGC1111079-1081
ORF1ab/nsp292N92MN272MnonsynaATaTG1111079-1081
ORF1ab/nsp292N92PN272PnonsynAAtCCt1111079-1081

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp292N92SaAtaGt530530All0.000101
ORF1ab/nsp292N92NaaTaaC324324All0.000062
ORF1ab/nsp292N92SaAtaGt295295AY.440.001796
ORF1ab/nsp292N92HAatCat144144All0.000028
ORF1ab/nsp292N92SaAtaGt9595B.1.1.70.000085
ORF1ab/nsp292N92delAAT---7878All0.000015
ORF1ab/nsp292N92HAatCat7070B.1.177.730.039638
ORF1ab/nsp292N92NaaTaaC5353B.1.1.70.000047
ORF1ab/nsp292N92HAatCat5151B.4.40.962264
ORF1ab/nsp292N92DAatGat4646All0.000009
ORF1ab/nsp292N92NaaTaaC4343AY.40.000067
ORF1ab/nsp292N92NaaTaaC4040AY.110.053548
ORF1ab/nsp292N92NaaTaaC3939B.1.4290.000918
ORF1ab/nsp292N92TaAtaCt3232All0.000006
ORF1ab/nsp292N92SaAtaGt3131AY.40.000048
ORF1ab/nsp292N92NaaTaaC3030AY.440.000183
ORF1ab/nsp292N92KaaTaaA2127All0.000004
ORF1ab/nsp292N92KaaTaaG627All0.000001
ORF1ab/nsp292N92SaAtaGt2727B.1.10.00049
ORF1ab/nsp292N92IaAtaTt2122All0.000004
ORF1ab/nsp292N92IaATaTC122All0
ORF1ab/nsp292N92delAAT---2121B.1.1.70.000019
ORF1ab/nsp292N92YAatTat2020All0.000004
ORF1ab/nsp292N92NaaTaaC2020B.1.10.000363
ORF1ab/nsp292N92NaaTaaC1818AY.160.006834
ORF1ab/nsp292N92SaAtaGt1717B.1.617.20.000064
ORF1ab/nsp292N92YAatTat1212B.1.4270.000606
ORF1ab/nsp292N92del1aaTaa-78All0.000001
ORF1ab/nsp292N92del1Aat-at18All0
ORF1ab/nsp292N92TaAtaCt88AY.40.000012
ORF1ab/nsp292N92DAatGat88B.1.177.630.021622
ORF1ab/nsp292N92SaAtaGt77AY.1030.000043
ORF1ab/nsp292N92HAatCat77B0.000895
ORF1ab/nsp292N92DAatGat66B.10.000055
ORF1ab/nsp292N92NaaTaaC66B.1.4270.000303
ORF1ab/nsp292N92TaAtaCt66B.1.617.20.000023
ORF1ab/nsp292N92delAAT---66B.1.617.20.000023
ORF1ab/nsp292N92DAatGat66P.10.000095
ORF1ab/nsp292N92delAAT---55AY.250.00003
ORF1ab/nsp292N92DAatGat55AY.4.2.10.000745
ORF1ab/nsp292N92NaaTaaC55AY.98.10.000242
ORF1ab/nsp292N92delAAT---55B.1.1.330.002104
ORF1ab/nsp292N92NaaTaaC55B.1.617.20.000019
ORF1ab/nsp292N92HAatCat55B.40.011038
ORF1ab/nsp292N92YAatTat44AY.250.000024
ORF1ab/nsp292N92SaAtaGt44AY.290.000063
ORF1ab/nsp292N92NaaTaaC44AY.390.000099
ORF1ab/nsp292N92SaAtaGt44B.10.000037
ORF1ab/nsp292N92delAAT---44B.1.1.3480.003185
ORF1ab/nsp292N92DAatGat44B.1.1.70.000004
ORF1ab/nsp292N92NaaTaaC44B.1.177.570.001124
ORF1ab/nsp292N92NaaTaaC44B.1.20.000035
ORF1ab/nsp292N92SaAtaGt44B.1.3690.001141
ORF1ab/nsp292N92del2aATa--33All0.000001
ORF1ab/nsp292N92SaAtaGt33AY.350.000699
ORF1ab/nsp292N92delAAT---33AY.40.000005
ORF1ab/nsp292N92SaAtaGt33AY.430.000013
ORF1ab/nsp292N92NaaTaaC33AY.430.000013
ORF1ab/nsp292N92delAAT---33AY.430.000013
ORF1ab/nsp292N92SaAtaGt33AY.460.000312
ORF1ab/nsp292N92NaaTaaC33AY.50.000062
ORF1ab/nsp292N92NaaTaaC33AY.60.000123
ORF1ab/nsp292N92SaAtaGt33AY.770.003382
ORF1ab/nsp292N92KaaTaaA33B.10.000027
ORF1ab/nsp292N92IaAtaTt33B.10.000027
ORF1ab/nsp292N92IaAtaTt33B.1.1.70.000003
ORF1ab/nsp292N92DAatGat33B.1.20.000026
ORF1ab/nsp292N92NaaTaaC33B.1.617.10.000387
ORF1ab/nsp292N92del2aATa--220.111111
ORF1ab/nsp292N92delAAT---220.111111
ORF1ab/nsp292N92NaaTaaC220.111111
ORF1ab/nsp292N92XAATTGA220.111111
ORF1ab/nsp292N92XAATTGA22All0
ORF1ab/nsp292N92NaaTaaC22AY.1140.000462
ORF1ab/nsp292N92NaaTaaC22AY.1190.000071
ORF1ab/nsp292N92TaAtaCt22AY.39.10.000079
ORF1ab/nsp292N92KaaTaaA22AY.40.000003
ORF1ab/nsp292N92DAatGat22AY.40.000003
ORF1ab/nsp292N92DAatGat22AY.430.000009
ORF1ab/nsp292N92TaAtaCt22AY.430.000009
ORF1ab/nsp292N92KaaTaaG12AY.430.000004
ORF1ab/nsp292N92KaaTaaA12AY.430.000004
ORF1ab/nsp292N92IaAtaTt22AY.440.000012
ORF1ab/nsp292N92SaAtaGt22AY.470.000062
ORF1ab/nsp292N92SaAtaGt22AY.50.000041
ORF1ab/nsp292N92TaAtaCt22AY.620.000871
ORF1ab/nsp292N92NaaTaaC22AY.940.000885
ORF1ab/nsp292N92IaAtaTt22B0.000256
ORF1ab/nsp292N92NaaTaaC22B.10.000018
ORF1ab/nsp292N92HAatCat22B.10.000018
ORF1ab/nsp292N92DAatGat22B.1.1.2070.002364
ORF1ab/nsp292N92KaaTaaG12B.1.1.70.000001
ORF1ab/nsp292N92KaaTaaA12B.1.1.70.000001
ORF1ab/nsp292N92NaaTaaC22B.1.1.990.047619
ORF1ab/nsp292N92KaaTaaG12B.1.1600.000031
ORF1ab/nsp292N92KaaTaaA12B.1.1600.000031
ORF1ab/nsp292N92NaaTaaC22B.1.1770.000026
ORF1ab/nsp292N92SaAtaGt22B.1.1770.000026
ORF1ab/nsp292N92DAatGat22B.1.177.70.00033
ORF1ab/nsp292N92del1aaTaa-22B.1.20.000018
ORF1ab/nsp292N92SaAtaGt22B.1.20.000018
ORF1ab/nsp292N92delAAT---22B.1.4290.000047
ORF1ab/nsp292N92HAatCat22B.1.617.20.000008
ORF1ab/nsp292N92IaAtaTt22B.1.617.20.000008
ORF1ab/nsp292N92SaAtaGt22C.360.001821
ORF1ab/nsp292N92KaaTaaA22D.20.00015
ORF1ab/nsp292N92delAAT---22N.60.014184
ORF1ab/nsp292N92SaAtaGt22P.10.000032
ORF1ab/nsp292N92NaaTaaC22P.1.140.000096
ORF1ab/nsp292N92delAAT---22P.20.000373
ORF1ab/nsp292N92del1aaTaa-11A0.000387
ORF1ab/nsp292N92KaaTaaA11A.20.000662
ORF1ab/nsp292N92IaAtaTt11A.23.10.000704
ORF1ab/nsp292N92NaaTaaC11AD.20.000219
ORF1ab/nsp292N92VAATGTG11All0
ORF1ab/nsp292N92MaATaTG11All0
ORF1ab/nsp292N92GAATGGC11All0
ORF1ab/nsp292N92PAAtCCt11All0
ORF1ab/nsp292N92SaAtaGt11AY.1020.000027
ORF1ab/nsp292N92NaaTaaC11AY.1020.000027
ORF1ab/nsp292N92delAAT---11AY.1030.000006
ORF1ab/nsp292N92KaaTaaA11AY.1030.000006
ORF1ab/nsp292N92NaaTaaC11AY.1030.000006
ORF1ab/nsp292N92TaAtaCt11AY.1030.000006
ORF1ab/nsp292N92del1Aat-at11AY.1030.000006
ORF1ab/nsp292N92NaaTaaC11AY.1100.000113
ORF1ab/nsp292N92NaaTaaC11AY.130.000161
ORF1ab/nsp292N92HAatCat11AY.190.00114
ORF1ab/nsp292N92NaaTaaC11AY.20.000356
ORF1ab/nsp292N92YAatTat11AY.230.00007
ORF1ab/nsp292N92SaAtaGt11AY.230.00007
ORF1ab/nsp292N92SaAtaGt11AY.250.000006
ORF1ab/nsp292N92NaaTaaC11AY.250.000006
ORF1ab/nsp292N92GAATGGC11AY.250.000006
ORF1ab/nsp292N92NaaTaaC11AY.260.000028
ORF1ab/nsp292N92delAAT---11AY.260.000028
ORF1ab/nsp292N92NaaTaaC11AY.30.00001
ORF1ab/nsp292N92HAatCat11AY.30.00001
ORF1ab/nsp292N92SaAtaGt11AY.330.000067
ORF1ab/nsp292N92SaAtaGt11AY.390.000025
ORF1ab/nsp292N92IaAtaTt11AY.39.10.00004
ORF1ab/nsp292N92SaAtaGt11AY.39.10.00004
ORF1ab/nsp292N92HAatCat11AY.40.000002
ORF1ab/nsp292N92delAAT---11AY.4.50.000107
ORF1ab/nsp292N92HAatCat11AY.430.000004
ORF1ab/nsp292N92TaAtaCt11AY.440.000006
ORF1ab/nsp292N92KaaTaaA11AY.440.000006
ORF1ab/nsp292N92DAatGat11AY.460.000104
ORF1ab/nsp292N92NaaTaaC11AY.46.60.000072
ORF1ab/nsp292N92delAAT---11AY.46.60.000072
ORF1ab/nsp292N92delAAT---11AY.5.30.000337
ORF1ab/nsp292N92YAatTat11AY.540.000095
ORF1ab/nsp292N92KaaTaaA11AY.540.000095
ORF1ab/nsp292N92NaaTaaC11AY.540.000095
ORF1ab/nsp292N92SaAtaGt11AY.590.00053
ORF1ab/nsp292N92SaAtaGt11AY.610.000105
ORF1ab/nsp292N92delAAT---11AY.620.000436
ORF1ab/nsp292N92NaaTaaC11AY.670.000464
ORF1ab/nsp292N92NaaTaaC11AY.70.000196
ORF1ab/nsp292N92TaAtaCt11AY.730.000665
ORF1ab/nsp292N92KaaTaaG11AY.840.000437
ORF1ab/nsp292N92KaaTaaA11AY.90.000068
ORF1ab/nsp292N92NaaTaaC11AY.90.000068
ORF1ab/nsp292N92SaAtaGt11AY.990.001049
ORF1ab/nsp292N92TaAtaCt11B.10.000009
ORF1ab/nsp292N92delAAT---11B.10.000009
ORF1ab/nsp292N92YAatTat11B.10.000009
ORF1ab/nsp292N92KaaTaaA11B.1.10.000018
ORF1ab/nsp292N92HAatCat11B.1.10.000018
ORF1ab/nsp292N92PAAtCCt11B.1.10.000018
ORF1ab/nsp292N92IaATaTC11B.1.1.1370.0125
ORF1ab/nsp292N92SaAtaGt11B.1.1.1610.003534
ORF1ab/nsp292N92DAatGat11B.1.1.1940.00495
ORF1ab/nsp292N92NaaTaaC11B.1.1.2160.00089
ORF1ab/nsp292N92SaAtaGt11B.1.1.250.000569
ORF1ab/nsp292N92DAatGat11B.1.1.3060.000438
ORF1ab/nsp292N92NaaTaaC11B.1.1.3110.000358
ORF1ab/nsp292N92KaaTaaA11B.1.1.4090.002833
ORF1ab/nsp292N92NaaTaaC11B.1.1.4160.000905
ORF1ab/nsp292N92KaaTaaA11B.1.1.4320.001266
ORF1ab/nsp292N92SaAtaGt11B.1.1.5190.00004
ORF1ab/nsp292N92HAatCat11B.1.1.70.000001
ORF1ab/nsp292N92del1aaTaa-11B.1.1.70.000001
ORF1ab/nsp292N92TaAtaCt11B.1.1.70.000001
ORF1ab/nsp292N92MaATaTG11B.1.1.70.000001
ORF1ab/nsp292N92delAAT---11B.1.1.700.000341
ORF1ab/nsp292N92TaAtaCt11B.1.1600.000031
ORF1ab/nsp292N92del1aaTaa-11B.1.1600.000031
ORF1ab/nsp292N92del1aaTaa-11B.1.160.160.000929
ORF1ab/nsp292N92delAAT---11B.1.1770.000013
ORF1ab/nsp292N92TaAtaCt11B.1.1770.000013
ORF1ab/nsp292N92HAatCat11B.1.1770.000013
ORF1ab/nsp292N92delAAT---11B.1.177.40.000211
ORF1ab/nsp292N92delAAT---11B.1.177.510.004566
ORF1ab/nsp292N92delAAT---11B.1.177.540.000606
ORF1ab/nsp292N92KaaTaaG11B.1.177.570.000281
ORF1ab/nsp292N92delAAT---11B.1.177.70.000165
ORF1ab/nsp292N92TaAtaCt11B.1.177.830.001481
ORF1ab/nsp292N92delAAT---11B.1.177.870.000728
ORF1ab/nsp292N92KaaTaaA11B.1.20.000009
ORF1ab/nsp292N92IaAtaTt11B.1.20.000009
ORF1ab/nsp292N92delAAT---11B.1.230.006061
ORF1ab/nsp292N92SaAtaGt11B.1.2340.000132
ORF1ab/nsp292N92NaaTaaC11B.1.2390.001221
ORF1ab/nsp292N92TaAtaCt11B.1.2400.000216
ORF1ab/nsp292N92delAAT---11B.1.258.100.011364
ORF1ab/nsp292N92IaAtaTt11B.1.258.170.000104
ORF1ab/nsp292N92SaAtaGt11B.1.3510.00003
ORF1ab/nsp292N92SaAtaGt11B.1.36.80.001
ORF1ab/nsp292N92NaaTaaC11B.1.3610.001289
ORF1ab/nsp292N92TaAtaCt11B.1.3660.004878
ORF1ab/nsp292N92NaaTaaC11B.1.3890.001002
ORF1ab/nsp292N92KaaTaaA11B.1.3960.000706
ORF1ab/nsp292N92DAatGat11B.1.4270.00005
ORF1ab/nsp292N92SaAtaGt11B.1.4290.000024
ORF1ab/nsp292N92NaaTaaC11B.1.4430.004673
ORF1ab/nsp292N92TaAtaCt11B.1.466.20.000391
ORF1ab/nsp292N92NaaTaaC11B.1.466.20.000391
ORF1ab/nsp292N92SaAtaGt11B.1.466.20.000391
ORF1ab/nsp292N92SaAtaGt11B.1.5050.004386
ORF1ab/nsp292N92DAatGat11B.1.5260.000024
ORF1ab/nsp292N92KaaTaaA11B.1.5260.000024
ORF1ab/nsp292N92SaAtaGt11B.1.5350.028571
ORF1ab/nsp292N92IaAtaTt11B.1.5610.000397
ORF1ab/nsp292N92SaAtaGt11B.1.5760.000907
ORF1ab/nsp292N92IaAtaTt11B.1.5820.000491
ORF1ab/nsp292N92IaAtaTt11B.1.5960.000087
ORF1ab/nsp292N92VAATGTG11B.1.617.20.000004
ORF1ab/nsp292N92DAatGat11B.1.617.20.000004
ORF1ab/nsp292N92delAAT---11B.1.617.30.002985
ORF1ab/nsp292N92delAAT---11B.1.6210.000089
ORF1ab/nsp292N92NaaTaaC11B.1.621.10.000506
ORF1ab/nsp292N92SaAtaGt11B.1.621.10.000506
ORF1ab/nsp292N92YAatTat11B.1.6230.000536
ORF1ab/nsp292N92NaaTaaC11B.1.6370.000073
ORF1ab/nsp292N92del2aATa--11B.340.013699
ORF1ab/nsp292N92SaAtaGt11D.20.000075
ORF1ab/nsp292N92del1aaTaa-11D.20.000075
ORF1ab/nsp292N92IaAtaTt11D.20.000075
ORF1ab/nsp292N92KaaTaaG11N.30.005814
ORF1ab/nsp292N92delAAT---11N.40.004255
ORF1ab/nsp292N92delAAT---11P.1.10.000318
ORF1ab/nsp292N92IaAtaTt11P.1.140.000048
ORF1ab/nsp292N92delAAT---11Q.10.000126
ORF1ab/nsp292N92delAAT---11Q.20.000613
ORF1ab/nsp292N92TaAtaCt11Q.80.000165
ORF1ab/nsp292N92NaaTaaC11Q.80.000165
ORF1ab/nsp292N92delAAT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.