CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 89 | E89E | E269E | syn | gaA | gaG | 1006 | 1006 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89G | E269G | nonsyn | gAa | gGa | 149 | 149 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89K | E269K | nonsyn | Gaa | Aaa | 126 | 126 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89D | E269D | nonsyn | gaA | gaC | 93 | 92 | 0.989247 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89D | E269D | nonsyn | gaA | gaT | 93 | 1 | 0.0107527 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89del | E269del | del | GAA | --- | 65 | 65 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89A | E269A | nonsyn | gAa | gCa | 50 | 50 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89V | E269V | nonsyn | gAa | gTa | 11 | 11 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89X | E269X | nonsyn | Gaa | Taa | 8 | 8 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89del2 | E269del2 | del | GAa | --a | 3 | 3 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89R | E269R | nonsyn | GAa | CGa | 2 | 2 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89del1 | E269del1 | del | Gaa | -aa | 2 | 2 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89N | E269N | nonsyn | GaA | AaT | 1 | 1 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89T | E269T | nonsyn | GAA | ACG | 1 | 1 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89I | E269I | nonsyn | GAa | ATa | 1 | 1 | 1 | 1070-1072 |
ORF1ab/nsp2 | 89 | E89Q | E269Q | nonsyn | Gaa | Caa | 1 | 1 | 1 | 1070-1072 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1006 | 1006 | All | 0.000192 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 393 | 393 | B.1.588 | 0.357598 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 149 | 149 | All | 0.000028 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 138 | 138 | B.1.1.528 | 0.663462 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 126 | 126 | All | 0.000024 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 112 | 112 | B.1.1.7 | 0.0001 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 92 | 93 | All | 0.000018 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaT | 1 | 93 | All | 0 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 75 | 75 | AY.4.2 | 0.001627 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 65 | 65 | All | 0.000012 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 53 | 53 | B.1 | 0.000485 |
ORF1ab/nsp2 | 89 | E89A | gAa | gCa | 50 | 50 | All | 0.00001 |
ORF1ab/nsp2 | 89 | E89A | gAa | gCa | 41 | 41 | B.1.1.7 | 0.000037 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 30 | 30 | B.1.351 | 0.000892 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 29 | 29 | AY.4 | 0.000045 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 28 | 28 | B.1.595 | 0.007307 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 27 | 27 | AY.43 | 0.00012 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 24 | 24 | AY.4 | 0.000037 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 21 | 21 | B.1.596 | 0.00183 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 13 | 14 | B.1.1.7 | 0.000012 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaT | 1 | 14 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp2 | 89 | E89V | gAa | gTa | 11 | 11 | All | 0.000002 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 11 | 11 | B.1.311 | 0.00302 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 89 | E89X | Gaa | Taa | 8 | 8 | All | 0.000002 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 6 | 6 | B.1.1.34 | 0.078947 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 5 | 5 | B.1.567 | 0.016667 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp2 | 89 | E89V | gAa | gTa | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp2 | 89 | E89V | gAa | gTa | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 4 | 4 | B.1.258.14 | 0.003922 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 89 | E89A | gAa | gCa | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp2 | 89 | E89del2 | GAa | --a | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 3 | 3 | B.1.478 | 0.035294 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 89 | E89X | Gaa | Taa | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 89 | E89R | GAa | CGa | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 89 | E89del1 | Gaa | -aa | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 89 | E89R | GAa | CGa | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 89 | E89A | gAa | gCa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp2 | 89 | E89del2 | GAa | --a | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 2 | 2 | B.1.541 | 0.00885 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 2 | 2 | B.39 | 0.004662 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp2 | 89 | E89I | GAa | ATa | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 89 | E89T | GAA | ACG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 89 | E89N | GaA | AaT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 89 | E89Q | Gaa | Caa | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 89 | E89V | gAa | gTa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 89 | E89X | Gaa | Taa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp2 | 89 | E89X | Gaa | Taa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 89 | E89del1 | Gaa | -aa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 89 | E89del1 | Gaa | -aa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 89 | E89V | gAa | gTa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 89 | E89A | gAa | gCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 89 | E89A | gAa | gCa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 89 | E89del2 | GAa | --a | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 89 | E89A | gAa | gCa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 89 | E89I | GAa | ATa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 89 | E89T | GAA | ACG | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 89 | E89X | Gaa | Taa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | B.1.1.467 | 0.019231 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 89 | E89X | Gaa | Taa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp2 | 89 | E89Q | Gaa | Caa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 89 | E89X | Gaa | Taa | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 89 | E89N | GaA | AaT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | B.53 | 0.011765 |
ORF1ab/nsp2 | 89 | E89X | Gaa | Taa | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | C.25 | 0.125 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp2 | 89 | E89D | gaA | gaC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 89 | E89K | Gaa | Aaa | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp2 | 89 | E89G | gAa | gGa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 89 | E89E | gaA | gaG | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp2 | 89 | E89del | GAA | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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