CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 89

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp289E89EE269EsyngaAgaG1006100611070-1072
ORF1ab/nsp289E89GE269GnonsyngAagGa14914911070-1072
ORF1ab/nsp289E89KE269KnonsynGaaAaa12612611070-1072
ORF1ab/nsp289E89DE269DnonsyngaAgaC93920.9892471070-1072
ORF1ab/nsp289E89DE269DnonsyngaAgaT9310.01075271070-1072
ORF1ab/nsp289E89delE269deldelGAA---656511070-1072
ORF1ab/nsp289E89AE269AnonsyngAagCa505011070-1072
ORF1ab/nsp289E89VE269VnonsyngAagTa111111070-1072
ORF1ab/nsp289E89XE269XnonsynGaaTaa8811070-1072
ORF1ab/nsp289E89del2E269del2delGAa--a3311070-1072
ORF1ab/nsp289E89RE269RnonsynGAaCGa2211070-1072
ORF1ab/nsp289E89del1E269del1delGaa-aa2211070-1072
ORF1ab/nsp289E89NE269NnonsynGaAAaT1111070-1072
ORF1ab/nsp289E89TE269TnonsynGAAACG1111070-1072
ORF1ab/nsp289E89IE269InonsynGAaATa1111070-1072
ORF1ab/nsp289E89QE269QnonsynGaaCaa1111070-1072

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp289E89EgaAgaG10061006All0.000192
ORF1ab/nsp289E89EgaAgaG393393B.1.5880.357598
ORF1ab/nsp289E89GgAagGa149149All0.000028
ORF1ab/nsp289E89EgaAgaG138138B.1.1.5280.663462
ORF1ab/nsp289E89KGaaAaa126126All0.000024
ORF1ab/nsp289E89EgaAgaG112112B.1.1.70.0001
ORF1ab/nsp289E89DgaAgaC9293All0.000018
ORF1ab/nsp289E89DgaAgaT193All0
ORF1ab/nsp289E89GgAagGa7575AY.4.20.001627
ORF1ab/nsp289E89delGAA---6565All0.000012
ORF1ab/nsp289E89EgaAgaG5353B.10.000485
ORF1ab/nsp289E89AgAagCa5050All0.00001
ORF1ab/nsp289E89AgAagCa4141B.1.1.70.000037
ORF1ab/nsp289E89EgaAgaG3030B.1.3510.000892
ORF1ab/nsp289E89EgaAgaG2929AY.40.000045
ORF1ab/nsp289E89EgaAgaG2828B.1.5950.007307
ORF1ab/nsp289E89EgaAgaG2727AY.430.00012
ORF1ab/nsp289E89KGaaAaa2626B.1.617.20.000098
ORF1ab/nsp289E89KGaaAaa2424AY.40.000037
ORF1ab/nsp289E89EgaAgaG2222B.1.20.000194
ORF1ab/nsp289E89GgAagGa2121B.1.1.70.000019
ORF1ab/nsp289E89EgaAgaG2121B.1.5960.00183
ORF1ab/nsp289E89delGAA---1818B.1.1.70.000016
ORF1ab/nsp289E89DgaAgaC1717AY.1030.000106
ORF1ab/nsp289E89DgaAgaC1314B.1.1.70.000012
ORF1ab/nsp289E89DgaAgaT114B.1.1.70.000001
ORF1ab/nsp289E89DgaAgaC1414B.1.617.20.000053
ORF1ab/nsp289E89EgaAgaG1414B.1.617.20.000053
ORF1ab/nsp289E89EgaAgaG1212AY.250.000072
ORF1ab/nsp289E89VgAagTa1111All0.000002
ORF1ab/nsp289E89DgaAgaC1111AY.390.000272
ORF1ab/nsp289E89EgaAgaG1111B.1.3110.00302
ORF1ab/nsp289E89KGaaAaa1010B.1.1.70.000009
ORF1ab/nsp289E89XGaaTaa88All0.000002
ORF1ab/nsp289E89EgaAgaG88AY.4.20.000174
ORF1ab/nsp289E89EgaAgaG88C.370.000929
ORF1ab/nsp289E89GgAagGa77AY.1180.000439
ORF1ab/nsp289E89KGaaAaa77AY.430.000031
ORF1ab/nsp289E89KGaaAaa66AY.1190.000212
ORF1ab/nsp289E89GgAagGa66B.10.000055
ORF1ab/nsp289E89EgaAgaG66B.1.1.340.078947
ORF1ab/nsp289E89EgaAgaG55AY.1030.000031
ORF1ab/nsp289E89EgaAgaG55AY.200.000194
ORF1ab/nsp289E89EgaAgaG55AY.30.00005
ORF1ab/nsp289E89GgAagGa55AY.40.000008
ORF1ab/nsp289E89DgaAgaC55AY.40.000008
ORF1ab/nsp289E89delGAA---55B.1.1.330.002104
ORF1ab/nsp289E89EgaAgaG55B.1.1770.000066
ORF1ab/nsp289E89EgaAgaG55B.1.5670.016667
ORF1ab/nsp289E89EgaAgaG55B.1.5750.001517
ORF1ab/nsp289E89VgAagTa55B.1.617.20.000019
ORF1ab/nsp289E89KGaaAaa44AY.1030.000025
ORF1ab/nsp289E89EgaAgaG44AY.1190.000141
ORF1ab/nsp289E89EgaAgaG44AY.1200.000149
ORF1ab/nsp289E89GgAagGa44AY.250.000024
ORF1ab/nsp289E89DgaAgaC44AY.250.000024
ORF1ab/nsp289E89delGAA---44AY.430.000018
ORF1ab/nsp289E89EgaAgaG44AY.440.000024
ORF1ab/nsp289E89EgaAgaG44AY.470.000124
ORF1ab/nsp289E89DgaAgaC44AY.470.000124
ORF1ab/nsp289E89EgaAgaG44AY.610.000419
ORF1ab/nsp289E89KGaaAaa44B.10.000037
ORF1ab/nsp289E89delGAA---44B.1.1.3480.003185
ORF1ab/nsp289E89VgAagTa44B.1.1.70.000004
ORF1ab/nsp289E89GgAagGa44B.1.258.140.003922
ORF1ab/nsp289E89KGaaAaa44B.1.5770.002749
ORF1ab/nsp289E89delGAA---44B.1.617.20.000015
ORF1ab/nsp289E89AgAagCa44P.1.140.000191
ORF1ab/nsp289E89del2GAa--a33All0.000001
ORF1ab/nsp289E89EgaAgaG33AY.840.001312
ORF1ab/nsp289E89EgaAgaG33B.1.4780.035294
ORF1ab/nsp289E89GgAagGa33B.1.5950.000783
ORF1ab/nsp289E89GgAagGa33P.10.000047
ORF1ab/nsp289E89XGaaTaa220.111111
ORF1ab/nsp289E89RGAaCGa220.111111
ORF1ab/nsp289E89del1Gaa-aa22All0
ORF1ab/nsp289E89RGAaCGa22All0
ORF1ab/nsp289E89EgaAgaG22AY.1020.000053
ORF1ab/nsp289E89AgAagCa22AY.1030.000012
ORF1ab/nsp289E89EgaAgaG22AY.1130.000285
ORF1ab/nsp289E89KGaaAaa22AY.1200.000074
ORF1ab/nsp289E89EgaAgaG22AY.230.000139
ORF1ab/nsp289E89KGaaAaa22AY.290.000032
ORF1ab/nsp289E89KGaaAaa22AY.360.000296
ORF1ab/nsp289E89delGAA---22AY.40.000003
ORF1ab/nsp289E89DgaAgaC22AY.4.20.000043
ORF1ab/nsp289E89DgaAgaC22AY.430.000009
ORF1ab/nsp289E89GgAagGa22AY.430.000009
ORF1ab/nsp289E89KGaaAaa22B.1.10.000036
ORF1ab/nsp289E89DgaAgaC22B.1.10.000036
ORF1ab/nsp289E89KGaaAaa22B.1.1.3180.000604
ORF1ab/nsp289E89del2GAa--a22B.1.1.70.000002
ORF1ab/nsp289E89KGaaAaa22B.1.1770.000026
ORF1ab/nsp289E89KGaaAaa22B.1.20.000018
ORF1ab/nsp289E89EgaAgaG22B.1.2210.000142
ORF1ab/nsp289E89KGaaAaa22B.1.2430.000139
ORF1ab/nsp289E89GgAagGa22B.1.351.20.000605
ORF1ab/nsp289E89delGAA---22B.1.4290.000047
ORF1ab/nsp289E89KGaaAaa22B.1.4290.000047
ORF1ab/nsp289E89KGaaAaa22B.1.5410.00885
ORF1ab/nsp289E89EgaAgaG22B.390.004662
ORF1ab/nsp289E89GgAagGa22C.140.008658
ORF1ab/nsp289E89delGAA---22N.40.008511
ORF1ab/nsp289E89delGAA---22N.60.014184
ORF1ab/nsp289E89KGaaAaa22P.10.000032
ORF1ab/nsp289E89delGAA---22P.20.000373
ORF1ab/nsp289E89EgaAgaG11AD.20.000219
ORF1ab/nsp289E89EgaAgaG11AE.80.000489
ORF1ab/nsp289E89IGAaATa11All0
ORF1ab/nsp289E89TGAAACG11All0
ORF1ab/nsp289E89NGaAAaT11All0
ORF1ab/nsp289E89QGaaCaa11All0
ORF1ab/nsp289E89VgAagTa11AY.1020.000027
ORF1ab/nsp289E89delGAA---11AY.1030.000006
ORF1ab/nsp289E89GgAagGa11AY.1030.000006
ORF1ab/nsp289E89XGaaTaa11AY.1030.000006
ORF1ab/nsp289E89EgaAgaG11AY.1050.000643
ORF1ab/nsp289E89DgaAgaC11AY.1190.000035
ORF1ab/nsp289E89DgaAgaC11AY.120.000316
ORF1ab/nsp289E89GgAagGa11AY.1200.000037
ORF1ab/nsp289E89EgaAgaG11AY.1210.000135
ORF1ab/nsp289E89KGaaAaa11AY.250.000006
ORF1ab/nsp289E89delGAA---11AY.250.000006
ORF1ab/nsp289E89GgAagGa11AY.270.000065
ORF1ab/nsp289E89EgaAgaG11AY.3.10.000085
ORF1ab/nsp289E89DgaAgaC11AY.350.000233
ORF1ab/nsp289E89KGaaAaa11AY.39.10.00004
ORF1ab/nsp289E89EgaAgaG11AY.39.20.001541
ORF1ab/nsp289E89XGaaTaa11AY.40.000002
ORF1ab/nsp289E89del1Gaa-aa11AY.40.000002
ORF1ab/nsp289E89delGAA---11AY.4.50.000107
ORF1ab/nsp289E89del1Gaa-aa11AY.4.50.000107
ORF1ab/nsp289E89GgAagGa11AY.420.00004
ORF1ab/nsp289E89KGaaAaa11AY.420.00004
ORF1ab/nsp289E89VgAagTa11AY.430.000004
ORF1ab/nsp289E89GgAagGa11AY.440.000006
ORF1ab/nsp289E89AgAagCa11AY.440.000006
ORF1ab/nsp289E89DgaAgaC11AY.440.000006
ORF1ab/nsp289E89KGaaAaa11AY.450.000122
ORF1ab/nsp289E89EgaAgaG11AY.460.000104
ORF1ab/nsp289E89EgaAgaG11AY.46.60.000072
ORF1ab/nsp289E89AgAagCa11AY.46.60.000072
ORF1ab/nsp289E89EgaAgaG11AY.50.000021
ORF1ab/nsp289E89GgAagGa11AY.50.000021
ORF1ab/nsp289E89EgaAgaG11AY.520.000814
ORF1ab/nsp289E89EgaAgaG11AY.60.000041
ORF1ab/nsp289E89KGaaAaa11AY.60.000041
ORF1ab/nsp289E89delGAA---11AY.620.000436
ORF1ab/nsp289E89delGAA---11AY.670.000464
ORF1ab/nsp289E89EgaAgaG11AY.70.000196
ORF1ab/nsp289E89del2GAa--a11AY.70.000196
ORF1ab/nsp289E89AgAagCa11AY.700.000209
ORF1ab/nsp289E89KGaaAaa11AY.75.10.00018
ORF1ab/nsp289E89IGAaATa11AY.840.000437
ORF1ab/nsp289E89KGaaAaa11AY.840.000437
ORF1ab/nsp289E89EgaAgaG11AY.9.20.000037
ORF1ab/nsp289E89EgaAgaG11AY.950.000761
ORF1ab/nsp289E89GgAagGa11AY.970.001701
ORF1ab/nsp289E89KGaaAaa11AY.98.10.000048
ORF1ab/nsp289E89GgAagGa11AY.98.10.000048
ORF1ab/nsp289E89TGAAACG11AY.990.001049
ORF1ab/nsp289E89KGaaAaa11AY.99.20.000092
ORF1ab/nsp289E89XGaaTaa11B.10.000009
ORF1ab/nsp289E89delGAA---11B.10.000009
ORF1ab/nsp289E89DgaAgaC11B.10.000009
ORF1ab/nsp289E89EgaAgaG11B.1.10.000018
ORF1ab/nsp289E89DgaAgaC11B.1.1.1890.001513
ORF1ab/nsp289E89GgAagGa11B.1.1.2220.000204
ORF1ab/nsp289E89DgaAgaC11B.1.1.2770.000759
ORF1ab/nsp289E89DgaAgaC11B.1.1.2860.002899
ORF1ab/nsp289E89KGaaAaa11B.1.1.3030.002762
ORF1ab/nsp289E89EgaAgaG11B.1.1.330.000421
ORF1ab/nsp289E89EgaAgaG11B.1.1.4670.019231
ORF1ab/nsp289E89KGaaAaa11B.1.1.5170.006803
ORF1ab/nsp289E89EgaAgaG11B.1.1.5190.00004
ORF1ab/nsp289E89delGAA---11B.1.1.700.000341
ORF1ab/nsp289E89KGaaAaa11B.1.1390.000733
ORF1ab/nsp289E89DgaAgaC11B.1.160.160.000929
ORF1ab/nsp289E89DgaAgaC11B.1.160.290.004219
ORF1ab/nsp289E89DgaAgaC11B.1.1770.000013
ORF1ab/nsp289E89delGAA---11B.1.1770.000013
ORF1ab/nsp289E89KGaaAaa11B.1.177.160.000664
ORF1ab/nsp289E89EgaAgaG11B.1.177.170.000821
ORF1ab/nsp289E89delGAA---11B.1.177.40.000211
ORF1ab/nsp289E89DgaAgaC11B.1.177.440.000519
ORF1ab/nsp289E89delGAA---11B.1.177.510.004566
ORF1ab/nsp289E89delGAA---11B.1.177.540.000606
ORF1ab/nsp289E89EgaAgaG11B.1.177.70.000165
ORF1ab/nsp289E89delGAA---11B.1.177.70.000165
ORF1ab/nsp289E89EgaAgaG11B.1.177.820.000477
ORF1ab/nsp289E89delGAA---11B.1.177.870.000728
ORF1ab/nsp289E89GgAagGa11B.1.20.000009
ORF1ab/nsp289E89delGAA---11B.1.2210.000071
ORF1ab/nsp289E89delGAA---11B.1.230.006061
ORF1ab/nsp289E89GgAagGa11B.1.2340.000132
ORF1ab/nsp289E89XGaaTaa11B.1.2430.00007
ORF1ab/nsp289E89delGAA---11B.1.258.100.011364
ORF1ab/nsp289E89EgaAgaG11B.1.258.110.000396
ORF1ab/nsp289E89DgaAgaC11B.1.258.170.000104
ORF1ab/nsp289E89DgaAgaC11B.1.3110.000275
ORF1ab/nsp289E89DgaAgaC11B.1.4290.000024
ORF1ab/nsp289E89EgaAgaG11B.1.4290.000024
ORF1ab/nsp289E89KGaaAaa11B.1.5250.000113
ORF1ab/nsp289E89KGaaAaa11B.1.5260.000024
ORF1ab/nsp289E89EgaAgaG11B.1.5410.004425
ORF1ab/nsp289E89QGaaCaa11B.1.6090.000479
ORF1ab/nsp289E89XGaaTaa11B.1.6120.002653
ORF1ab/nsp289E89KGaaAaa11B.1.617.10.000129
ORF1ab/nsp289E89NGaAAaT11B.1.617.20.000004
ORF1ab/nsp289E89delGAA---11B.1.617.30.002985
ORF1ab/nsp289E89delGAA---11B.1.6210.000089
ORF1ab/nsp289E89GgAagGa11B.530.011765
ORF1ab/nsp289E89XGaaTaa11B.6.60.000889
ORF1ab/nsp289E89EgaAgaG11C.250.125
ORF1ab/nsp289E89GgAagGa11C.350.000774
ORF1ab/nsp289E89EgaAgaG11C.36.30.000567
ORF1ab/nsp289E89DgaAgaC11C.370.000116
ORF1ab/nsp289E89KGaaAaa11C.370.000116
ORF1ab/nsp289E89DgaAgaC11D.20.000075
ORF1ab/nsp289E89KGaaAaa11D.20.000075
ORF1ab/nsp289E89GgAagGa11D.50.004975
ORF1ab/nsp289E89DgaAgaC11P.1.170.000162
ORF1ab/nsp289E89KGaaAaa11P.1.17.10.000875
ORF1ab/nsp289E89GgAagGa11P.20.000187
ORF1ab/nsp289E89EgaAgaG11P.20.000187
ORF1ab/nsp289E89delGAA---11Q.10.000126
ORF1ab/nsp289E89EgaAgaG11R.10.00009
ORF1ab/nsp289E89delGAA---11U.30.003861