CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 85 | T85T | T265T | syn | acC | acT | 6095 | 5605 | 0.919606 | 1058-1060 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5605 | 6095 | All | 0.001072 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1751 | 1983 | B.1.1.7 | 0.001568 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 454 | 454 | B.1.111 | 0.53349 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 434 | 445 | B.1.617.2 | 0.001634 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 314 | 385 | AY.4 | 0.000489 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 260 | 266 | AY.43 | 0.001152 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 116 | 207 | AY.44 | 0.000706 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 160 | 168 | B.1 | 0.001466 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 120 | 123 | AY.103 | 0.000745 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 122 | 122 | B.1.234 | 0.016097 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 109 | 109 | B.1.177 | 0.001435 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 90 | 94 | AY.25 | 0.000541 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 90 | 90 | N.5 | 0.159011 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 83 | 85 | P.1 | 0.001308 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 60 | 62 | AY.102 | 0.001591 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 55 | 55 | B.1.1.290 | 1 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 50 | 50 | AY.119 | 0.001765 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 46 | 46 | AY.42 | 0.001851 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 45 | 45 | B.1.1.519 | 0.001787 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 41 | 41 | AY.33 | 0.002738 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 41 | 41 | B.1.177.82 | 0.01957 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 39 | 39 | B.1.243 | 0.002714 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 37 | 37 | AY.34 | 0.003588 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 34 | 34 | AY.14 | 0.002992 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 32 | 34 | B.1.1 | 0.000581 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 28 | 28 | AY.5.3 | 0.009447 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 28 | 28 | B.1.160.16 | 0.026022 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 27 | 27 | B.1.160 | 0.000842 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 24 | 26 | AY.3 | 0.000239 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 26 | 26 | B.1.177.15 | 0.016404 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 25 | 25 | AY.100 | 0.00115 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 25 | 25 | AY.20 | 0.000972 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 24 | 24 | B.1.36 | 0.003502 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 22 | 23 | AY.4.2 | 0.000477 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 23 | 23 | B.1.1.222 | 0.004692 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 23 | 23 | P.2 | 0.004293 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 21 | 21 | AY.23 | 0.001465 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 21 | 21 | C.37 | 0.002437 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 18 | 19 | AY.39 | 0.000445 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 18 | 18 | B.1.1.133 | 0.152542 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 17 | 17 | AY.29 | 0.000268 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 17 | 17 | B.1.177.33 | 0.027961 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 14 | 16 | AY.26 | 0.000396 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 15 | 15 | B.1.177.10 | 0.013169 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 15 | 15 | B.1.177.16 | 0.009967 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 15 | 15 | B.1.621 | 0.001328 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 13 | 14 | B.1.1.214 | 0.000721 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 14 | 14 | B.1.525 | 0.001584 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 9 | 13 | AY.3.1 | 0.000767 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 12 | 13 | AY.75 | 0.000672 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 11 | 12 | AY.98.1 | 0.000533 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 12 | 12 | C.35 | 0.009288 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 11 | 11 | B.1.177.7 | 0.001813 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 11 | 11 | B.1.400 | 0.004719 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 10 | 10 | A.23.1 | 0.007042 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 9 | 10 | AY.61 | 0.000943 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 10 | 10 | AY.67 | 0.004643 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 9 | 9 | AY.74 | 0.001041 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 9 | 9 | B.1.177.69 | 0.013353 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 7 | AY.120 | 0.000149 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 7 | B | 0.000639 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 7 | 7 | B.1.177.74 | 0.106061 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 7 | 7 | B.1.438.1 | 0.000751 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 7 | 7 | B.1.544 | 0.042169 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | AZ.3 | 0.009119 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 6 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | B.1.619.1 | 0.003849 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | AY.7.2 | 0.002796 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | B.1.36.22 | 0.006039 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 5 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 4 | AY.116 | 0.00086 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | C.16 | 0.004242 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 4 | P.1.12 | 0.001452 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 3 | AY.34.1 | 0.00102 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.46.1 | 0.00308 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 3 | AY.68 | 0.000547 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.89 | 0.014706 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | B.1.1.263 | 0.004673 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | B.1.22 | 0.003953 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 3 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 3 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 2 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 2 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.286 | 0.005797 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.344 | 0.021505 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.160.26 | 0.004843 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.23 | 0.012121 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.36.33 | 0.015152 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.45 | 0.007663 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | N.9 | 0.011905 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.160.18 | 0.007299 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.215 | 0.009615 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.463 | 0.008065 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.76 | 0.011364 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|