CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 85 | T85I | T265I | nonsyn | aCc | aTc | 400050 | 399347 | 0.998243 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85I | T265I | nonsyn | aCC | aTT | 400050 | 702 | 0.00175478 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85I | T265I | nonsyn | aCC | aTA | 400050 | 1 | 0.00000249969 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85T | T265T | syn | acC | acT | 6095 | 5605 | 0.919606 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85T | T265T | syn | acC | acA | 6095 | 458 | 0.0751436 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85T | T265T | syn | acC | acG | 6095 | 32 | 0.00525021 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85V | T265V | nonsyn | ACc | GTc | 141 | 137 | 0.971631 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85V | T265V | nonsyn | ACC | GTT | 141 | 4 | 0.0283688 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85A | T265A | nonsyn | Acc | Gcc | 92 | 88 | 0.956522 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85A | T265A | nonsyn | AcC | GcT | 92 | 4 | 0.0434783 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85del | T265del | del | ACC | --- | 76 | 76 | 1 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85N | T265N | nonsyn | aCc | aAc | 70 | 70 | 1 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85S | T265S | nonsyn | Acc | Tcc | 29 | 26 | 0.896552 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85S | T265S | nonsyn | aCc | aGc | 29 | 2 | 0.0689655 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85S | T265S | nonsyn | aCC | aGT | 29 | 1 | 0.0344828 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85L | T265L | nonsyn | ACc | CTc | 15 | 12 | 0.8 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85L | T265L | nonsyn | ACC | CTT | 15 | 2 | 0.133333 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85L | T265L | nonsyn | ACC | CTG | 15 | 1 | 0.0666667 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85M | T265M | nonsyn | aCC | aTG | 3 | 3 | 1 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85R | T265R | nonsyn | aCC | aGG | 2 | 2 | 1 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85P | T265P | nonsyn | Acc | Ccc | 2 | 2 | 1 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85del1 | T265del1 | del | acC | ac- | 2 | 1 | 0.5 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85del1 | T265del1 | del | aCc | a-c | 2 | 1 | 0.5 | 1058-1060 |
ORF1ab/nsp2 | 85 | T85F | T265F | nonsyn | ACc | TTc | 1 | 1 | 1 | 1058-1060 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 399347 | 400050 | All | 0.07638 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 702 | 400050 | All | 0.000134 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTA | 1 | 400050 | All | 0 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 112414 | 112660 | B.1.2 | 0.989847 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 246 | 112660 | B.1.2 | 0.002166 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 42263 | 42360 | B.1.526 | 0.993372 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 97 | 42360 | B.1.526 | 0.00228 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 42267 | 42316 | B.1.429 | 0.994494 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 49 | 42316 | B.1.429 | 0.001153 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 40840 | 40922 | B.1 | 0.374075 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 81 | 40922 | B.1 | 0.000742 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTA | 1 | 40922 | B.1 | 0.000009 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 33039 | 33085 | B.1.351 | 0.982134 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 46 | 33085 | B.1.351 | 0.001367 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 19748 | 19753 | B.1.427 | 0.997223 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 5 | 19753 | B.1.427 | 0.000252 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 13645 | 13653 | B.1.637 | 0.997077 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 8 | 13653 | B.1.637 | 0.000585 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 10858 | 10864 | B.1.596 | 0.946148 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 6 | 10864 | B.1.596 | 0.000523 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5605 | 6095 | All | 0.001072 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 458 | 6095 | All | 0.000088 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 32 | 6095 | All | 0.000006 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3776 | 3777 | B.1.595 | 0.985386 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 3777 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3586 | 3590 | B.1.311 | 0.984624 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 4 | 3590 | B.1.311 | 0.001098 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3477 | 3477 | B.1.369 | 0.991728 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3297 | 3298 | B.1.351.2 | 0.997579 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 3298 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3287 | 3295 | B.1.575 | 0.997269 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 8 | 3295 | B.1.575 | 0.002427 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3165 | 3167 | B.1.497 | 0.996223 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 2 | 3167 | B.1.497 | 0.00063 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2346 | 2346 | B.1.1.7 | 0.0021 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2327 | 2328 | B.1.517 | 0.993595 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 2328 | B.1.517 | 0.000427 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2319 | 2319 | B.1.564 | 0.987649 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1999 | 2000 | B.1.582 | 0.980864 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 2000 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1751 | 1983 | B.1.1.7 | 0.001568 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 220 | 1983 | B.1.1.7 | 0.000197 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 12 | 1983 | B.1.1.7 | 0.000011 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1775 | 1777 | B.1.623 | 0.952253 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 2 | 1777 | B.1.623 | 0.001073 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1632 | 1651 | B.1.351.5 | 0.978417 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 19 | 1651 | B.1.351.5 | 0.011391 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1646 | 1646 | B.1.329 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1441 | 1443 | B.1.577 | 0.990378 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 2 | 1443 | B.1.577 | 0.001375 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1369 | 1369 | B.1.349 | 0.978556 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1231 | 1231 | B.1.422 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1224 | 1228 | B.1.367 | 0.969889 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 4 | 1228 | B.1.367 | 0.00317 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1137 | 1137 | B.1.351.3 | 0.996494 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1128 | 1129 | B.1.509 | 0.976623 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 1129 | B.1.509 | 0.000866 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1102 | 1102 | B.1.1 | 0.019991 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1097 | 1097 | B.1.588 | 0.99818 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 990 | 990 | B.1.375 | 0.811475 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 987 | 988 | B.1.426 | 0.995964 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 988 | B.1.426 | 0.001009 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 970 | 971 | AY.118 | 0.060769 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 971 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 960 | 961 | B.1.428 | 0.979592 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 961 | B.1.428 | 0.00102 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 942 | 943 | B.1.499 | 0.989496 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 943 | B.1.499 | 0.00105 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 898 | 898 | B.1.568 | 0.997778 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 881 | 881 | B.1.371 | 0.988777 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 859 | 859 | B.1.576 | 0.778785 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 801 | 802 | B.1.320 | 0.997509 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 802 | B.1.320 | 0.001245 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 774 | 774 | B.1.361 | 0.997423 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 773 | 773 | B.1.265 | 0.982211 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 761 | 761 | B.1.346 | 0.997379 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 709 | 709 | AY.43 | 0.003141 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 630 | 636 | B.1.362 | 0.970724 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 6 | 636 | B.1.362 | 0.009245 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 634 | 634 | B.1.564.1 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 614 | 614 | B.1.324 | 0.985554 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 569 | 570 | B.1.356 | 0.982729 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 570 | B.1.356 | 0.001727 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 520 | 520 | B.1.587 | 0.986717 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 470 | 505 | B.1.516 | 0.919765 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 35 | 505 | B.1.516 | 0.068493 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 467 | 467 | B.1.298 | 0.987315 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 462 | 463 | B.1.305 | 0.993548 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 463 | B.1.305 | 0.002151 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 463 | 463 | B.1.574 | 0.995699 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 454 | 454 | B.1.111 | 0.53349 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 434 | 445 | B.1.617.2 | 0.001634 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 11 | 445 | B.1.617.2 | 0.000041 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 409 | 409 | B.1.575.1 | 0.997561 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 396 | 396 | B.1.503 | 0.985075 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 386 | 386 | B.1.336 | 0.941463 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 314 | 385 | AY.4 | 0.000489 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 68 | 385 | AY.4 | 0.000106 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 3 | 385 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 381 | 381 | B.1.3 | 0.997382 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 380 | 380 | B.1.448 | 0.997375 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 376 | 376 | B.1.289 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 370 | 370 | B.1.612 | 0.981432 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 340 | 340 | B.1.570 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 339 | 339 | B.1.350 | 0.994135 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 322 | 322 | B.1.319 | 0.981707 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 313 | 313 | B.1.425 | 0.937126 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 306 | 306 | B.1.453 | 0.990291 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 301 | 301 | B.1.433 | 0.961661 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 295 | 295 | B.1.567 | 0.983333 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 278 | 278 | B.1.332 | 0.972028 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 260 | 266 | AY.43 | 0.001152 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 6 | 266 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 264 | 264 | B.1.599 | 0.963504 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 247 | 247 | B.1.39 | 0.964844 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 232 | 232 | B.1.413 | 0.987234 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 230 | 230 | B.1.340 | 0.987124 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 226 | 226 | P.1 | 0.00356 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 223 | 223 | B.1.505 | 0.97807 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 219 | 219 | AY.4 | 0.000341 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 218 | 218 | B.1.541 | 0.964602 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 216 | 217 | AY.3 | 0.002148 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 217 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 209 | 212 | B.1.362.2 | 0.985849 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 3 | 212 | B.1.362.2 | 0.014151 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 211 | 211 | B.1.597 | 0.976852 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 208 | 208 | B.1.575.2 | 1 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 116 | 207 | AY.44 | 0.000706 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 91 | 207 | AY.44 | 0.000554 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 206 | 206 | B.1.590 | 0.936364 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 200 | 200 | B.1.366 | 0.97561 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 198 | 198 | B.1.521 | 0.985075 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 190 | 190 | B.1.517.1 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 189 | 189 | B.1.630 | 0.989529 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 176 | 176 | B.1.337 | 0.98324 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 175 | 175 | B.1.626 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 174 | 174 | B.1.306 | 0.994286 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 171 | 171 | B.1.108 | 0.994186 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 170 | 170 | B.1.595.1 | 0.994152 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 160 | 168 | B.1 | 0.001466 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 5 | 168 | B.1 | 0.000046 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 3 | 168 | B.1 | 0.000027 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 168 | 168 | B.1.605 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 164 | 164 | B.1.301 | 0.970414 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 164 | 164 | B.1.315 | 0.993939 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 163 | 163 | B.1.573 | 0.993902 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 161 | 161 | B.1.606 | 0.96988 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 160 | 160 | B.1.580 | 0.650407 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 152 | 152 | B.1.177.73 | 0.08607 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 152 | 152 | B.1.313 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 148 | 148 | AY.25 | 0.00089 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 145 | 145 | B.1.325 | 1 |
ORF1ab/nsp2 | 85 | T85V | ACc | GTc | 137 | 141 | All | 0.000026 |
ORF1ab/nsp2 | 85 | T85V | ACC | GTT | 4 | 141 | All | 0.000001 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 141 | 141 | B.1.258 | 0.009383 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 141 | 141 | B.1.617.2 | 0.000531 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 140 | 140 | B.1.492 | 0.985915 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 139 | 139 | B.1.411 | 0.514815 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 136 | 137 | B.1.595.4 | 0.992701 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 137 | B.1.595.4 | 0.007299 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 136 | 136 | B.1.177 | 0.001791 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 135 | 135 | B.1.501 | 0.992647 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 133 | 133 | B.1.314 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 131 | 131 | B.1.589 | 0.992424 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 131 | 131 | B.1.632 | 0.879195 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 130 | 130 | B.1.120 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 129 | 129 | AY.46 | 0.013426 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 125 | 125 | B.1.12 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 124 | 124 | B.1.167 | 0.96875 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 120 | 123 | AY.103 | 0.000745 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 2 | 123 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 1 | 123 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 123 | 123 | B.1.370 | 0.984 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 122 | 122 | B.1.234 | 0.016097 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 122 | 122 | B.1.344 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 122 | 122 | B.1.451 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 121 | 121 | B.1.424 | 0.975806 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 120 | 120 | B.1.44 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 118 | 118 | B.1.166 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 116 | 116 | B.1.338 | 1 |
ORF1ab/nsp2 | 85 | T85V | ACc | GTc | 112 | 115 | B.1.596 | 0.009759 |
ORF1ab/nsp2 | 85 | T85V | ACC | GTT | 3 | 115 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 114 | 114 | AY.42 | 0.004586 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 112 | 112 | B.1.118 | 0.751678 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 110 | 110 | B.1.495 | 1 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 109 | 109 | B.1.177 | 0.001435 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 108 | 109 | B.1.234 | 0.01425 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 109 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 103 | 107 | B.1.596.1 | 0.962617 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 4 | 107 | B.1.596.1 | 0.037383 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 105 | 105 | B.1.357 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 104 | 104 | B.1.581 | 0.981132 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 100 | 101 | B.1.571 | 0.970874 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 101 | B.1.571 | 0.009709 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 97 | 97 | AY.7.2 | 0.054251 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 97 | 97 | B.1.423 | 0.989796 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 90 | 94 | AY.25 | 0.000541 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 4 | 94 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 94 | 94 | B.1.119 | 0.989474 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 94 | 94 | B.1.268 | 0.979167 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 94 | 94 | B.1.591 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 94 | 94 | B.1.603 | 1 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 88 | 92 | All | 0.000017 |
ORF1ab/nsp2 | 85 | T85A | AcC | GcT | 4 | 92 | All | 0.000001 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 91 | 91 | B.1.160 | 0.002838 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 91 | 91 | B.1.586 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 90 | 90 | B.1.333 | 0.947368 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 90 | 90 | B.1.372 | 0.989011 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 90 | 90 | N.5 | 0.159011 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 89 | 89 | AY.98.1 | 0.00431 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 89 | 89 | B.1.335 | 0.917526 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 88 | 88 | B.1.435 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 88 | 88 | B.1.593 | 0.956522 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 87 | 87 | B.1.507 | 0.977528 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 86 | 86 | B | 0.010992 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 85 | 85 | B.1.116 | 0.988372 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 85 | 85 | B.1.355 | 0.944444 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 83 | 85 | P.1 | 0.001308 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 1 | 85 | P.1 | 0.000016 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 85 | P.1 | 0.000016 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 84 | 84 | B.1.518 | 0.988235 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 83 | 83 | B.1.429.1 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 83 | 83 | P.1.14 | 0.003967 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 82 | 82 | B.1.579 | 0.921348 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 80 | 80 | B.1.117 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 80 | 80 | B.1.450 | 0.909091 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 79 | 79 | B.1.360 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 79 | 79 | B.1.445 | 0.929412 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 78 | 78 | B.1.293 | 0.975 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 77 | 77 | B.1.1.335 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 77 | 77 | B.1.432 | 0.865169 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 76 | 76 | All | 0.000015 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 76 | 76 | B.1.428.3 | 0.974359 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 75 | 75 | B.1.363 | 0.974026 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 74 | 74 | AY.4.5 | 0.007954 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 74 | 74 | B.1.264 | 0.91358 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 74 | 74 | B.1.302 | 0.986667 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 73 | 73 | B.1.326 | 0.55303 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 73 | 73 | B.1.452 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 72 | 72 | B.1.513 | 1 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 70 | 70 | All | 0.000013 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 69 | 69 | B.1.1.519 | 0.00274 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 68 | 68 | B.1.284 | 0.894737 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 67 | 67 | AY.103 | 0.000416 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 67 | 67 | B.1.485 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 66 | 66 | AY.39 | 0.001631 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 66 | 66 | AY.46.1 | 0.067762 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 66 | 66 | AY.61 | 0.006915 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 66 | 66 | B.1.165 | 0.785714 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 66 | 66 | B.1.240 | 0.014227 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 66 | 66 | B.1.515 | 0.956522 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 66 | 66 | B.1.569 | 0.956522 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 65 | 65 | AY.5.4 | 0.017986 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 60 | 62 | AY.102 | 0.001591 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 2 | 62 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 62 | 62 | B.1.444 | 0.984127 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 59 | 59 | B.1.1.220 | 0.109665 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 59 | 59 | B.1.598 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 58 | 58 | AY.34 | 0.005624 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 58 | 58 | AY.44 | 0.000353 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 55 | 55 | B.1.1.290 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 55 | 55 | B.1.334 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 54 | 54 | B.1.348 | 0.981818 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 54 | 54 | B.1.562 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 53 | 53 | B.1.267 | 0.981481 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 49 | 53 | B.1.604 | 0.844828 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 53 | B.1.604 | 0.068966 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 52 | 52 | B.1.291 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 51 | 51 | B.1.40 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 51 | 51 | B.1.487 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 51 | 51 | B.1.578 | 0.910714 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 51 | 51 | B.6 | 0.046406 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 50 | 50 | AY.119 | 0.001765 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 49 | 50 | B.1.566 | 0.942308 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 50 | B.1.566 | 0.019231 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 49 | 49 | B.1.498 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 48 | 48 | B.1.343 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 48 | 48 | B.1.446 | 0.96 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 47 | 48 | C.37 | 0.005455 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 48 | C.37 | 0.000116 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 47 | 47 | AY.93 | 0.012835 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 46 | 46 | AY.42 | 0.001851 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 45 | 45 | B.1.1.519 | 0.001787 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 45 | 45 | B.1.36 | 0.006566 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 45 | 45 | B.1.437 | 0.9375 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 43 | 43 | AY.71 | 0.020428 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 43 | 43 | B.1.243 | 0.002992 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 43 | 43 | B.1.304 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 43 | 43 | B.1.341 | 0.977273 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 43 | 43 | B.1.359 | 0.977273 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 43 | 43 | B.1.520 | 0.934783 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 43 | 43 | B.1.524 | 0.060478 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 41 | 41 | AY.33 | 0.002738 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 41 | 41 | B.1.177.82 | 0.01957 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 41 | 41 | B.1.616 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 40 | 40 | B.1.115 | 0.869565 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 40 | 40 | B.1.323 | 0.833333 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 40 | 40 | B.1.572 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 39 | 39 | AY.102 | 0.001034 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 39 | 39 | B.1.243 | 0.002714 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 39 | 39 | B.1.493 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 39 | 39 | B.1.508 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 38 | 38 | B.1.206 | 0.030995 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 38 | 38 | B.1.506 | 0.904762 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 38 | 38 | B.1.595.3 | 1 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 37 | 37 | AY.34 | 0.003588 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 37 | 37 | B.1.168 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 37 | 37 | B.1.369.1 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 37 | 37 | B.1.613 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 36 | 36 | AY.119 | 0.001271 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 35 | 35 | AY.75.1 | 0.006311 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 35 | 35 | B.1.585 | 0.972222 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 34 | 34 | AY.14 | 0.002992 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 34 | 34 | AY.33 | 0.00227 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 32 | 34 | B.1.1 | 0.000581 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 2 | 34 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 34 | 34 | B.1.221 | 0.002415 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 34 | 34 | B.1.554 | 0.14978 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 34 | 34 | Q.8 | 0.005607 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 33 | 33 | AY.29 | 0.000521 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 33 | 33 | B.1.287 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 33 | 33 | R.1 | 0.00297 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 32 | 32 | B.1.328 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 32 | 32 | B.1.330 | 0.914286 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 32 | 32 | B.1.504 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 32 | 32 | B.1.525 | 0.003621 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 32 | 32 | B.1.601 | 0.969697 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 31 | 31 | AY.116 | 0.00889 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 31 | 31 | B.1.294 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 31 | 31 | B.1.594 | 0.96875 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 30 | 30 | AY.9.1 | 0.002512 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 30 | 30 | B.1.1.7 | 0.000027 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 30 | 30 | B.1.38 | 0.967742 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 30 | 30 | B.1.428.2 | 1 |
ORF1ab/nsp2 | 85 | T85S | Acc | Tcc | 26 | 29 | All | 0.000005 |
ORF1ab/nsp2 | 85 | T85S | aCc | aGc | 2 | 29 | All | 0 |
ORF1ab/nsp2 | 85 | T85S | aCC | aGT | 1 | 29 | All | 0 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 29 | 29 | B.1.177.43 | 0.042836 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 29 | 29 | B.1.177.7 | 0.004781 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 29 | 29 | B.1.308 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 29 | 29 | B.1.321 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 29 | 29 | B.1.428.1 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 29 | 29 | B.1.494 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 29 | 29 | B.1.510 | 0.763158 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 28 | 28 | AY.5.3 | 0.009447 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 28 | 28 | B.1.160.16 | 0.026022 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 27 | 27 | B.1.160 | 0.000842 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 24 | 26 | AY.3 | 0.000239 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 2 | 26 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 26 | 26 | B.1.177.15 | 0.016404 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 26 | 26 | B.1.239 | 0.031746 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 26 | 26 | B.1.318 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 26 | 26 | B.1.351.1 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 26 | 26 | B.1.588.1 | 1 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 25 | 25 | AY.100 | 0.00115 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 25 | 25 | AY.20 | 0.000972 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 25 | 25 | B.1.1.507 | 0.217391 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 25 | 25 | B.1.431 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 25 | 25 | B.1.511 | 0.862069 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 25 | 25 | B.1.592 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 25 | 25 | B.1.595.2 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 25 | 25 | B.1.611 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 25 | 25 | B.1.615 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 25 | 25 | P.1.1 | 0.007942 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 24 | 24 | AY.23 | 0.001674 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 24 | 24 | AY.9.2 | 0.000882 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 24 | 24 | B.1.36 | 0.003502 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 22 | 23 | A | 0.008514 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 23 | A | 0.000387 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 23 | 23 | AY.20 | 0.000894 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 22 | 23 | AY.4.2 | 0.000477 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 23 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 23 | 23 | AY.46.6 | 0.001661 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 23 | 23 | AY.53 | 0.006613 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 23 | 23 | B.1.1.222 | 0.004692 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 23 | 23 | B.1.1.526 | 0.08156 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 21 | 23 | B.1.354 | 0.913043 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 2 | 23 | B.1.354 | 0.086957 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 23 | 23 | B.1.489 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 23 | 23 | P.1.12 | 0.011133 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 23 | 23 | P.2 | 0.004293 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 21 | 21 | AY.23 | 0.001465 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 21 | 21 | B.1.1.302 | 0.043568 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 21 | 21 | B.1.263 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 21 | 21 | B.1.264.1 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 21 | 21 | B.1.309 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 21 | 21 | B.1.609 | 0.010067 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 21 | 21 | C.37 | 0.002437 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 20 | 20 | B.1.310 | 0.952381 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 20 | 20 | B.1.358 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 20 | 20 | B.1.618 | 0.080645 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 20 | 20 | B.1.636 | 0.134228 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 18 | 19 | AY.39 | 0.000445 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 19 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 19 | 19 | B.1.502 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 19 | 19 | B.1.607 | 1 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 18 | 18 | B.1.1.133 | 0.152542 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 18 | 18 | B.1.1.416 | 0.01629 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 18 | 18 | B.1.157 | 0.053731 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 18 | 18 | B.1.491 | 0.947368 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 18 | 18 | B.1.621 | 0.001593 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 17 | 17 | AY.29 | 0.000268 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 17 | 17 | B.1.1.38 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 17 | 17 | B.1.1.50 | 0.011541 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 17 | 17 | B.1.177.33 | 0.027961 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 17 | 17 | B.1.292 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 17 | 17 | B.1.434 | 0.894737 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 14 | 16 | AY.26 | 0.000396 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 16 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 1 | 16 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 16 | 16 | AY.9.1 | 0.00134 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 16 | 16 | B.1.177.58 | 0.021305 |
ORF1ab/nsp2 | 85 | T85V | ACc | GTc | 16 | 16 | B.1.351 | 0.000476 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 16 | 16 | B.1.638 | 0.842105 |
ORF1ab/nsp2 | 85 | T85L | ACc | CTc | 12 | 15 | All | 0.000002 |
ORF1ab/nsp2 | 85 | T85L | ACC | CTT | 2 | 15 | All | 0 |
ORF1ab/nsp2 | 85 | T85L | ACC | CTG | 1 | 15 | All | 0 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 15 | 15 | AY.26 | 0.000425 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 15 | 15 | B.1.1.432 | 0.018987 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 15 | 15 | B.1.177.10 | 0.013169 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 15 | 15 | B.1.177.16 | 0.009967 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 15 | 15 | B.1.362.1 | 1 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 15 | 15 | B.1.621 | 0.001328 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 15 | 15 | B.6.6 | 0.013333 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 13 | 14 | B.1.1.214 | 0.000721 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 14 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 14 | 14 | B.1.500 | 0.736842 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 14 | 14 | B.1.525 | 0.001584 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 14 | 14 | B.1.561 | 0.005558 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 9 | 13 | AY.3.1 | 0.000767 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 4 | 13 | AY.3.1 | 0.000341 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 13 | 13 | AY.68 | 0.003559 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 12 | 13 | AY.75 | 0.000672 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 13 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 13 | 13 | B.1.396 | 0.009174 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 13 | 13 | C.36.3 | 0.007374 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 12 | 12 | AY.75 | 0.000672 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 11 | 12 | AY.98.1 | 0.000533 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 12 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 12 | 12 | B.1.400 | 0.005148 |
ORF1ab/nsp2 | 85 | T85L | ACc | CTc | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 12 | 12 | B.1.625 | 0.028235 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 12 | 12 | C.35 | 0.009288 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 11 | 11 | AY.117 | 0.00093 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp2 | 85 | T85S | Acc | Tcc | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 11 | 11 | AY.70 | 0.002294 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 11 | 11 | AY.96 | 0.022822 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 11 | 11 | B.1.1.70 | 0.003752 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 11 | 11 | B.1.177.7 | 0.001813 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 11 | 11 | B.1.400 | 0.004719 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 11 | 11 | B.1.78 | 0.094017 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 10 | 10 | A.2.5 | 0.00499 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 10 | 10 | A.23.1 | 0.007042 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 9 | 10 | AY.61 | 0.000943 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 10 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 10 | 10 | AY.62 | 0.004357 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 10 | 10 | AY.67 | 0.004643 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 10 | 10 | B.1.1.222 | 0.00204 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 10 | 10 | B.1.1.312 | 0.01912 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 10 | 10 | B.1.210 | 0.021322 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 10 | 10 | B.1.490 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 9 | 9 | AY.27 | 0.000582 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 9 | 9 | AY.5.4 | 0.00249 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 9 | 9 | AY.54 | 0.000858 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 9 | 9 | AY.74 | 0.001041 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 9 | 9 | B.1.1.389 | 0.054545 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 9 | 9 | B.1.177.69 | 0.013353 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 9 | 9 | B.1.241 | 0.007305 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 9 | 9 | B.1.279 | 0.004622 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 9 | 9 | B.1.470 | 0.01264 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 9 | 9 | B.1.486 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 9 | 9 | B.1.499.1 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 9 | 9 | B.1.94 | 0.243243 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | AY.113 | 0.001139 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | AY.35 | 0.001864 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | AY.38 | 0.003994 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | B.1.1.192 | 0.018476 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | B.1.139 | 0.005865 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | B.1.342 | 0.8 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | B.1.546 | 0.02963 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | B.1.565 | 0.006483 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | B.1.614 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | B.4 | 0.01766 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | P.1.15 | 0.001859 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 7 | AY.120 | 0.000149 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 2 | 7 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 7 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | AY.30 | 0.00277 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | AY.37 | 0.002212 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | AY.67 | 0.00325 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 7 | B | 0.000639 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 2 | 7 | B | 0.000256 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 7 | B.1.1.434 | 0.002091 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 1 | 7 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 7 | 7 | B.1.177.74 | 0.106061 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | B.1.214.2 | 0.004197 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | B.1.316 | 0.777778 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | B.1.350.1 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | B.1.36.10 | 0.033493 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | B.1.378 | 0.047945 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 7 | 7 | B.1.438.1 | 0.000751 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | B.1.496 | 0.875 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 7 | 7 | B.1.544 | 0.042169 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 7 | 7 | B.1.9.5 | 0.039773 |
ORF1ab/nsp2 | 85 | T85S | Acc | Tcc | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | AY.58 | 0.005445 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | AZ.3 | 0.009119 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | B.1.1.269 | 0.008119 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | B.1.1.297 | 0.013423 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | B.1.1.326 | 0.010563 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | B.1.1.83 | 0.01626 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | B.1.128 | 0.003812 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | B.1.177.86 | 0.001101 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | B.1.280 | 0.042857 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 5 | 6 | B.1.36.29 | 0.002587 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 6 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | B.1.473 | 0.115385 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 6 | 6 | B.1.619.1 | 0.003849 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | B.1.621.1 | 0.003035 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 6 | 6 | B.4.1 | 0.113208 |
ORF1ab/nsp2 | 85 | T85S | Acc | Tcc | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | AY.41 | 0.00147 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 3 | 5 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 85 | T85A | AcC | GcT | 2 | 5 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | AY.65 | 0.002665 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | AY.7.2 | 0.002796 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.1.161 | 0.017668 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.1.226 | 0.02907 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 5 | 5 | B.1.1.254 | 0.05618 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.126 | 0.006378 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.177.75 | 0.005203 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.177.82 | 0.002387 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.214 | 0.018315 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.232 | 0.002687 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.36.17 | 0.00247 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | B.1.36.22 | 0.006039 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.436 | 0.005144 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.488 | 1 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.530 | 0.035714 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.544 | 0.03012 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.81 | 0.106383 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.1.88.1 | 0.024038 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | B.3 | 0.004153 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | C.30 | 0.008636 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 4 | 5 | Q.1 | 0.000505 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 5 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | AY.1 | 0.001583 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | AY.109 | 0.002959 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 4 | AY.116 | 0.00086 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 4 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | AY.46.2 | 0.002541 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | AY.51 | 0.003636 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.1.210 | 0.022857 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.1.258 | 0.013029 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.1.294 | 0.005063 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.1.409 | 0.011331 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.103 | 0.076923 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.104 | 0.01476 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 4 | B.1.111 | 0.00235 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 2 | 4 | B.1.111 | 0.00235 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.181 | 0.078431 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.190 | 0.04 |
ORF1ab/nsp2 | 85 | T85V | ACc | GTc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.243.1 | 0.088889 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.281 | 0.086957 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.36.22 | 0.004831 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.398 | 0.011905 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.399 | 0.007737 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.527 | 0.014815 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | B.1.633 | 0.166667 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | C.16 | 0.004242 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 4 | P.1.12 | 0.001452 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 1 | 4 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | P.5 | 0.054795 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | A.2 | 0.001985 |
ORF1ab/nsp2 | 85 | T85M | aCC | aTG | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 3 | AY.34.1 | 0.00102 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 3 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.46.1 | 0.00308 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | AY.56 | 0.004815 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 3 | AY.68 | 0.000547 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 3 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.89 | 0.014706 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.1.230 | 0.027523 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | B.1.1.263 | 0.004673 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.1.289 | 0.00625 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.1.370 | 0.037975 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.1.528 | 0.014423 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.140 | 0.056604 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.170 | 0.012931 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.177.6 | 0.00293 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.177.63 | 0.008108 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.177.8 | 0.002257 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.189 | 0.012876 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | B.1.22 | 0.003953 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.235 | 0.007557 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 2 | 3 | B.1.36.16 | 0.002849 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 3 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.382 | 0.026786 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.390 | 0.031915 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.391 | 0.003382 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.395 | 0.021127 |
ORF1ab/nsp2 | 85 | T85V | ACc | GTc | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 2 | 3 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 3 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 85 | T85A | AcC | GcT | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 3 | 3 | C.37.1 | 0.007853 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 85 | T85L | ACC | CTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | A.3 | 0.004193 |
ORF1ab/nsp2 | 85 | T85P | Acc | Ccc | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 85 | T85R | aCC | aGG | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 85 | T85del1 | aCc | a-c | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 85 | T85del1 | acC | ac- | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 85 | T85I | aCC | aTT | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 2 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 2 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 2 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 2 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.171 | 0.007353 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.229 | 0.011494 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.261 | 0.017241 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.267 | 0.020202 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.286 | 0.005797 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.322 | 0.017544 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.344 | 0.021505 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.377 | 0.002762 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.524 | 0.041667 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.1.98 | 0.037037 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.113 | 0.03125 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.160.26 | 0.004843 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp2 | 85 | T85T | acC | acG | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.177.80 | 0.003824 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.179 | 0.007519 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.212 | 0.033333 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.223 | 0.005556 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.23 | 0.012121 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.36.33 | 0.015152 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.397 | 0.009709 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.441 | 0.019231 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.443 | 0.009346 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.467 | 0.08 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.533 | 0.019231 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.550 | 0.027397 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.555 | 0.044444 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.558 | 0.009132 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.634 | 0.006849 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.1.70 | 0.04878 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | B.45 | 0.007663 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | N.9 | 0.011905 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 85 | T85F | ACc | TTc | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 85 | T85S | Acc | Tcc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 85 | T85S | Acc | Tcc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 85 | T85S | Acc | Tcc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 85 | T85P | Acc | Ccc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 85 | T85R | aCC | aGG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 85 | T85S | aCC | aGT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 85 | T85M | aCC | aTG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 85 | T85A | AcC | GcT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 85 | T85V | ACC | GTT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 85 | T85F | ACc | TTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 85 | T85del1 | acC | ac- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.122 | 0.045455 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.123 | 0.017857 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.251 | 0.007937 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.268 | 0.014925 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp2 | 85 | T85L | ACC | CTG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.367 | 0.055556 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.421 | 0.030303 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.437 | 0.010417 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.45 | 0.014085 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.450 | 0.034483 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.480 | 0.025 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 85 | T85R | aCC | aGG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp2 | 85 | T85T | acC | acA | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.160.18 | 0.007299 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.28 | 0.007407 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.178 | 0.02381 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.187 | 0.033333 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.194 | 0.04 |
ORF1ab/nsp2 | 85 | T85S | aCc | aGc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 85 | T85M | aCC | aTG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.215 | 0.009615 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.215 | 0.009615 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.224 | 0.025 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.276 | 0.016949 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp2 | 85 | T85del1 | aCc | a-c | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.463 | 0.008065 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.476 | 0.1 |
ORF1ab/nsp2 | 85 | T85S | aCc | aGc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 85 | T85V | ACc | GTc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.535 | 0.028571 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp2 | 85 | T85M | aCC | aTG | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 85 | T85V | ACc | GTc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 85 | T85A | Acc | Gcc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 85 | T85N | aCc | aAc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 85 | T85S | Acc | Tcc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.76 | 0.011364 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp2 | 85 | T85P | Acc | Ccc | 1 | 1 | B.53 | 0.011765 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | C.38 | 0.008065 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 85 | T85T | acC | acT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 85 | T85I | aCc | aTc | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp2 | 85 | T85del | ACC | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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