CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 8 | N8N | N188N | syn | aaC | aaT | 31535 | 31535 | 1 | 827-829 |
ORF1ab/nsp2 | 8 | N8S | N188S | nonsyn | aAc | aGc | 72 | 70 | 0.972222 | 827-829 |
ORF1ab/nsp2 | 8 | N8S | N188S | nonsyn | aAC | aGT | 72 | 2 | 0.0277778 | 827-829 |
ORF1ab/nsp2 | 8 | N8D | N188D | nonsyn | Aac | Gac | 71 | 71 | 1 | 827-829 |
ORF1ab/nsp2 | 8 | N8K | N188K | nonsyn | aaC | aaA | 71 | 69 | 0.971831 | 827-829 |
ORF1ab/nsp2 | 8 | N8K | N188K | nonsyn | aaC | aaG | 71 | 2 | 0.028169 | 827-829 |
ORF1ab/nsp2 | 8 | N8del | N188del | del | AAC | --- | 37 | 37 | 1 | 827-829 |
ORF1ab/nsp2 | 8 | N8T | N188T | nonsyn | aAc | aCc | 23 | 23 | 1 | 827-829 |
ORF1ab/nsp2 | 8 | N8I | N188I | nonsyn | aAc | aTc | 7 | 6 | 0.857143 | 827-829 |
ORF1ab/nsp2 | 8 | N8I | N188I | nonsyn | aAC | aTT | 7 | 1 | 0.142857 | 827-829 |
ORF1ab/nsp2 | 8 | N8Y | N188Y | nonsyn | Aac | Tac | 4 | 3 | 0.75 | 827-829 |
ORF1ab/nsp2 | 8 | N8Y | N188Y | nonsyn | AaC | TaT | 4 | 1 | 0.25 | 827-829 |
ORF1ab/nsp2 | 8 | N8del1 | N188del1 | del | Aac | -ac | 2 | 2 | 1 | 827-829 |
ORF1ab/nsp2 | 8 | N8G | N188G | nonsyn | AAc | GGc | 2 | 2 | 1 | 827-829 |
ORF1ab/nsp2 | 8 | N8H | N188H | nonsyn | Aac | Cac | 2 | 2 | 1 | 827-829 |
ORF1ab/nsp2 | 8 | N8C | N188C | nonsyn | AAc | TGc | 2 | 1 | 0.5 | 827-829 |
ORF1ab/nsp2 | 8 | N8C | N188C | nonsyn | AAC | TGT | 2 | 1 | 0.5 | 827-829 |
ORF1ab/nsp2 | 8 | N8V | N188V | nonsyn | AAc | GTc | 1 | 1 | 1 | 827-829 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 31535 | 31535 | All | 0.006031 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 9839 | 9839 | AY.43 | 0.043591 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 9190 | 9190 | B.1.258.17 | 0.9555 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2028 | 2028 | B.1.1.7 | 0.001816 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1145 | 1145 | P.1 | 0.018038 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 965 | 965 | AY.4 | 0.001502 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 956 | 956 | B.1.617.2 | 0.0036 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 435 | 435 | B.1 | 0.003984 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 425 | 425 | AY.103 | 0.002639 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 390 | 390 | AY.69 | 0.072802 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 370 | 370 | AY.44 | 0.002252 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 293 | 293 | B.1.631 | 0.986532 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 285 | 285 | AY.3 | 0.002835 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 271 | 271 | AY.39 | 0.006697 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 213 | 213 | B.1.2 | 0.001876 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 191 | 191 | AY.25 | 0.001149 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 188 | 188 | AY.5 | 0.003882 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 171 | 171 | B.1.177 | 0.002252 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 166 | 166 | AY.4.2 | 0.0036 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 165 | 165 | B.1.1.138 | 1 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 140 | 140 | B.1.1 | 0.00254 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 138 | 138 | AY.20 | 0.005363 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 130 | 130 | B.1.120 | 1 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 127 | 127 | B.1.526 | 0.002985 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 119 | 119 | B.1.258 | 0.007919 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 116 | 116 | AY.102 | 0.003076 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 107 | 107 | AY.29 | 0.001688 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 99 | 99 | R.1 | 0.008911 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 93 | 93 | B.1.1.349 | 0.958763 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 88 | 88 | B.1.351 | 0.002616 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 86 | 86 | B.1.1.519 | 0.003415 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 77 | 77 | AY.119 | 0.002719 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 70 | 72 | All | 0.000013 |
ORF1ab/nsp2 | 8 | N8S | aAC | aGT | 2 | 72 | All | 0 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 71 | 71 | All | 0.000014 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 69 | 71 | All | 0.000013 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaG | 2 | 71 | All | 0 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 68 | 68 | B.1.438.1 | 0.007294 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 60 | 60 | AY.33 | 0.004007 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 57 | 57 | D.5 | 0.283582 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 56 | 56 | AY.42 | 0.002253 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 53 | 53 | B.1.609 | 0.025407 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 52 | 52 | AY.34 | 0.005042 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 50 | 50 | B.1.234 | 0.006597 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 48 | 48 | AY.26 | 0.001359 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 47 | 47 | B.1.160 | 0.001466 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 47 | 47 | Q.8 | 0.007751 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 44 | 44 | B.1.429 | 0.001035 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 43 | 43 | B.1.1.222 | 0.008772 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 41 | 41 | B.1.177.21 | 0.003135 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 38 | 38 | AE.8 | 0.018582 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 37 | 37 | All | 0.000007 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 37 | 37 | AY.23 | 0.002581 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 37 | 37 | AY.46.6 | 0.002672 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 35 | 35 | B.1.221 | 0.002486 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 35 | 35 | P.1.14 | 0.001673 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 33 | 33 | AY.75.1 | 0.00595 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 33 | 33 | B.1.1.39 | 0.01682 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 31 | 31 | AY.100 | 0.001426 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 30 | 30 | AY.117 | 0.002535 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 29 | 29 | AY.106 | 0.009712 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 29 | 29 | P.1.15 | 0.006738 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 28 | 28 | B.1.637 | 0.002046 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 26 | 26 | AY.120 | 0.000967 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 26 | 26 | B.1.427 | 0.001313 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 26 | 26 | P.1.17 | 0.004206 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 25 | 25 | AY.3.1 | 0.002131 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 25 | 25 | AY.46 | 0.002602 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 25 | 25 | B.1.575 | 0.007585 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 24 | 24 | AY.75 | 0.001345 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 24 | 24 | AY.98 | 0.001896 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 24 | 24 | C.37 | 0.002786 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 24 | 24 | P.1.1 | 0.007624 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 23 | 23 | All | 0.000004 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 23 | 23 | AY.111 | 0.004212 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 23 | 23 | AY.116 | 0.006596 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 23 | 23 | AY.121 | 0.003112 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 23 | 23 | AY.98.1 | 0.001114 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 22 | 22 | AY.4.1 | 0.016224 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 20 | 20 | AY.14 | 0.00176 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 20 | 20 | B.1.232 | 0.010747 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 20 | 20 | B.1.243 | 0.001392 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 19 | 19 | AY.39.1 | 0.000753 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 19 | 19 | B | 0.002428 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 19 | 19 | B.1.177.18 | 0.022042 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 19 | 19 | B.1.258.24 | 0.204301 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 19 | 19 | B.1.497 | 0.00598 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 19 | 19 | P.1.12 | 0.009197 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 18 | 18 | B.1.240 | 0.00388 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 17 | 17 | AY.4.2 | 0.000369 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 17 | 17 | B.1.36 | 0.00248 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 16 | 16 | AY.120 | 0.000595 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 16 | 16 | B.1.258.14 | 0.015686 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 16 | 16 | B.1.573 | 0.097561 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 15 | 15 | AY.61 | 0.001572 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 15 | 15 | B.1.621 | 0.001328 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 14 | 14 | B.1.545 | 0.202899 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 14 | 14 | B.1.596 | 0.00122 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 13 | 13 | AY.113 | 0.001851 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 13 | 13 | AY.19 | 0.014823 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 13 | 13 | B.1.617.1 | 0.001677 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 12 | 12 | AY.105 | 0.007717 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 12 | 12 | AY.5.4 | 0.00332 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 11 | 11 | AY.73 | 0.007319 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 11 | 11 | AY.74 | 0.001272 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 11 | 11 | B.1.1.294 | 0.013924 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 11 | 11 | B.1.367 | 0.008716 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 11 | 11 | B.1.525 | 0.001245 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 10 | 10 | AY.2 | 0.003561 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 10 | 10 | B.1.258.4 | 0.034483 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 9 | 9 | A | 0.003483 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 9 | 9 | AY.5.3 | 0.003036 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 9 | 9 | B.1.1.317 | 0.003705 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 9 | 9 | B.1.466.2 | 0.003521 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 9 | 9 | B.1.505 | 0.039474 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 9 | 9 | B.1.595 | 0.002349 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 8 | 8 | AY.65 | 0.004264 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 8 | 8 | AY.9 | 0.000541 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 8 | 8 | AY.99.2 | 0.000737 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 8 | 8 | B.1.1.486 | 0.012618 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 8 | 8 | B.1.206 | 0.006525 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 8 | 8 | P.1.8 | 0.038278 |
ORF1ab/nsp2 | 8 | N8I | aAc | aTc | 6 | 7 | All | 0.000001 |
ORF1ab/nsp2 | 8 | N8I | aAC | aTT | 1 | 7 | All | 0 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 7 | 7 | B.1.1.284 | 0.000752 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 7 | 7 | B.1.177.12 | 0.001062 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 7 | 7 | B.1.595.2 | 0.28 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 7 | 7 | B.4.1 | 0.132075 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 6 | 6 | AY.16.1 | 0.00282 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 6 | 6 | AY.53 | 0.001725 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 6 | 6 | AY.85 | 0.002563 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 6 | 6 | AY.86 | 0.004979 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 6 | 6 | B.1.1.372 | 0.004132 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 6 | 6 | B.1.1.70 | 0.002046 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | AY.37 | 0.00158 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | AY.52 | 0.004072 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | AY.55 | 0.004587 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | AY.58 | 0.004537 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | B.1.177.55 | 0.011655 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | B.1.239 | 0.006105 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | B.1.564 | 0.002129 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp2 | 8 | N8Y | Aac | Tac | 3 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 8 | N8Y | AaC | TaT | 1 | 4 | All | 0 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 4 | 4 | B.1.1.198 | 0.005874 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 4 | 4 | B.1.177.10 | 0.003512 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 4 | 4 | B.1.565 | 0.003241 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 4 | 4 | B.1.623 | 0.002146 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 4 | 4 | B.1.627 | 0.008081 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 4 | 4 | P.1.16 | 0.001496 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | AY.46.1 | 0.00308 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.1.101 | 0.03 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.1.161 | 0.010601 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.1.389 | 0.018182 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.177.33 | 0.004934 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.177.6 | 0.00293 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.260 | 0.010033 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.36.36 | 0.001806 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 3 | 3 | B.1.612 | 0.007958 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 8 | N8Y | Aac | Tac | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 8 | N8S | aAC | aGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 8 | N8C | AAC | TGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 8 | N8C | AAc | TGc | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 8 | N8Y | AaC | TaT | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | A.2.5.1 | 0.009615 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp2 | 8 | N8H | Aac | Cac | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 8 | N8G | AAc | GGc | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 8 | N8del1 | Aac | -ac | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 8 | N8C | AAc | TGc | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 8 | N8C | AAC | TGT | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AY.97 | 0.003401 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | AZ.6 | 0.016807 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.1.289 | 0.004167 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.1.373 | 0.047619 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.1.406 | 0.012987 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.1.411 | 0.029412 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.1.507 | 0.017391 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.115 | 0.043478 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.22 | 0.002635 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.471 | 0.005464 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.632 | 0.013423 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.1.91 | 0.004149 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | C.2 | 0.032258 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | C.26 | 0.014706 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 2 | 2 | W.2 | 0.009662 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | A.4 | 0.012821 |
ORF1ab/nsp2 | 8 | N8I | aAc | aTc | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AE.4 | 0.043478 |
ORF1ab/nsp2 | 8 | N8V | AAc | GTc | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 8 | N8I | aAc | aTc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 8 | N8I | aAc | aTc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 8 | N8I | aAc | aTc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 8 | N8H | Aac | Cac | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 8 | N8H | Aac | Cac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 8 | N8I | aAC | aTT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 8 | N8Y | Aac | Tac | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 8 | N8I | aAc | aTc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 8 | N8I | aAc | aTc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp2 | 8 | N8V | AAc | GTc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | B.1.1.418 | 0.022727 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.515 | 0.02 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.159 | 0.012195 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 1 | 1 | B.1.160.24 | 0.004425 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | B.1.194 | 0.04 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 8 | N8Y | Aac | Tac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 8 | N8del1 | Aac | -ac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 8 | N8del1 | Aac | -ac | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.359 | 0.022727 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.370 | 0.008 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 1 | 1 | B.1.467 | 0.04 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 8 | N8G | AAc | GGc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 8 | N8D | Aac | Gac | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.586 | 0.010989 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp2 | 8 | N8S | aAC | aGT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 8 | N8T | aAc | aCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | C.32 | 0.023256 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 8 | N8del | AAC | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 8 | N8G | AAc | GGc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp2 | 8 | N8S | aAc | aGc | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 8 | N8K | aaC | aaG | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 8 | N8N | aaC | aaT | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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