CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 7

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp27D7DD187DsyngaTgaC16061160611824-826
ORF1ab/nsp27D7delD187deldelGAT---39391824-826
ORF1ab/nsp27D7ED187EnonsyngaTgaG27260.962963824-826
ORF1ab/nsp27D7ED187EnonsyngaTgaA2710.037037824-826
ORF1ab/nsp27D7YD187YnonsynGatTat23231824-826
ORF1ab/nsp27D7GD187GnonsyngAtgGt11111824-826
ORF1ab/nsp27D7ND187NnonsynGatAat650.833333824-826
ORF1ab/nsp27D7ND187NnonsynGaTAaC610.166667824-826
ORF1ab/nsp27D7HD187HnonsynGatCat551824-826
ORF1ab/nsp27D7VD187VnonsyngAtgTt530.6824-826
ORF1ab/nsp27D7VD187VnonsyngATgTC510.2824-826
ORF1ab/nsp27D7VD187VnonsyngATgTG510.2824-826
ORF1ab/nsp27D7del1D187del1delGat-at430.75824-826
ORF1ab/nsp27D7del1D187del1delGaT-aA410.25824-826
ORF1ab/nsp27D7ID187InonsynGAtATt210.5824-826
ORF1ab/nsp27D7ID187InonsynGATATC210.5824-826
ORF1ab/nsp27D7MD187MnonsynGATATG111824-826
ORF1ab/nsp27D7CD187CnonsynGAtTGt111824-826
ORF1ab/nsp27D7del2D187del2delGAt--t111824-826
ORF1ab/nsp27D7AD187AnonsyngAtgCt111824-826

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp27D7DgaTgaC1606116061All0.003072
ORF1ab/nsp27D7DgaTgaC1516115161AY.1180.949818
ORF1ab/nsp27D7DgaTgaC450450B.1.617.20.001694
ORF1ab/nsp27D7DgaTgaC103103B.1.1.70.000092
ORF1ab/nsp27D7DgaTgaC5454AY.390.001334
ORF1ab/nsp27D7delGAT---3939All0.000007
ORF1ab/nsp27D7DgaTgaC3232AY.40.00005
ORF1ab/nsp27D7DgaTgaC2828AY.430.000124
ORF1ab/nsp27D7EgaTgaG2627All0.000005
ORF1ab/nsp27D7EgaTgaA127All0
ORF1ab/nsp27D7YGatTat2323All0.000004
ORF1ab/nsp27D7DgaTgaC1919B.10.000174
ORF1ab/nsp27D7DgaTgaC1717AY.1030.000106
ORF1ab/nsp27D7DgaTgaC1616AY.440.000097
ORF1ab/nsp27D7DgaTgaC1515AK.20.681818
ORF1ab/nsp27D7DgaTgaC1212AY.1170.001014
ORF1ab/nsp27D7GgAtgGt1111All0.000002
ORF1ab/nsp27D7DgaTgaC1111AY.920.00316
ORF1ab/nsp27D7DgaTgaC99AY.330.000601
ORF1ab/nsp27D7DgaTgaC88AY.250.000048
ORF1ab/nsp27D7DgaTgaC88AY.4.20.000174
ORF1ab/nsp27D7DgaTgaC77B0.000895
ORF1ab/nsp27D7EgaTgaG77B.1.1.3010.008255
ORF1ab/nsp27D7NGatAat56All0.000001
ORF1ab/nsp27D7NGaTAaC16All0
ORF1ab/nsp27D7DgaTgaC66AY.1020.000159
ORF1ab/nsp27D7DgaTgaC66AY.9.20.00022
ORF1ab/nsp27D7DgaTgaC66B.1.3510.000178
ORF1ab/nsp27D7DgaTgaC66B.1.5610.002382
ORF1ab/nsp27D7EgaTgaG66B.1.617.20.000023
ORF1ab/nsp27D7HGatCat55All0.000001
ORF1ab/nsp27D7VgAtgTt35All0.000001
ORF1ab/nsp27D7VgATgTG15All0
ORF1ab/nsp27D7VgATgTC15All0
ORF1ab/nsp27D7delGAT---55B.1.1.330.002104
ORF1ab/nsp27D7del1Gat-at34All0.000001
ORF1ab/nsp27D7del1GaT-aA14All0
ORF1ab/nsp27D7DgaTgaC44AY.260.000113
ORF1ab/nsp27D7DgaTgaC44AY.460.000416
ORF1ab/nsp27D7YGatTat44B.10.000037
ORF1ab/nsp27D7delGAT---44B.1.1.3480.003185
ORF1ab/nsp27D7delGAT---44B.1.1.70.000004
ORF1ab/nsp27D7DgaTgaC44B.1.1770.000053
ORF1ab/nsp27D7DgaTgaC44B.1.2580.000266
ORF1ab/nsp27D7DgaTgaC44B.1.4290.000094
ORF1ab/nsp27D7DgaTgaC33AY.1040.005952
ORF1ab/nsp27D7delGAT---33AY.250.000018
ORF1ab/nsp27D7DgaTgaC33AY.39.10.000119
ORF1ab/nsp27D7GgAtgGt33AY.40.000005
ORF1ab/nsp27D7DgaTgaC33AY.420.000121
ORF1ab/nsp27D7DgaTgaC33AY.450.000365
ORF1ab/nsp27D7YGatTat33B.1.1.70.000003
ORF1ab/nsp27D7HGatCat33B.1.1.70.000003
ORF1ab/nsp27D7DgaTgaC33B.1.177.600.000655
ORF1ab/nsp27D7DgaTgaC33B.1.6100.010638
ORF1ab/nsp27D7NGaTAaC120.055556
ORF1ab/nsp27D7IGATATC120.055556
ORF1ab/nsp27D7IGAtATt120.055556
ORF1ab/nsp27D7VgATgTC120.055556
ORF1ab/nsp27D7NGatAat120.055556
ORF1ab/nsp27D7VgAtgTt120.055556
ORF1ab/nsp27D7IGATATC12All0
ORF1ab/nsp27D7IGAtATt12All0
ORF1ab/nsp27D7DgaTgaC22AY.1130.000285
ORF1ab/nsp27D7DgaTgaC22AY.230.000139
ORF1ab/nsp27D7GgAtgGt22AY.300.000791
ORF1ab/nsp27D7DgaTgaC22AY.320.001065
ORF1ab/nsp27D7DgaTgaC22AY.4.30.001684
ORF1ab/nsp27D7DgaTgaC22AY.4.50.000215
ORF1ab/nsp27D7DgaTgaC22AY.46.30.001867
ORF1ab/nsp27D7EgaTgaG22B.10.000018
ORF1ab/nsp27D7delGAT---22B.10.000018
ORF1ab/nsp27D7EgaTgaG22B.1.10.000036
ORF1ab/nsp27D7GgAtgGt22B.1.1.70.000002
ORF1ab/nsp27D7EgaTgaG12B.1.1.70.000001
ORF1ab/nsp27D7EgaTgaA12B.1.1.70.000001
ORF1ab/nsp27D7del1GaT-aA12B.1.1.70.000001
ORF1ab/nsp27D7del1Gat-at12B.1.1.70.000001
ORF1ab/nsp27D7DgaTgaC22B.1.1920.018519
ORF1ab/nsp27D7DgaTgaC22B.1.2210.000142
ORF1ab/nsp27D7DgaTgaC22B.1.2340.000264
ORF1ab/nsp27D7DgaTgaC22B.1.5260.000047
ORF1ab/nsp27D7delGAT---22B.1.617.20.000008
ORF1ab/nsp27D7EgaTgaG22B.610.011494
ORF1ab/nsp27D7DgaTgaC22C.370.000232
ORF1ab/nsp27D7YGatTat22D.20.00015
ORF1ab/nsp27D7delGAT---22N.40.008511
ORF1ab/nsp27D7delGAT---22N.60.014184
ORF1ab/nsp27D7delGAT---22P.20.000373
ORF1ab/nsp27D7DgaTgaC110.055556
ORF1ab/nsp27D7delGAT---11A.2.20.001689
ORF1ab/nsp27D7del2GAt--t11All0
ORF1ab/nsp27D7CGAtTGt11All0
ORF1ab/nsp27D7MGATATG11All0
ORF1ab/nsp27D7AgAtgCt11All0
ORF1ab/nsp27D7DgaTgaC11AU.20.002421
ORF1ab/nsp27D7YGatTat11AY.1020.000027
ORF1ab/nsp27D7EgaTgaG11AY.1030.000006
ORF1ab/nsp27D7YGatTat11AY.1030.000006
ORF1ab/nsp27D7delGAT---11AY.1110.000183
ORF1ab/nsp27D7VgATgTG11AY.1190.000035
ORF1ab/nsp27D7YGatTat11AY.120.20.001285
ORF1ab/nsp27D7YGatTat11AY.200.000039
ORF1ab/nsp27D7YGatTat11AY.230.00007
ORF1ab/nsp27D7del1Gat-at11AY.250.000006
ORF1ab/nsp27D7YGatTat11AY.250.000006
ORF1ab/nsp27D7HGatCat11AY.40.000002
ORF1ab/nsp27D7DgaTgaC11AY.4.2.10.000149
ORF1ab/nsp27D7delGAT---11AY.4.50.000107
ORF1ab/nsp27D7NGatAat11AY.430.000004
ORF1ab/nsp27D7del1Gat-at11AY.430.000004
ORF1ab/nsp27D7NGatAat11AY.440.000006
ORF1ab/nsp27D7GgAtgGt11AY.440.000006
ORF1ab/nsp27D7YGatTat11AY.460.000104
ORF1ab/nsp27D7DgaTgaC11AY.470.000031
ORF1ab/nsp27D7DgaTgaC11AY.50.000021
ORF1ab/nsp27D7DgaTgaC11AY.540.000095
ORF1ab/nsp27D7NGatAat11AY.670.000464
ORF1ab/nsp27D7DgaTgaC11AY.690.000187
ORF1ab/nsp27D7DgaTgaC11AY.750.000056
ORF1ab/nsp27D7YGatTat11AY.90.000068
ORF1ab/nsp27D7EgaTgaG11AY.980.000079
ORF1ab/nsp27D7DgaTgaC11AY.98.10.000048
ORF1ab/nsp27D7DgaTgaC11B.1.1.1860.003436
ORF1ab/nsp27D7DgaTgaC11B.1.1.2910.000742
ORF1ab/nsp27D7DgaTgaC11B.1.1.3060.000438
ORF1ab/nsp27D7EgaTgaG11B.1.1.3180.000302
ORF1ab/nsp27D7delGAT---11B.1.1.4200.001006
ORF1ab/nsp27D7DgaTgaC11B.1.1.630.000386
ORF1ab/nsp27D7del2GAt--t11B.1.1.70.000001
ORF1ab/nsp27D7VgAtgTt11B.1.1.70.000001
ORF1ab/nsp27D7YGatTat11B.1.1.700.000341
ORF1ab/nsp27D7AgAtgCt11B.1.1600.000031
ORF1ab/nsp27D7DgaTgaC11B.1.177.210.000076
ORF1ab/nsp27D7DgaTgaC11B.1.177.70.000165
ORF1ab/nsp27D7delGAT---11B.1.177.830.001481
ORF1ab/nsp27D7VgAtgTt11B.1.20.000009
ORF1ab/nsp27D7HGatCat11B.1.20.000009
ORF1ab/nsp27D7DgaTgaC11B.1.221.30.000833
ORF1ab/nsp27D7DgaTgaC11B.1.3110.000275
ORF1ab/nsp27D7GgAtgGt11B.1.3130.006579
ORF1ab/nsp27D7EgaTgaG11B.1.3320.003497
ORF1ab/nsp27D7DgaTgaC11B.1.3350.010309
ORF1ab/nsp27D7delGAT---11B.1.351.30.000876
ORF1ab/nsp27D7delGAT---11B.1.360.000146
ORF1ab/nsp27D7YGatTat11B.1.3670.000792
ORF1ab/nsp27D7DgaTgaC11B.1.4090.000781
ORF1ab/nsp27D7YGatTat11B.1.4270.00005
ORF1ab/nsp27D7delGAT---11B.1.4270.00005
ORF1ab/nsp27D7DgaTgaC11B.1.4270.00005
ORF1ab/nsp27D7delGAT---11B.1.4290.000024
ORF1ab/nsp27D7EgaTgaG11B.1.5250.000113
ORF1ab/nsp27D7YGatTat11B.1.5370.02
ORF1ab/nsp27D7DgaTgaC11B.1.617.10.000129
ORF1ab/nsp27D7MGATATG11B.1.617.10.000129
ORF1ab/nsp27D7NGatAat11B.1.617.20.000004
ORF1ab/nsp27D7delGAT---11B.1.617.30.002985
ORF1ab/nsp27D7DgaTgaC11B.1.621.10.000506
ORF1ab/nsp27D7GgAtgGt11B.1.6230.000536
ORF1ab/nsp27D7YGatTat11B.1.6250.002353
ORF1ab/nsp27D7delGAT---11B.1.6380.052632
ORF1ab/nsp27D7YGatTat11B.270.015385
ORF1ab/nsp27D7EgaTgaG11B.400.000364
ORF1ab/nsp27D7delGAT---11C.350.000774
ORF1ab/nsp27D7GgAtgGt11C.360.000911
ORF1ab/nsp27D7DgaTgaC11D.20.000075
ORF1ab/nsp27D7DgaTgaC11P.10.000016
ORF1ab/nsp27D7CGAtTGt11P.10.000016
ORF1ab/nsp27D7DgaTgaC11P.1.100.000269
ORF1ab/nsp27D7DgaTgaC11P.1.120.000484
ORF1ab/nsp27D7delGAT---11Q.20.000613
ORF1ab/nsp27D7DgaTgaC11Q.40.000455