CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 637 & Codon = ggT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2637G637GG817GsynggCggT161415200.941762714-2716

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2637G637GggCggT15201614All0.000291
ORF1ab/nsp2637G637GggCggT214219B.1.1.70.000192
ORF1ab/nsp2637G637GggCggT162166AY.430.000718
ORF1ab/nsp2637G637GggCggT112114B.1.617.20.000422
ORF1ab/nsp2637G637GggCggT7676AY.30.000756
ORF1ab/nsp2637G637GggCggT6868B.1.4230.693878
ORF1ab/nsp2637G637GggCggT6767P.1.140.003203
ORF1ab/nsp2637G637GggCggT1966AY.440.000116
ORF1ab/nsp2637G637GggCggT4960AY.40.000076
ORF1ab/nsp2637G637GggCggT5252B.1.2911
ORF1ab/nsp2637G637GggCggT4142B.10.000376
ORF1ab/nsp2637G637GggCggT3337AY.1030.000205
ORF1ab/nsp2637G637GggCggT3334B.1.20.000291
ORF1ab/nsp2637G637GggCggT2828AY.120.10.008989
ORF1ab/nsp2637G637GggCggT2323P.10.000362
ORF1ab/nsp2637G637GggCggT1919AY.98.10.00092
ORF1ab/nsp2637G637GggCggT1919B.1.5260.000447
ORF1ab/nsp2637G637GggCggT1718AY.250.000102
ORF1ab/nsp2637G637GggCggT1617AY.1020.000424
ORF1ab/nsp2637G637GggCggT1717AY.610.001781
ORF1ab/nsp2637G637GggCggT1616B.1.1770.000211
ORF1ab/nsp2637G637GggCggT1616B.1.2430.001113
ORF1ab/nsp2637G637GggCggT1414B.1.2340.001847
ORF1ab/nsp2637G637GggCggT1313AY.46.60.000939
ORF1ab/nsp2637G637GggCggT1213AY.50.000248
ORF1ab/nsp2637G637GggCggT1313AY.700.002711
ORF1ab/nsp2637G637GggCggT1313B.1.1.5190.000516
ORF1ab/nsp2637G637GggCggT1313B.1.6210.001151
ORF1ab/nsp2637G637GggCggT1212AY.1190.000424
ORF1ab/nsp2637G637GggCggT1212C.370.001393
ORF1ab/nsp2637G637GggCggT611B.1.1600.000187
ORF1ab/nsp2637G637GggCggT1111B.1.5950.002871
ORF1ab/nsp2637G637GggCggT1010B.1.10.000181
ORF1ab/nsp2637G637GggCggT99AY.260.000255
ORF1ab/nsp2637G637GggCggT99AY.620.003922
ORF1ab/nsp2637G637GggCggT99B.1.1.2160.008014
ORF1ab/nsp2637G637GggCggT88AY.290.000126
ORF1ab/nsp2637G637GggCggT78AY.4.20.000152
ORF1ab/nsp2637G637GggCggT88B.1.1.3170.003294
ORF1ab/nsp2637G637GggCggT77AY.230.000488
ORF1ab/nsp2637G637GggCggT47AY.9.20.000147
ORF1ab/nsp2637G637GggCggT66AY.1000.000276
ORF1ab/nsp2637G637GggCggT66AY.1200.000223
ORF1ab/nsp2637G637GggCggT66AY.390.000148
ORF1ab/nsp2637G637GggCggT66AY.980.000474
ORF1ab/nsp2637G637GggCggT66B.1.3510.000178
ORF1ab/nsp2637G637GggCggT66B.1.4270.000303
ORF1ab/nsp2637G637GggCggT55AY.1050.003215
ORF1ab/nsp2637G637GggCggT55AY.5.40.001384
ORF1ab/nsp2637G637GggCggT55AY.750.00028
ORF1ab/nsp2637G637GggCggT55B.1.3890.00501
ORF1ab/nsp2637G637GggCggT55B.1.5880.00455
ORF1ab/nsp2637G637GggCggT55B.1.5960.000436
ORF1ab/nsp2637G637GggCggT55D.20.000375
ORF1ab/nsp2637G637GggCggT44AY.460.000416
ORF1ab/nsp2637G637GggCggT44AY.60.000165
ORF1ab/nsp2637G637GggCggT44B.1.1.120.029851
ORF1ab/nsp2637G637GggCggT44B.1.1.250.002274
ORF1ab/nsp2637G637GggCggT44B.1.4290.000094
ORF1ab/nsp2637G637GggCggT44B.1.5090.003463
ORF1ab/nsp2637G637GggCggT44P.1.150.000929
ORF1ab/nsp2637G637GggCggT33AY.1010.001471
ORF1ab/nsp2637G637GggCggT33AY.130.000483
ORF1ab/nsp2637G637GggCggT33AY.550.002752
ORF1ab/nsp2637G637GggCggT33AY.630.001161
ORF1ab/nsp2637G637GggCggT33B.1.130.007126
ORF1ab/nsp2637G637GggCggT13B.1.3110.000275
ORF1ab/nsp2637G637GggCggT33B.1.360.000438
ORF1ab/nsp2637G637GggCggT33B.1.5250.000339
ORF1ab/nsp2637G637GggCggT33B.1.5610.001191
ORF1ab/nsp2637G637GggCggT33B.1.5750.00091
ORF1ab/nsp2637G637GggCggT33C.60.111111
ORF1ab/nsp2637G637GggCggT22A.2.50.000998
ORF1ab/nsp2637G637GggCggT22AY.1110.000366
ORF1ab/nsp2637G637GggCggT22AY.1180.000125
ORF1ab/nsp2637G637GggCggT22AY.140.000176
ORF1ab/nsp2637G637GggCggT22AY.160.000759
ORF1ab/nsp2637G637GggCggT22AY.880.001768
ORF1ab/nsp2637G637GggCggT22AY.910.001461
ORF1ab/nsp2637G637GggCggT22B.1.1.2140.000111
ORF1ab/nsp2637G637GggCggT22B.1.1.3890.012121
ORF1ab/nsp2637G637GggCggT22B.1.177.150.001262
ORF1ab/nsp2637G637GggCggT22B.1.177.210.000153
ORF1ab/nsp2637G637GggCggT22B.1.177.40.000422
ORF1ab/nsp2637G637GggCggT22B.1.258.70.003824
ORF1ab/nsp2637G637GggCggT22B.1.3490.00143
ORF1ab/nsp2637G637GggCggT22B.1.36.80.002
ORF1ab/nsp2637G637GggCggT22B.1.438.10.000215
ORF1ab/nsp2637G637GggCggT12B.60.00091
ORF1ab/nsp2637G637GggCggT11A.190.009434
ORF1ab/nsp2637G637GggCggT11AY.1080.001103
ORF1ab/nsp2637G637GggCggT11AY.1160.000287
ORF1ab/nsp2637G637GggCggT11AY.1170.000085
ORF1ab/nsp2637G637GggCggT11AY.120.000316
ORF1ab/nsp2637G637GggCggT11AY.120.20.001285
ORF1ab/nsp2637G637GggCggT11AY.20.000356
ORF1ab/nsp2637G637GggCggT11AY.29.10.000221
ORF1ab/nsp2637G637GggCggT11AY.3.10.000085
ORF1ab/nsp2637G637GggCggT11AY.300.000396
ORF1ab/nsp2637G637GggCggT11AY.330.000067
ORF1ab/nsp2637G637GggCggT11AY.340.000097
ORF1ab/nsp2637G637GggCggT11AY.360.000148
ORF1ab/nsp2637G637GggCggT11AY.380.000499
ORF1ab/nsp2637G637GggCggT11AY.4.2.10.000149
ORF1ab/nsp2637G637GggCggT11AY.4.50.000107
ORF1ab/nsp2637G637GggCggT11AY.450.000122
ORF1ab/nsp2637G637GggCggT11AY.470.000031
ORF1ab/nsp2637G637GggCggT11AY.510.000909
ORF1ab/nsp2637G637GggCggT11AY.600.000938
ORF1ab/nsp2637G637GggCggT11AY.720.001361
ORF1ab/nsp2637G637GggCggT11AY.740.000116
ORF1ab/nsp2637G637GggCggT11AY.75.10.00018
ORF1ab/nsp2637G637GggCggT11AY.9.10.000084
ORF1ab/nsp2637G637GggCggT11B0.000128
ORF1ab/nsp2637G637GggCggT11B.1.1.10.000327
ORF1ab/nsp2637G637GggCggT11B.1.1.1700.001247
ORF1ab/nsp2637G637GggCggT11B.1.1.1760.000439
ORF1ab/nsp2637G637GggCggT11B.1.1.2650.003155
ORF1ab/nsp2637G637GggCggT11B.1.1.2660.012195
ORF1ab/nsp2637G637GggCggT11B.1.1.2880.001916
ORF1ab/nsp2637G637GggCggT11B.1.1.3180.000302
ORF1ab/nsp2637G637GggCggT11B.1.1.3720.000689
ORF1ab/nsp2637G637GggCggT11B.1.1.4340.000349
ORF1ab/nsp2637G637GggCggT11B.1.1.630.000386
ORF1ab/nsp2637G637GggCggT11B.1.1.740.00431
ORF1ab/nsp2637G637GggCggT11B.1.160.160.000929
ORF1ab/nsp2637G637GggCggT11B.1.1700.00431
ORF1ab/nsp2637G637GggCggT11B.1.177.770.000726
ORF1ab/nsp2637G637GggCggT11B.1.177.810.000189
ORF1ab/nsp2637G637GggCggT11B.1.177.860.000183
ORF1ab/nsp2637G637GggCggT11B.1.177.870.000728
ORF1ab/nsp2637G637GggCggT11B.1.2100.002132
ORF1ab/nsp2637G637GggCggT11B.1.214.20.0006
ORF1ab/nsp2637G637GggCggT11B.1.258.30.001675
ORF1ab/nsp2637G637GggCggT11B.1.2600.003344
ORF1ab/nsp2637G637GggCggT11B.1.3140.007519
ORF1ab/nsp2637G637GggCggT11B.1.3460.001311
ORF1ab/nsp2637G637GggCggT11B.1.351.20.000303
ORF1ab/nsp2637G637GggCggT11B.1.351.30.000876
ORF1ab/nsp2637G637GggCggT11B.1.351.50.0006
ORF1ab/nsp2637G637GggCggT11B.1.36.170.000494
ORF1ab/nsp2637G637GggCggT11B.1.3670.000792
ORF1ab/nsp2637G637GggCggT11B.1.3710.001122
ORF1ab/nsp2637G637GggCggT11B.1.4080.00369
ORF1ab/nsp2637G637GggCggT11B.1.4330.003195
ORF1ab/nsp2637G637GggCggT11B.1.4560.003268
ORF1ab/nsp2637G637GggCggT11B.1.466.20.000391
ORF1ab/nsp2637G637GggCggT11B.1.4740.001901
ORF1ab/nsp2637G637GggCggT11B.1.4970.000315
ORF1ab/nsp2637G637GggCggT11B.1.5670.003333
ORF1ab/nsp2637G637GggCggT11B.1.5680.001111
ORF1ab/nsp2637G637GggCggT11B.1.5870.001898
ORF1ab/nsp2637G637GggCggT11B.1.6340.003425
ORF1ab/nsp2637G637GggCggT11B.1.6370.000073
ORF1ab/nsp2637G637GggCggT11B.4.50.011905
ORF1ab/nsp2637G637GggCggT11C.30.10.006711
ORF1ab/nsp2637G637GggCggT11N.50.001767
ORF1ab/nsp2637G637GggCggT11Q.30.000145
ORF1ab/nsp2637G637GggCggT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.