CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 634 | T634I | T814I | nonsyn | aCa | aTa | 18147 | 18145 | 0.99989 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634I | T814I | nonsyn | aCA | aTT | 18147 | 2 | 0.000110211 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634T | T814T | syn | acA | acG | 287 | 220 | 0.766551 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634T | T814T | syn | acA | acC | 287 | 52 | 0.181185 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634T | T814T | syn | acA | acT | 287 | 15 | 0.0522648 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634A | T814A | nonsyn | Aca | Gca | 124 | 124 | 1 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634del | T814del | del | ACA | --- | 67 | 67 | 1 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634K | T814K | nonsyn | aCa | aAa | 40 | 40 | 1 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634S | T814S | nonsyn | Aca | Tca | 15 | 15 | 1 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634del1 | T814del1 | del | Aca | -ca | 6 | 4 | 0.666667 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634del1 | T814del1 | del | acA | ac- | 6 | 2 | 0.333333 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634P | T814P | nonsyn | Aca | Cca | 3 | 3 | 1 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634R | T814R | nonsyn | aCa | aGa | 2 | 2 | 1 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634E | T814E | nonsyn | ACA | GAG | 1 | 1 | 1 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634X | T814X | nonsyn | ACa | TAa | 1 | 1 | 1 | 2705-2707 |
ORF1ab/nsp2 | 634 | T634N | T814N | nonsyn | aCA | aAC | 1 | 1 | 1 | 2705-2707 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 18145 | 18147 | All | 0.00347 |
ORF1ab/nsp2 | 634 | T634I | aCA | aTT | 2 | 18147 | All | 0 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 9001 | 9001 | AY.4 | 0.014009 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1686 | 1686 | B.1.1.7 | 0.001509 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1352 | 1352 | AY.4.1 | 0.99705 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 909 | 909 | B.1.429 | 0.021388 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 632 | 632 | B.1.2 | 0.005565 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 504 | 504 | B.1.416.1 | 0.7875 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 328 | 328 | AW.1 | 1 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 322 | 322 | B.1.1.317 | 0.132565 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 298 | 298 | B.1.617.2 | 0.001122 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 220 | 287 | All | 0.000042 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 52 | 287 | All | 0.00001 |
ORF1ab/nsp2 | 634 | T634T | acA | acT | 15 | 287 | All | 0.000003 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 255 | 255 | AY.43 | 0.00113 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 187 | 187 | AY.44 | 0.001138 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 187 | 187 | B.1.258.17 | 0.019443 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 172 | 172 | AY.25 | 0.001035 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 133 | 133 | B.1 | 0.001218 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 124 | 124 | All | 0.000024 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 82 | 87 | AY.4 | 0.000128 |
ORF1ab/nsp2 | 634 | T634T | acA | acT | 3 | 87 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 2 | 87 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 81 | 82 | B.1.1 | 0.001469 |
ORF1ab/nsp2 | 634 | T634I | aCA | aTT | 1 | 82 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 74 | 74 | AY.39 | 0.001829 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 72 | 72 | AY.3 | 0.000716 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 71 | 71 | B.40 | 0.025865 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 70 | 70 | AY.3.1 | 0.005968 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 67 | 67 | All | 0.000013 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 65 | 65 | AY.6 | 0.002673 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 65 | 65 | AY.65 | 0.034648 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 64 | 64 | B.1.160 | 0.001996 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 61 | 61 | AY.119 | 0.002154 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 60 | 60 | B.1.258 | 0.003993 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 59 | 59 | B.1.177 | 0.000777 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 59 | 59 | P.1 | 0.000929 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 53 | 53 | B.1.1.123 | 0.946429 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 49 | 50 | AY.103 | 0.000304 |
ORF1ab/nsp2 | 634 | T634I | aCA | aTT | 1 | 50 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 49 | 49 | B.1.243 | 0.00341 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 48 | 48 | B.1.429.1 | 0.578313 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 47 | 47 | AY.20 | 0.001827 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 40 | 40 | All | 0.000008 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 38 | 38 | B.1.596 | 0.003311 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 35 | 35 | AY.102 | 0.000928 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 30 | 33 | AY.3 | 0.000298 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 2 | 33 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 634 | T634T | acA | acT | 1 | 33 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 33 | 33 | AY.47 | 0.001026 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 33 | 33 | AY.75 | 0.001849 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 32 | 32 | B.1.427 | 0.001616 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 31 | 31 | AY.52 | 0.025244 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 29 | 29 | B.1.526 | 0.000682 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 26 | 26 | AY.36 | 0.003854 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 24 | 24 | AY.29.1 | 0.005292 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 23 | 23 | B.1.1.519 | 0.000913 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 22 | 22 | AY.4 | 0.000034 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 18 | 22 | B.1.1.7 | 0.000016 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 4 | 22 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 22 | 22 | B.1.177.72 | 0.074576 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 20 | 20 | AY.94 | 0.008853 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 20 | 20 | B.1.375 | 0.016393 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 19 | 19 | AY.42 | 0.000764 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 19 | 19 | B.1.351 | 0.000565 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 18 | 18 | AY.7 | 0.003528 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 18 | 18 | B.1.1.214 | 0.000998 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 17 | 17 | AY.16 | 0.006454 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 16 | 16 | AY.14 | 0.001408 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 16 | 16 | AY.43 | 0.000071 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 16 | 16 | C.37 | 0.001857 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 15 | 15 | All | 0.000003 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 15 | 15 | B.1.443 | 0.070093 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 13 | 13 | AY.29 | 0.000205 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 13 | 13 | AY.46 | 0.001353 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 13 | 13 | B.1.1.232 | 0.023593 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 13 | 13 | B.1.1.318 | 0.003923 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 13 | 13 | B.1.422 | 0.010561 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 12 | 12 | AY.118 | 0.000752 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 12 | 12 | AY.72 | 0.016327 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 11 | 11 | AY.35 | 0.002564 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 11 | 11 | AY.45 | 0.001339 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 11 | 11 | B.1.466.2 | 0.004304 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 11 | 11 | P.1.16 | 0.004115 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 10 | 10 | AY.9.2 | 0.000367 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 10 | 10 | B.1.1.157 | 0.009132 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 9 | 10 | B.1.429 | 0.000212 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 10 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 10 | 10 | Q.8 | 0.001649 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 9 | 9 | A | 0.003483 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 9 | 9 | AY.117 | 0.000761 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 9 | 9 | P.1.15 | 0.002091 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 7 | 7 | AY.3.1 | 0.000597 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 7 | 7 | AY.89 | 0.034314 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp2 | 634 | T634del1 | Aca | -ca | 4 | 6 | All | 0.000001 |
ORF1ab/nsp2 | 634 | T634del1 | acA | ac- | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 6 | 6 | AY.7.2 | 0.003356 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 6 | 6 | AY.79 | 0.007264 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 6 | 6 | B.1.218 | 0.030928 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 6 | 6 | C.26 | 0.044118 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 6 | 6 | N.2 | 0.230769 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 4 | 5 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 5 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 5 | 5 | B.1.1.216 | 0.004452 |
ORF1ab/nsp2 | 634 | T634T | acA | acT | 4 | 5 | B.1.1.241 | 0.008282 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 5 | B.1.1.241 | 0.00207 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 5 | 5 | B.1.160.32 | 0.021459 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 4 | 5 | B.1.177 | 0.000053 |
ORF1ab/nsp2 | 634 | T634T | acA | acT | 1 | 5 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 5 | 5 | B.1.177.73 | 0.002831 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 5 | 5 | B.1.517 | 0.002135 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | AY.62 | 0.001743 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | B.1.1.398 | 0.012903 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 3 | 4 | B.1.2 | 0.000026 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 4 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | B.1.582 | 0.001963 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 4 | 4 | P.3 | 0.00638 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | A | 0.001161 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp2 | 634 | T634P | Aca | Cca | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B | 0.000383 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 634 | T634T | acA | acT | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B.1.1.227 | 0.013043 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B.1.1.309 | 0.017544 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B.1.1.335 | 0.038961 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 3 | 3 | B.1.177.28 | 0.022222 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B.1.389 | 0.003006 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B.1.408 | 0.01107 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B.1.426 | 0.003027 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | N.4 | 0.012766 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp2 | 634 | T634R | aCa | aGa | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp2 | 634 | T634T | acA | acT | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.253 | 0.005013 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.282 | 0.023256 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.299 | 0.02439 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.329 | 0.007692 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.380 | 0.019608 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.160.7 | 0.004158 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.221.4 | 0.008333 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.332 | 0.006993 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.508 | 0.051282 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp2 | 634 | T634T | acA | acT | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp2 | 634 | T634P | Aca | Cca | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp2 | 634 | T634T | acA | acT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AD.1 | 0.004115 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp2 | 634 | T634X | ACa | TAa | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 634 | T634E | ACA | GAG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 634 | T634N | aCA | aAC | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 634 | T634del1 | Aca | -ca | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 634 | T634R | aCa | aGa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 634 | T634del1 | Aca | -ca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 634 | T634T | acA | acT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 634 | T634X | ACa | TAa | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 634 | T634del1 | acA | ac- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.136 | 0.021277 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.152 | 0.04 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 1 | 1 | B.1.1.327 | 0.1 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp2 | 634 | T634T | acA | acT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp2 | 634 | T634E | ACA | GAG | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 634 | T634del1 | Aca | -ca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 634 | T634R | aCa | aGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.26 | 0.006993 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 634 | T634P | Aca | Cca | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp2 | 634 | T634del1 | acA | ac- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 634 | T634del1 | Aca | -ca | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.476 | 0.1 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.510 | 0.026316 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.539 | 0.017544 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 634 | T634N | aCA | aAC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 634 | T634K | aCa | aAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 634 | T634T | acA | acC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp2 | 634 | T634S | Aca | Tca | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp2 | 634 | T634P | Aca | Cca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp2 | 634 | T634I | aCa | aTa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 634 | T634T | acA | acG | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp2 | 634 | T634del | ACA | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 634 | T634A | Aca | Gca | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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