CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 634

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2634T634IT814InonsynaCaaTa18147181450.999892705-2707
ORF1ab/nsp2634T634IT814InonsynaCAaTT1814720.0001102112705-2707
ORF1ab/nsp2634T634TT814TsynacAacG2872200.7665512705-2707
ORF1ab/nsp2634T634TT814TsynacAacC287520.1811852705-2707
ORF1ab/nsp2634T634TT814TsynacAacT287150.05226482705-2707
ORF1ab/nsp2634T634AT814AnonsynAcaGca12412412705-2707
ORF1ab/nsp2634T634delT814deldelACA---676712705-2707
ORF1ab/nsp2634T634KT814KnonsynaCaaAa404012705-2707
ORF1ab/nsp2634T634ST814SnonsynAcaTca151512705-2707
ORF1ab/nsp2634T634del1T814del1delAca-ca640.6666672705-2707
ORF1ab/nsp2634T634del1T814del1delacAac-620.3333332705-2707
ORF1ab/nsp2634T634PT814PnonsynAcaCca3312705-2707
ORF1ab/nsp2634T634RT814RnonsynaCaaGa2212705-2707
ORF1ab/nsp2634T634ET814EnonsynACAGAG1112705-2707
ORF1ab/nsp2634T634XT814XnonsynACaTAa1112705-2707
ORF1ab/nsp2634T634NT814NnonsynaCAaAC1112705-2707

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2634T634IaCaaTa1814518147All0.00347
ORF1ab/nsp2634T634IaCAaTT218147All0
ORF1ab/nsp2634T634IaCaaTa90019001AY.40.014009
ORF1ab/nsp2634T634IaCaaTa16861686B.1.1.70.001509
ORF1ab/nsp2634T634IaCaaTa13521352AY.4.10.99705
ORF1ab/nsp2634T634IaCaaTa909909B.1.4290.021388
ORF1ab/nsp2634T634IaCaaTa632632B.1.20.005565
ORF1ab/nsp2634T634IaCaaTa504504B.1.416.10.7875
ORF1ab/nsp2634T634IaCaaTa328328AW.11
ORF1ab/nsp2634T634IaCaaTa322322B.1.1.3170.132565
ORF1ab/nsp2634T634IaCaaTa298298B.1.617.20.001122
ORF1ab/nsp2634T634TacAacG220287All0.000042
ORF1ab/nsp2634T634TacAacC52287All0.00001
ORF1ab/nsp2634T634TacAacT15287All0.000003
ORF1ab/nsp2634T634IaCaaTa255255AY.430.00113
ORF1ab/nsp2634T634IaCaaTa187187AY.440.001138
ORF1ab/nsp2634T634IaCaaTa187187B.1.258.170.019443
ORF1ab/nsp2634T634IaCaaTa172172AY.250.001035
ORF1ab/nsp2634T634IaCaaTa133133B.10.001218
ORF1ab/nsp2634T634AAcaGca124124All0.000024
ORF1ab/nsp2634T634TacAacG8287AY.40.000128
ORF1ab/nsp2634T634TacAacT387AY.40.000005
ORF1ab/nsp2634T634TacAacC287AY.40.000003
ORF1ab/nsp2634T634IaCaaTa8182B.1.10.001469
ORF1ab/nsp2634T634IaCAaTT182B.1.10.000018
ORF1ab/nsp2634T634IaCaaTa7474AY.390.001829
ORF1ab/nsp2634T634IaCaaTa7272AY.30.000716
ORF1ab/nsp2634T634IaCaaTa7171B.400.025865
ORF1ab/nsp2634T634IaCaaTa7070AY.3.10.005968
ORF1ab/nsp2634T634delACA---6767All0.000013
ORF1ab/nsp2634T634IaCaaTa6565AY.60.002673
ORF1ab/nsp2634T634IaCaaTa6565AY.650.034648
ORF1ab/nsp2634T634IaCaaTa6464B.1.1600.001996
ORF1ab/nsp2634T634IaCaaTa6161AY.1190.002154
ORF1ab/nsp2634T634IaCaaTa6060B.1.2580.003993
ORF1ab/nsp2634T634IaCaaTa5959B.1.1770.000777
ORF1ab/nsp2634T634IaCaaTa5959P.10.000929
ORF1ab/nsp2634T634IaCaaTa5353B.1.1.1230.946429
ORF1ab/nsp2634T634IaCaaTa4950AY.1030.000304
ORF1ab/nsp2634T634IaCAaTT150AY.1030.000006
ORF1ab/nsp2634T634IaCaaTa4949B.1.2430.00341
ORF1ab/nsp2634T634TacAacG4848B.1.429.10.578313
ORF1ab/nsp2634T634IaCaaTa4747AY.200.001827
ORF1ab/nsp2634T634KaCaaAa4040All0.000008
ORF1ab/nsp2634T634IaCaaTa3838B.1.5960.003311
ORF1ab/nsp2634T634IaCaaTa3535AY.1020.000928
ORF1ab/nsp2634T634TacAacC3033AY.30.000298
ORF1ab/nsp2634T634TacAacG233AY.30.00002
ORF1ab/nsp2634T634TacAacT133AY.30.00001
ORF1ab/nsp2634T634IaCaaTa3333AY.470.001026
ORF1ab/nsp2634T634IaCaaTa3333AY.750.001849
ORF1ab/nsp2634T634IaCaaTa3232B.1.4270.001616
ORF1ab/nsp2634T634IaCaaTa3131AY.520.025244
ORF1ab/nsp2634T634IaCaaTa2929B.1.5260.000682
ORF1ab/nsp2634T634IaCaaTa2626AY.360.003854
ORF1ab/nsp2634T634AAcaGca2626B.1.1.70.000023
ORF1ab/nsp2634T634AAcaGca2424AY.29.10.005292
ORF1ab/nsp2634T634IaCaaTa2323B.1.1.5190.000913
ORF1ab/nsp2634T634KaCaaAa2222AY.40.000034
ORF1ab/nsp2634T634TacAacG1822B.1.1.70.000016
ORF1ab/nsp2634T634TacAacC422B.1.1.70.000004
ORF1ab/nsp2634T634IaCaaTa2222B.1.177.720.074576
ORF1ab/nsp2634T634IaCaaTa2020AY.940.008853
ORF1ab/nsp2634T634IaCaaTa2020B.1.3750.016393
ORF1ab/nsp2634T634IaCaaTa1919AY.420.000764
ORF1ab/nsp2634T634IaCaaTa1919AY.50.000392
ORF1ab/nsp2634T634IaCaaTa1919B.1.3510.000565
ORF1ab/nsp2634T634IaCaaTa1818AY.70.003528
ORF1ab/nsp2634T634IaCaaTa1818B.1.1.2140.000998
ORF1ab/nsp2634T634IaCaaTa1717AY.160.006454
ORF1ab/nsp2634T634IaCaaTa1616AY.140.001408
ORF1ab/nsp2634T634AAcaGca1616AY.430.000071
ORF1ab/nsp2634T634IaCaaTa1616C.370.001857
ORF1ab/nsp2634T634SAcaTca1515All0.000003
ORF1ab/nsp2634T634IaCaaTa1515B.1.4430.070093
ORF1ab/nsp2634T634IaCaaTa1414AY.1000.000644
ORF1ab/nsp2634T634IaCaaTa1313AY.290.000205
ORF1ab/nsp2634T634IaCaaTa1313AY.460.001353
ORF1ab/nsp2634T634IaCaaTa1313B.1.1.2320.023593
ORF1ab/nsp2634T634IaCaaTa1313B.1.1.3180.003923
ORF1ab/nsp2634T634IaCaaTa1313B.1.4220.010561
ORF1ab/nsp2634T634IaCaaTa1212AY.1180.000752
ORF1ab/nsp2634T634IaCaaTa1212AY.720.016327
ORF1ab/nsp2634T634delACA---1212B.10.00011
ORF1ab/nsp2634T634IaCaaTa1111AY.350.002564
ORF1ab/nsp2634T634IaCaaTa1111AY.450.001339
ORF1ab/nsp2634T634IaCaaTa1111B.1.466.20.004304
ORF1ab/nsp2634T634IaCaaTa1111P.1.160.004115
ORF1ab/nsp2634T634IaCaaTa1010AY.9.20.000367
ORF1ab/nsp2634T634AAcaGca1010B.1.1.1570.009132
ORF1ab/nsp2634T634TacAacG910B.1.4290.000212
ORF1ab/nsp2634T634TacAacC110B.1.4290.000024
ORF1ab/nsp2634T634IaCaaTa1010Q.80.001649
ORF1ab/nsp2634T634AAcaGca99A0.003483
ORF1ab/nsp2634T634IaCaaTa99AY.1170.000761
ORF1ab/nsp2634T634IaCaaTa99P.1.150.002091
ORF1ab/nsp2634T634IaCaaTa77AY.260.000198
ORF1ab/nsp2634T634TacAacG77AY.3.10.000597
ORF1ab/nsp2634T634IaCaaTa77AY.4.20.000152
ORF1ab/nsp2634T634AAcaGca77AY.440.000043
ORF1ab/nsp2634T634IaCaaTa77AY.46.60.000505
ORF1ab/nsp2634T634IaCaaTa77AY.890.034314
ORF1ab/nsp2634T634delACA---77B.1.1.70.000006
ORF1ab/nsp2634T634TacAacG77B.1.1600.000218
ORF1ab/nsp2634T634IaCaaTa77B.1.36.290.003621
ORF1ab/nsp2634T634IaCaaTa77B.1.6370.000512
ORF1ab/nsp2634T634delACA---660.333333
ORF1ab/nsp2634T634del1Aca-ca46All0.000001
ORF1ab/nsp2634T634del1acAac-26All0
ORF1ab/nsp2634T634IaCaaTa66AY.1200.000223
ORF1ab/nsp2634T634IaCaaTa66AY.7.20.003356
ORF1ab/nsp2634T634IaCaaTa66AY.790.007264
ORF1ab/nsp2634T634IaCaaTa66AY.99.20.000553
ORF1ab/nsp2634T634KaCaaAa66B.1.1.70.000005
ORF1ab/nsp2634T634IaCaaTa66B.1.2180.030928
ORF1ab/nsp2634T634IaCaaTa66B.1.2210.000426
ORF1ab/nsp2634T634IaCaaTa66B.1.2400.001293
ORF1ab/nsp2634T634IaCaaTa66B.1.5250.000679
ORF1ab/nsp2634T634TacAacG66B.1.617.20.000023
ORF1ab/nsp2634T634IaCaaTa66C.260.044118
ORF1ab/nsp2634T634IaCaaTa66N.20.230769
ORF1ab/nsp2634T634IaCaaTa55AY.230.000349
ORF1ab/nsp2634T634TacAacG45AY.430.000018
ORF1ab/nsp2634T634TacAacC15AY.430.000004
ORF1ab/nsp2634T634IaCaaTa55AY.980.000395
ORF1ab/nsp2634T634IaCaaTa55B.1.1.2160.004452
ORF1ab/nsp2634T634TacAacT45B.1.1.2410.008282
ORF1ab/nsp2634T634TacAacG15B.1.1.2410.00207
ORF1ab/nsp2634T634IaCaaTa55B.1.160.320.021459
ORF1ab/nsp2634T634TacAacG45B.1.1770.000053
ORF1ab/nsp2634T634TacAacT15B.1.1770.000013
ORF1ab/nsp2634T634IaCaaTa55B.1.177.730.002831
ORF1ab/nsp2634T634IaCaaTa55B.1.177.810.000947
ORF1ab/nsp2634T634IaCaaTa55B.1.2340.00066
ORF1ab/nsp2634T634IaCaaTa55B.1.3690.001426
ORF1ab/nsp2634T634IaCaaTa55B.1.5170.002135
ORF1ab/nsp2634T634IaCaaTa55D.20.000375
ORF1ab/nsp2634T634IaCaaTa55Q.10.000632
ORF1ab/nsp2634T634IaCaaTa44AY.1130.00057
ORF1ab/nsp2634T634IaCaaTa44AY.330.000267
ORF1ab/nsp2634T634AAcaGca44AY.40.000006
ORF1ab/nsp2634T634IaCaaTa44AY.4.50.00043
ORF1ab/nsp2634T634IaCaaTa44AY.540.000381
ORF1ab/nsp2634T634IaCaaTa44AY.620.001743
ORF1ab/nsp2634T634IaCaaTa44AY.98.10.000194
ORF1ab/nsp2634T634IaCaaTa44B.1.1.3060.001754
ORF1ab/nsp2634T634IaCaaTa44B.1.1.3980.012903
ORF1ab/nsp2634T634IaCaaTa44B.1.1.4320.005063
ORF1ab/nsp2634T634AAcaGca44B.1.20.000035
ORF1ab/nsp2634T634TacAacG34B.1.20.000026
ORF1ab/nsp2634T634TacAacC14B.1.20.000009
ORF1ab/nsp2634T634IaCaaTa44B.1.351.20.00121
ORF1ab/nsp2634T634IaCaaTa44B.1.5820.001963
ORF1ab/nsp2634T634IaCaaTa44B.1.6210.000354
ORF1ab/nsp2634T634IaCaaTa44P.1.140.000191
ORF1ab/nsp2634T634IaCaaTa44P.20.000747
ORF1ab/nsp2634T634IaCaaTa44P.30.00638
ORF1ab/nsp2634T634IaCaaTa33A0.001161
ORF1ab/nsp2634T634IaCaaTa33A.2.5.20.004717
ORF1ab/nsp2634T634PAcaCca33All0.000001
ORF1ab/nsp2634T634IaCaaTa33AY.10.001187
ORF1ab/nsp2634T634TacAacG33AY.1030.000019
ORF1ab/nsp2634T634IaCaaTa33AY.1050.001929
ORF1ab/nsp2634T634IaCaaTa33AY.1100.000338
ORF1ab/nsp2634T634TacAacG23AY.250.000012
ORF1ab/nsp2634T634TacAacC13AY.250.000006
ORF1ab/nsp2634T634IaCaaTa33AY.39.10.000119
ORF1ab/nsp2634T634IaCaaTa33AY.480.001395
ORF1ab/nsp2634T634KaCaaAa33AY.60.000123
ORF1ab/nsp2634T634IaCaaTa33AY.610.000314
ORF1ab/nsp2634T634IaCaaTa33AY.640.001786
ORF1ab/nsp2634T634IaCaaTa33AY.700.000626
ORF1ab/nsp2634T634IaCaaTa33AY.740.000347
ORF1ab/nsp2634T634IaCaaTa33AY.820.004071
ORF1ab/nsp2634T634IaCaaTa33B0.000383
ORF1ab/nsp2634T634delACA---33B.1.10.000054
ORF1ab/nsp2634T634TacAacG23B.1.10.000036
ORF1ab/nsp2634T634TacAacT13B.1.10.000018
ORF1ab/nsp2634T634IaCaaTa33B.1.1.10.00098
ORF1ab/nsp2634T634IaCaaTa33B.1.1.2270.013043
ORF1ab/nsp2634T634IaCaaTa33B.1.1.280.000934
ORF1ab/nsp2634T634IaCaaTa33B.1.1.3090.017544
ORF1ab/nsp2634T634delACA---33B.1.1.330.001263
ORF1ab/nsp2634T634IaCaaTa33B.1.1.330.001263
ORF1ab/nsp2634T634IaCaaTa33B.1.1.3350.038961
ORF1ab/nsp2634T634AAcaGca33B.1.177.280.022222
ORF1ab/nsp2634T634IaCaaTa33B.1.3890.003006
ORF1ab/nsp2634T634IaCaaTa33B.1.4080.01107
ORF1ab/nsp2634T634IaCaaTa33B.1.4260.003027
ORF1ab/nsp2634T634delACA---33B.1.4290.000071
ORF1ab/nsp2634T634IaCaaTa33B.1.4970.000944
ORF1ab/nsp2634T634IaCaaTa33B.1.5640.001278
ORF1ab/nsp2634T634IaCaaTa33N.40.012766
ORF1ab/nsp2634T634IaCaaTa33Q.30.000435
ORF1ab/nsp2634T634IaCaaTa33R.10.00027
ORF1ab/nsp2634T634IaCaaTa22AD.20.000438
ORF1ab/nsp2634T634RaCaaGa22All0
ORF1ab/nsp2634T634IaCaaTa22AY.1070.000932
ORF1ab/nsp2634T634IaCaaTa22AY.1140.000462
ORF1ab/nsp2634T634IaCaaTa22AY.116.10.000623
ORF1ab/nsp2634T634KaCaaAa22AY.1200.000074
ORF1ab/nsp2634T634IaCaaTa22AY.120.10.000642
ORF1ab/nsp2634T634IaCaaTa22AY.16.10.00094
ORF1ab/nsp2634T634AAcaGca22AY.230.000139
ORF1ab/nsp2634T634SAcaTca22AY.250.000012
ORF1ab/nsp2634T634AAcaGca22AY.250.000012
ORF1ab/nsp2634T634AAcaGca22AY.260.000057
ORF1ab/nsp2634T634IaCaaTa22AY.29.10.000441
ORF1ab/nsp2634T634IaCaaTa22AY.4.2.10.000298
ORF1ab/nsp2634T634AAcaGca22AY.420.00008
ORF1ab/nsp2634T634IaCaaTa22AY.590.001059
ORF1ab/nsp2634T634TacAacC22AY.690.000373
ORF1ab/nsp2634T634IaCaaTa22AY.90.000135
ORF1ab/nsp2634T634TacAacT12B.10.000009
ORF1ab/nsp2634T634TacAacC12B.10.000009
ORF1ab/nsp2634T634IaCaaTa22B.1.1.1610.007067
ORF1ab/nsp2634T634IaCaaTa22B.1.1.2200.003717
ORF1ab/nsp2634T634IaCaaTa22B.1.1.250.001137
ORF1ab/nsp2634T634IaCaaTa22B.1.1.2530.005013
ORF1ab/nsp2634T634IaCaaTa22B.1.1.2630.003115
ORF1ab/nsp2634T634IaCaaTa22B.1.1.2820.023256
ORF1ab/nsp2634T634IaCaaTa22B.1.1.2840.000215
ORF1ab/nsp2634T634IaCaaTa22B.1.1.2910.001485
ORF1ab/nsp2634T634IaCaaTa22B.1.1.2990.02439
ORF1ab/nsp2634T634IaCaaTa22B.1.1.3110.000716
ORF1ab/nsp2634T634delACA---22B.1.1.3150.016949
ORF1ab/nsp2634T634IaCaaTa22B.1.1.3290.007692
ORF1ab/nsp2634T634delACA---22B.1.1.3480.001592
ORF1ab/nsp2634T634IaCaaTa22B.1.1.3800.019608
ORF1ab/nsp2634T634IaCaaTa22B.1.1.4640.002946
ORF1ab/nsp2634T634IaCaaTa22B.1.1.630.000772
ORF1ab/nsp2634T634IaCaaTa22B.1.160.70.004158
ORF1ab/nsp2634T634SAcaTca22B.1.1770.000026
ORF1ab/nsp2634T634delACA---22B.1.1770.000026
ORF1ab/nsp2634T634IaCaaTa22B.1.177.210.000153
ORF1ab/nsp2634T634IaCaaTa22B.1.177.600.000437
ORF1ab/nsp2634T634delACA---22B.1.20.000018
ORF1ab/nsp2634T634IaCaaTa22B.1.221.40.008333
ORF1ab/nsp2634T634IaCaaTa22B.1.3110.000549
ORF1ab/nsp2634T634IaCaaTa22B.1.3320.006993
ORF1ab/nsp2634T634IaCaaTa22B.1.36.170.000988
ORF1ab/nsp2634T634IaCaaTa22B.1.36.220.002415
ORF1ab/nsp2634T634IaCaaTa22B.1.36.80.002
ORF1ab/nsp2634T634IaCaaTa22B.1.3670.001585
ORF1ab/nsp2634T634delACA---22B.1.4240.016129
ORF1ab/nsp2634T634IaCaaTa22B.1.438.10.000215
ORF1ab/nsp2634T634IaCaaTa22B.1.4590.008163
ORF1ab/nsp2634T634IaCaaTa22B.1.5080.051282
ORF1ab/nsp2634T634delACA---22B.1.5260.000047
ORF1ab/nsp2634T634IaCaaTa22B.1.5950.000522
ORF1ab/nsp2634T634IaCaaTa22B.1.6090.000959
ORF1ab/nsp2634T634TacAacG22B.1.6090.000959
ORF1ab/nsp2634T634IaCaaTa22B.1.617.10.000258
ORF1ab/nsp2634T634SAcaTca22B.1.617.20.000008
ORF1ab/nsp2634T634AAcaGca22B.1.617.20.000008
ORF1ab/nsp2634T634SAcaTca22D.20.00015
ORF1ab/nsp2634T634TacAacC12D.20.000075
ORF1ab/nsp2634T634TacAacT12D.20.000075
ORF1ab/nsp2634T634delACA---22N.60.014184
ORF1ab/nsp2634T634delACA---22P.10.000032
ORF1ab/nsp2634T634TacAacC12P.10.000016
ORF1ab/nsp2634T634TacAacG12P.10.000016
ORF1ab/nsp2634T634AAcaGca22P.1.150.000465
ORF1ab/nsp2634T634IaCaaTa22P.1.170.000324
ORF1ab/nsp2634T634SAcaTca11A.2.40.003367
ORF1ab/nsp2634T634PAcaCca11A.2.40.003367
ORF1ab/nsp2634T634IaCaaTa11A.2.50.000499
ORF1ab/nsp2634T634IaCaaTa11A.30.002096
ORF1ab/nsp2634T634TacAacT11A.30.002096
ORF1ab/nsp2634T634IaCaaTa11AD.10.004115
ORF1ab/nsp2634T634IaCaaTa11AE.80.000489
ORF1ab/nsp2634T634IaCaaTa11AL.10.012987
ORF1ab/nsp2634T634XACaTAa11All0
ORF1ab/nsp2634T634EACAGAG11All0
ORF1ab/nsp2634T634NaCAaAC11All0
ORF1ab/nsp2634T634IaCaaTa11AP.10.001502
ORF1ab/nsp2634T634TacAacC11AY.1020.000027
ORF1ab/nsp2634T634KaCaaAa11AY.1030.000006
ORF1ab/nsp2634T634TacAacG11AY.1050.000643
ORF1ab/nsp2634T634del1Aca-ca11AY.1060.000335
ORF1ab/nsp2634T634IaCaaTa11AY.1090.00074
ORF1ab/nsp2634T634IaCaaTa11AY.110.001339
ORF1ab/nsp2634T634IaCaaTa11AY.1110.000183
ORF1ab/nsp2634T634TacAacG11AY.1180.000063
ORF1ab/nsp2634T634TacAacC11AY.1200.000037
ORF1ab/nsp2634T634IaCaaTa11AY.130.000161
ORF1ab/nsp2634T634TacAacG11AY.140.000088
ORF1ab/nsp2634T634AAcaGca11AY.200.000039
ORF1ab/nsp2634T634delACA---11AY.250.000006
ORF1ab/nsp2634T634RaCaaGa11AY.260.000028
ORF1ab/nsp2634T634delACA---11AY.260.000028
ORF1ab/nsp2634T634TacAacG11AY.260.000028
ORF1ab/nsp2634T634IaCaaTa11AY.270.000065
ORF1ab/nsp2634T634KaCaaAa11AY.290.000016
ORF1ab/nsp2634T634IaCaaTa11AY.300.000396
ORF1ab/nsp2634T634TacAacC11AY.330.000067
ORF1ab/nsp2634T634IaCaaTa11AY.340.000097
ORF1ab/nsp2634T634IaCaaTa11AY.34.10.00051
ORF1ab/nsp2634T634TacAacC11AY.360.000148
ORF1ab/nsp2634T634IaCaaTa11AY.370.000316
ORF1ab/nsp2634T634IaCaaTa11AY.380.000499
ORF1ab/nsp2634T634IaCaaTa11AY.4.30.000842
ORF1ab/nsp2634T634IaCaaTa11AY.4.40.000409
ORF1ab/nsp2634T634delACA---11AY.400.000964
ORF1ab/nsp2634T634KaCaaAa11AY.430.000004
ORF1ab/nsp2634T634del1Aca-ca11AY.440.000006
ORF1ab/nsp2634T634delACA---11AY.440.000006
ORF1ab/nsp2634T634TacAacG11AY.440.000006
ORF1ab/nsp2634T634SAcaTca11AY.450.000122
ORF1ab/nsp2634T634TacAacT11AY.460.000104
ORF1ab/nsp2634T634IaCaaTa11AY.46.10.001027
ORF1ab/nsp2634T634KaCaaAa11AY.46.20.000635
ORF1ab/nsp2634T634AAcaGca11AY.46.20.000635
ORF1ab/nsp2634T634IaCaaTa11AY.46.20.000635
ORF1ab/nsp2634T634IaCaaTa11AY.46.50.000198
ORF1ab/nsp2634T634IaCaaTa11AY.5.30.000337
ORF1ab/nsp2634T634IaCaaTa11AY.500.000799
ORF1ab/nsp2634T634IaCaaTa11AY.550.000917
ORF1ab/nsp2634T634delACA---11AY.60.000041
ORF1ab/nsp2634T634IaCaaTa11AY.600.000938
ORF1ab/nsp2634T634IaCaaTa11AY.670.000464
ORF1ab/nsp2634T634delACA---11AY.680.000274
ORF1ab/nsp2634T634XACaTAa11AY.690.000187
ORF1ab/nsp2634T634IaCaaTa11AY.690.000187
ORF1ab/nsp2634T634del1acAac-11AY.7.20.000559
ORF1ab/nsp2634T634IaCaaTa11AY.710.000475
ORF1ab/nsp2634T634IaCaaTa11AY.840.000437
ORF1ab/nsp2634T634IaCaaTa11AY.850.000427
ORF1ab/nsp2634T634IaCaaTa11AY.860.00083
ORF1ab/nsp2634T634IaCaaTa11AY.880.000884
ORF1ab/nsp2634T634IaCaaTa11AY.910.00073
ORF1ab/nsp2634T634delACA---11AY.98.10.000048
ORF1ab/nsp2634T634TacAacG11AY.99.20.000092
ORF1ab/nsp2634T634TacAacG11B0.000128
ORF1ab/nsp2634T634SAcaTca11B.10.000009
ORF1ab/nsp2634T634AAcaGca11B.10.000009
ORF1ab/nsp2634T634IaCaaTa11B.1.1.1360.021277
ORF1ab/nsp2634T634TacAacG11B.1.1.1410.002012
ORF1ab/nsp2634T634IaCaaTa11B.1.1.1410.002012
ORF1ab/nsp2634T634IaCaaTa11B.1.1.1520.04
ORF1ab/nsp2634T634IaCaaTa11B.1.1.1700.001247
ORF1ab/nsp2634T634TacAacC11B.1.1.2160.00089
ORF1ab/nsp2634T634IaCaaTa11B.1.1.2220.000204
ORF1ab/nsp2634T634IaCaaTa11B.1.1.2610.008621
ORF1ab/nsp2634T634IaCaaTa11B.1.1.3150.008475
ORF1ab/nsp2634T634AAcaGca11B.1.1.3180.000302
ORF1ab/nsp2634T634AAcaGca11B.1.1.3270.1
ORF1ab/nsp2634T634IaCaaTa11B.1.1.3480.000796
ORF1ab/nsp2634T634IaCaaTa11B.1.1.3500.04
ORF1ab/nsp2634T634IaCaaTa11B.1.1.3680.003086
ORF1ab/nsp2634T634IaCaaTa11B.1.1.370.000193
ORF1ab/nsp2634T634IaCaaTa11B.1.1.390.00051
ORF1ab/nsp2634T634IaCaaTa11B.1.1.3910.008547
ORF1ab/nsp2634T634TacAacT11B.1.1.4110.014706
ORF1ab/nsp2634T634delACA---11B.1.1.4160.000905
ORF1ab/nsp2634T634IaCaaTa11B.1.1.4340.000349
ORF1ab/nsp2634T634IaCaaTa11B.1.1.4480.002033
ORF1ab/nsp2634T634delACA---11B.1.1.460.004367
ORF1ab/nsp2634T634EACAGAG11B.1.1.460.004367
ORF1ab/nsp2634T634IaCaaTa11B.1.1.460.004367
ORF1ab/nsp2634T634SAcaTca11B.1.1.500.000679
ORF1ab/nsp2634T634TacAacG11B.1.1.5190.00004
ORF1ab/nsp2634T634del1Aca-ca11B.1.1.70.000001
ORF1ab/nsp2634T634RaCaaGa11B.1.1.70.000001
ORF1ab/nsp2634T634SAcaTca11B.1.1.70.000001
ORF1ab/nsp2634T634delACA---11B.1.1.700.000341
ORF1ab/nsp2634T634IaCaaTa11B.1.1.700.000341
ORF1ab/nsp2634T634IaCaaTa11B.1.110.30.000718
ORF1ab/nsp2634T634IaCaaTa11B.1.1390.000733
ORF1ab/nsp2634T634IaCaaTa11B.1.160.140.002119
ORF1ab/nsp2634T634IaCaaTa11B.1.160.160.000929
ORF1ab/nsp2634T634IaCaaTa11B.1.160.300.002976
ORF1ab/nsp2634T634IaCaaTa11B.1.177.100.000878
ORF1ab/nsp2634T634IaCaaTa11B.1.177.120.000152
ORF1ab/nsp2634T634IaCaaTa11B.1.177.200.001517
ORF1ab/nsp2634T634SAcaTca11B.1.177.210.000076
ORF1ab/nsp2634T634TacAacG11B.1.177.230.003236
ORF1ab/nsp2634T634IaCaaTa11B.1.177.230.003236
ORF1ab/nsp2634T634IaCaaTa11B.1.177.260.006993
ORF1ab/nsp2634T634IaCaaTa11B.1.177.330.001645
ORF1ab/nsp2634T634IaCaaTa11B.1.177.400.005155
ORF1ab/nsp2634T634delACA---11B.1.177.510.004566
ORF1ab/nsp2634T634IaCaaTa11B.1.177.530.002392
ORF1ab/nsp2634T634IaCaaTa11B.1.177.540.000606
ORF1ab/nsp2634T634IaCaaTa11B.1.177.570.000281
ORF1ab/nsp2634T634IaCaaTa11B.1.177.620.001192
ORF1ab/nsp2634T634IaCaaTa11B.1.177.70.000165
ORF1ab/nsp2634T634PAcaCca11B.1.177.730.000566
ORF1ab/nsp2634T634IaCaaTa11B.1.177.750.001041
ORF1ab/nsp2634T634IaCaaTa11B.1.177.770.000726
ORF1ab/nsp2634T634IaCaaTa11B.1.177.820.000477
ORF1ab/nsp2634T634IaCaaTa11B.1.177.870.000728
ORF1ab/nsp2634T634IaCaaTa11B.1.1920.009259
ORF1ab/nsp2634T634del1acAac-11B.1.20.000009
ORF1ab/nsp2634T634IaCaaTa11B.1.2060.000816
ORF1ab/nsp2634T634IaCaaTa11B.1.2130.014925
ORF1ab/nsp2634T634IaCaaTa11B.1.214.20.0006
ORF1ab/nsp2634T634IaCaaTa11B.1.214.30.007143
ORF1ab/nsp2634T634AAcaGca11B.1.2210.000071
ORF1ab/nsp2634T634IaCaaTa11B.1.2320.000537
ORF1ab/nsp2634T634TacAacG11B.1.2340.000132
ORF1ab/nsp2634T634IaCaaTa11B.1.2390.001221
ORF1ab/nsp2634T634IaCaaTa11B.1.258.160.001637
ORF1ab/nsp2634T634KaCaaAa11B.1.258.170.000104
ORF1ab/nsp2634T634IaCaaTa11B.1.258.40.003448
ORF1ab/nsp2634T634IaCaaTa11B.1.2650.001271
ORF1ab/nsp2634T634IaCaaTa11B.1.2790.000514
ORF1ab/nsp2634T634IaCaaTa11B.1.3240.001605
ORF1ab/nsp2634T634IaCaaTa11B.1.3490.000715
ORF1ab/nsp2634T634IaCaaTa11B.1.351.50.0006
ORF1ab/nsp2634T634IaCaaTa11B.1.36.160.001425
ORF1ab/nsp2634T634IaCaaTa11B.1.36.260.002857
ORF1ab/nsp2634T634IaCaaTa11B.1.36.390.002217
ORF1ab/nsp2634T634IaCaaTa11B.1.3620.001541
ORF1ab/nsp2634T634del1Aca-ca11B.1.3750.00082
ORF1ab/nsp2634T634IaCaaTa11B.1.3910.001127
ORF1ab/nsp2634T634IaCaaTa11B.1.4040.001302
ORF1ab/nsp2634T634IaCaaTa11B.1.4090.000781
ORF1ab/nsp2634T634IaCaaTa11B.1.4160.001269
ORF1ab/nsp2634T634TacAacG11B.1.4270.00005
ORF1ab/nsp2634T634AAcaGca11B.1.4270.00005
ORF1ab/nsp2634T634KaCaaAa11B.1.4290.000024
ORF1ab/nsp2634T634IaCaaTa11B.1.4700.001404
ORF1ab/nsp2634T634IaCaaTa11B.1.4740.001901
ORF1ab/nsp2634T634IaCaaTa11B.1.4760.1
ORF1ab/nsp2634T634TacAacG11B.1.4990.00105
ORF1ab/nsp2634T634IaCaaTa11B.1.5100.026316
ORF1ab/nsp2634T634TacAacG11B.1.5230.002451
ORF1ab/nsp2634T634IaCaaTa11B.1.5240.001406
ORF1ab/nsp2634T634TacAacG11B.1.5260.000024
ORF1ab/nsp2634T634IaCaaTa11B.1.5390.017544
ORF1ab/nsp2634T634IaCaaTa11B.1.5500.013699
ORF1ab/nsp2634T634IaCaaTa11B.1.5510.00129
ORF1ab/nsp2634T634delACA---11B.1.5610.000397
ORF1ab/nsp2634T634IaCaaTa11B.1.5680.001111
ORF1ab/nsp2634T634IaCaaTa11B.1.5880.00091
ORF1ab/nsp2634T634IaCaaTa11B.1.5900.004545
ORF1ab/nsp2634T634TacAacC11B.1.5960.000087
ORF1ab/nsp2634T634delACA---11B.1.617.10.000129
ORF1ab/nsp2634T634TacAacG11B.1.617.10.000129
ORF1ab/nsp2634T634NaCAaAC11B.1.617.20.000004
ORF1ab/nsp2634T634KaCaaAa11B.1.617.20.000004
ORF1ab/nsp2634T634IaCaaTa11B.1.617.30.002985
ORF1ab/nsp2634T634TacAacC11B.1.6210.000089
ORF1ab/nsp2634T634delACA---11B.1.621.10.000506
ORF1ab/nsp2634T634IaCaaTa11B.1.621.10.000506
ORF1ab/nsp2634T634TacAacG11B.1.6280.000352
ORF1ab/nsp2634T634IaCaaTa11B.1.6380.052632
ORF1ab/nsp2634T634IaCaaTa11B.290.003509
ORF1ab/nsp2634T634IaCaaTa11B.40.002208
ORF1ab/nsp2634T634delACA---11B.570.015152
ORF1ab/nsp2634T634TacAacG11B.60.00091
ORF1ab/nsp2634T634AAcaGca11B.60.00091
ORF1ab/nsp2634T634IaCaaTa11C.20.016129
ORF1ab/nsp2634T634IaCaaTa11C.230.005814
ORF1ab/nsp2634T634IaCaaTa11C.270.018519
ORF1ab/nsp2634T634SAcaTca11C.360.000911
ORF1ab/nsp2634T634IaCaaTa11C.36.30.000567
ORF1ab/nsp2634T634IaCaaTa11C.37.10.002618
ORF1ab/nsp2634T634PAcaCca11D.20.000075
ORF1ab/nsp2634T634IaCaaTa11N.50.001767
ORF1ab/nsp2634T634IaCaaTa11P.1.120.000484
ORF1ab/nsp2634T634delACA---11P.1.150.000232
ORF1ab/nsp2634T634TacAacG11P.1.40.000977
ORF1ab/nsp2634T634delACA---11Q.80.000165
ORF1ab/nsp2634T634AAcaGca11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.