CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 631 & Codon = aaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2631N631NN811NsynaaTaaC9808980812696-2698

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2631N631NaaTaaC98089808All0.001876
ORF1ab/nsp2631N631NaaTaaC31183118B.1.1.70.002791
ORF1ab/nsp2631N631NaaTaaC29842984AY.700.622185
ORF1ab/nsp2631N631NaaTaaC976976B.1.20.008594
ORF1ab/nsp2631N631NaaTaaC373373B.1.1770.004912
ORF1ab/nsp2631N631NaaTaaC253253AY.4.50.027196
ORF1ab/nsp2631N631NaaTaaC214214B.1.1.3850.955357
ORF1ab/nsp2631N631NaaTaaC193193AY.440.001175
ORF1ab/nsp2631N631NaaTaaC146146B.1.617.20.00055
ORF1ab/nsp2631N631NaaTaaC130130AY.40.000202
ORF1ab/nsp2631N631NaaTaaC119119B.10.00109
ORF1ab/nsp2631N631NaaTaaC118118AY.130.018995
ORF1ab/nsp2631N631NaaTaaC106106B.1.1.2280.323171
ORF1ab/nsp2631N631NaaTaaC102102AY.430.000452
ORF1ab/nsp2631N631NaaTaaC9595P.1.140.004541
ORF1ab/nsp2631N631NaaTaaC6868B.1.1.1290.623853
ORF1ab/nsp2631N631NaaTaaC4646AY.250.000277
ORF1ab/nsp2631N631NaaTaaC4141AY.50.000847
ORF1ab/nsp2631N631NaaTaaC4040AY.1030.000248
ORF1ab/nsp2631N631NaaTaaC3838AY.30.000378
ORF1ab/nsp2631N631NaaTaaC3636B.1.6310.121212
ORF1ab/nsp2631N631NaaTaaC3535B.1.6090.016779
ORF1ab/nsp2631N631NaaTaaC3131B.1.2580.002063
ORF1ab/nsp2631N631NaaTaaC3030B.1.1.2840.003222
ORF1ab/nsp2631N631NaaTaaC2727B.1.10.00049
ORF1ab/nsp2631N631NaaTaaC2727B.1.5960.002353
ORF1ab/nsp2631N631NaaTaaC2424B.1.4270.001212
ORF1ab/nsp2631N631NaaTaaC2222AY.290.000347
ORF1ab/nsp2631N631NaaTaaC2121AY.390.000519
ORF1ab/nsp2631N631NaaTaaC2020B.1.3490.014296
ORF1ab/nsp2631N631NaaTaaC1919AY.1020.000504
ORF1ab/nsp2631N631NaaTaaC1919B.1.5260.000447
ORF1ab/nsp2631N631NaaTaaC1818P.10.000284
ORF1ab/nsp2631N631NaaTaaC1212AY.1170.001014
ORF1ab/nsp2631N631NaaTaaC1010B.1.1.2140.000555
ORF1ab/nsp2631N631NaaTaaC99B.1.3510.000268
ORF1ab/nsp2631N631NaaTaaC88AY.1000.000368
ORF1ab/nsp2631N631NaaTaaC88AY.46.60.000578
ORF1ab/nsp2631N631NaaTaaC88AY.98.10.000387
ORF1ab/nsp2631N631NaaTaaC88B.1.177.210.000612
ORF1ab/nsp2631N631NaaTaaC88B.1.438.10.000858
ORF1ab/nsp2631N631NaaTaaC88B.1.466.20.00313
ORF1ab/nsp2631N631NaaTaaC77AY.260.000198
ORF1ab/nsp2631N631NaaTaaC77AY.39.10.000277
ORF1ab/nsp2631N631NaaTaaC66AY.230.000418
ORF1ab/nsp2631N631NaaTaaC66AY.4.20.00013
ORF1ab/nsp2631N631NaaTaaC66AY.46.10.00616
ORF1ab/nsp2631N631NaaTaaC66B.1.1.2200.011152
ORF1ab/nsp2631N631NaaTaaC55AY.470.000156
ORF1ab/nsp2631N631NaaTaaC55AY.610.000524
ORF1ab/nsp2631N631NaaTaaC55AY.9.20.000184
ORF1ab/nsp2631N631NaaTaaC55B.1.1.5190.000199
ORF1ab/nsp2631N631NaaTaaC55B.1.177.100.00439
ORF1ab/nsp2631N631NaaTaaC55C.370.00058
ORF1ab/nsp2631N631NaaTaaC55N.50.008834
ORF1ab/nsp2631N631NaaTaaC44AY.330.000267
ORF1ab/nsp2631N631NaaTaaC44AY.730.002661
ORF1ab/nsp2631N631NaaTaaC44AY.750.000224
ORF1ab/nsp2631N631NaaTaaC44B.1.1600.000125
ORF1ab/nsp2631N631NaaTaaC44B.1.351.20.00121
ORF1ab/nsp2631N631NaaTaaC33AY.200.000117
ORF1ab/nsp2631N631NaaTaaC33AY.450.000365
ORF1ab/nsp2631N631NaaTaaC33AY.460.000312
ORF1ab/nsp2631N631NaaTaaC33AY.710.001425
ORF1ab/nsp2631N631NaaTaaC33B.1.2430.000209
ORF1ab/nsp2631N631NaaTaaC33B.1.36.380.004926
ORF1ab/nsp2631N631NaaTaaC33B.1.4260.003027
ORF1ab/nsp2631N631NaaTaaC33C.360.002732
ORF1ab/nsp2631N631NaaTaaC33D.20.000225
ORF1ab/nsp2631N631NaaTaaC33P.1.70.000958
ORF1ab/nsp2631N631NaaTaaC22AY.1140.000462
ORF1ab/nsp2631N631NaaTaaC22AY.120.20.002571
ORF1ab/nsp2631N631NaaTaaC22AY.120.2.10.000997
ORF1ab/nsp2631N631NaaTaaC22AY.1210.000271
ORF1ab/nsp2631N631NaaTaaC22AY.530.000575
ORF1ab/nsp2631N631NaaTaaC22AY.540.000191
ORF1ab/nsp2631N631NaaTaaC22AY.60.000082
ORF1ab/nsp2631N631NaaTaaC22AY.840.000875
ORF1ab/nsp2631N631NaaTaaC22AY.99.20.000184
ORF1ab/nsp2631N631NaaTaaC22B0.000256
ORF1ab/nsp2631N631NaaTaaC22B.1.1.2220.000408
ORF1ab/nsp2631N631NaaTaaC22B.1.1.3170.000823
ORF1ab/nsp2631N631NaaTaaC22B.1.1.4030.051282
ORF1ab/nsp2631N631NaaTaaC22B.1.160.290.008439
ORF1ab/nsp2631N631NaaTaaC22B.1.1610.034483
ORF1ab/nsp2631N631NaaTaaC22B.1.177.730.001133
ORF1ab/nsp2631N631NaaTaaC22B.1.2210.000142
ORF1ab/nsp2631N631NaaTaaC22B.1.2340.000264
ORF1ab/nsp2631N631NaaTaaC22B.1.4290.000047
ORF1ab/nsp2631N631NaaTaaC22B.1.6280.000705
ORF1ab/nsp2631N631NaaTaaC22P.1.100.000539
ORF1ab/nsp2631N631NaaTaaC22P.1.120.000968
ORF1ab/nsp2631N631NaaTaaC22Q.80.00033
ORF1ab/nsp2631N631NaaTaaC22R.10.00018
ORF1ab/nsp2631N631NaaTaaC11AY.1070.000466
ORF1ab/nsp2631N631NaaTaaC11AY.1080.001103
ORF1ab/nsp2631N631NaaTaaC11AY.1110.000183
ORF1ab/nsp2631N631NaaTaaC11AY.1190.000035
ORF1ab/nsp2631N631NaaTaaC11AY.1200.000037
ORF1ab/nsp2631N631NaaTaaC11AY.240.000431
ORF1ab/nsp2631N631NaaTaaC11AY.29.10.000221
ORF1ab/nsp2631N631NaaTaaC11AY.320.000532
ORF1ab/nsp2631N631NaaTaaC11AY.340.000097
ORF1ab/nsp2631N631NaaTaaC11AY.350.000233
ORF1ab/nsp2631N631NaaTaaC11AY.360.000148
ORF1ab/nsp2631N631NaaTaaC11AY.400.000964
ORF1ab/nsp2631N631NaaTaaC11AY.410.000294
ORF1ab/nsp2631N631NaaTaaC11AY.46.20.000635
ORF1ab/nsp2631N631NaaTaaC11AY.520.000814
ORF1ab/nsp2631N631NaaTaaC11AY.640.000595
ORF1ab/nsp2631N631NaaTaaC11AY.70.000196
ORF1ab/nsp2631N631NaaTaaC11AY.7.10.000113
ORF1ab/nsp2631N631NaaTaaC11AY.75.10.00018
ORF1ab/nsp2631N631NaaTaaC11AY.850.000427
ORF1ab/nsp2631N631NaaTaaC11AY.880.000884
ORF1ab/nsp2631N631NaaTaaC11AY.9.10.000084
ORF1ab/nsp2631N631NaaTaaC11AY.950.000761
ORF1ab/nsp2631N631NaaTaaC11AY.980.000079
ORF1ab/nsp2631N631NaaTaaC11AZ.2.10.00813
ORF1ab/nsp2631N631NaaTaaC11B.1.1.100.001115
ORF1ab/nsp2631N631NaaTaaC11B.1.1.1590.004673
ORF1ab/nsp2631N631NaaTaaC11B.1.1.1700.001247
ORF1ab/nsp2631N631NaaTaaC11B.1.1.2160.00089
ORF1ab/nsp2631N631NaaTaaC11B.1.1.2270.004348
ORF1ab/nsp2631N631NaaTaaC11B.1.1.2370.005405
ORF1ab/nsp2631N631NaaTaaC11B.1.1.2850.006536
ORF1ab/nsp2631N631NaaTaaC11B.1.1.3050.003861
ORF1ab/nsp2631N631NaaTaaC11B.1.1.3080.011765
ORF1ab/nsp2631N631NaaTaaC11B.1.1.3490.010309
ORF1ab/nsp2631N631NaaTaaC11B.1.1.3560.008547
ORF1ab/nsp2631N631NaaTaaC11B.1.1.4090.002833
ORF1ab/nsp2631N631NaaTaaC11B.1.1.4640.001473
ORF1ab/nsp2631N631NaaTaaC11B.1.1.4850.016667
ORF1ab/nsp2631N631NaaTaaC11B.1.1390.000733
ORF1ab/nsp2631N631NaaTaaC11B.1.177.20.004545
ORF1ab/nsp2631N631NaaTaaC11B.1.177.600.000218
ORF1ab/nsp2631N631NaaTaaC11B.1.177.750.001041
ORF1ab/nsp2631N631NaaTaaC11B.1.220.001318
ORF1ab/nsp2631N631NaaTaaC11B.1.221.10.002907
ORF1ab/nsp2631N631NaaTaaC11B.1.2400.000216
ORF1ab/nsp2631N631NaaTaaC11B.1.2410.000812
ORF1ab/nsp2631N631NaaTaaC11B.1.258.70.001912
ORF1ab/nsp2631N631NaaTaaC11B.1.2980.002114
ORF1ab/nsp2631N631NaaTaaC11B.1.3110.000275
ORF1ab/nsp2631N631NaaTaaC11B.1.3200.001245
ORF1ab/nsp2631N631NaaTaaC11B.1.36.10.00114
ORF1ab/nsp2631N631NaaTaaC11B.1.36.290.000517
ORF1ab/nsp2631N631NaaTaaC11B.1.3750.00082
ORF1ab/nsp2631N631NaaTaaC11B.1.4150.014286
ORF1ab/nsp2631N631NaaTaaC11B.1.4680.005714
ORF1ab/nsp2631N631NaaTaaC11B.1.5510.00129
ORF1ab/nsp2631N631NaaTaaC11B.1.5610.000397
ORF1ab/nsp2631N631NaaTaaC11B.1.5750.000303
ORF1ab/nsp2631N631NaaTaaC11B.1.5950.000261
ORF1ab/nsp2631N631NaaTaaC11B.1.617.10.000129
ORF1ab/nsp2631N631NaaTaaC11B.1.6210.000089
ORF1ab/nsp2631N631NaaTaaC11B.1.6230.000536
ORF1ab/nsp2631N631NaaTaaC11B.1.6370.000073
ORF1ab/nsp2631N631NaaTaaC11B.400.000364
ORF1ab/nsp2631N631NaaTaaC11P.1.150.000232
ORF1ab/nsp2631N631NaaTaaC11P.1.170.000162
ORF1ab/nsp2631N631NaaTaaC11P.1.40.000977
ORF1ab/nsp2631N631NaaTaaC11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.