CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 631 | N631N | N811N | syn | aaT | aaC | 9808 | 9808 | 1 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631K | N811K | nonsyn | aaT | aaA | 716 | 705 | 0.984637 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631K | N811K | nonsyn | aaT | aaG | 716 | 11 | 0.0153631 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631T | N811T | nonsyn | aAt | aCt | 126 | 126 | 1 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631del1 | N811del1 | del | aaT | aa- | 82 | 79 | 0.963415 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631del1 | N811del1 | del | Aat | -at | 82 | 3 | 0.0365854 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631del | N811del | del | AAT | --- | 73 | 73 | 1 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631S | N811S | nonsyn | aAt | aGt | 43 | 41 | 0.953488 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631S | N811S | nonsyn | aAT | aGC | 43 | 1 | 0.0232558 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631S | N811S | nonsyn | AAT | TCG | 43 | 1 | 0.0232558 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631Y | N811Y | nonsyn | Aat | Tat | 19 | 19 | 1 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631I | N811I | nonsyn | aAt | aTt | 12 | 12 | 1 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631D | N811D | nonsyn | Aat | Gat | 5 | 5 | 1 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631H | N811H | nonsyn | Aat | Cat | 3 | 3 | 1 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631del2 | N811del2 | del | aAT | a-- | 2 | 1 | 0.5 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631del2 | N811del2 | del | AAt | --t | 2 | 1 | 0.5 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631P | N811P | nonsyn | AAt | CCt | 1 | 1 | 1 | 2696-2698 |
ORF1ab/nsp2 | 631 | N631V | N811V | nonsyn | AAT | GTG | 1 | 1 | 1 | 2696-2698 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 9808 | 9808 | All | 0.001876 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 3118 | 3118 | B.1.1.7 | 0.002791 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2984 | 2984 | AY.70 | 0.622185 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 976 | 976 | B.1.2 | 0.008594 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 705 | 716 | All | 0.000135 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaG | 11 | 716 | All | 0.000002 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 525 | 525 | AY.4 | 0.000817 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 373 | 373 | B.1.177 | 0.004912 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 253 | 253 | AY.4.5 | 0.027196 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 214 | 214 | B.1.1.385 | 0.955357 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 193 | 193 | AY.44 | 0.001175 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 146 | 146 | B.1.617.2 | 0.00055 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 130 | 130 | AY.4 | 0.000202 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 126 | 126 | All | 0.000024 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 119 | 119 | B.1 | 0.00109 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 118 | 118 | AY.13 | 0.018995 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 106 | 106 | B.1.1.228 | 0.323171 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 102 | 102 | AY.43 | 0.000452 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 95 | 95 | P.1.14 | 0.004541 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 88 | 88 | B.1.377 | 0.401826 |
ORF1ab/nsp2 | 631 | N631del1 | aaT | aa- | 79 | 82 | All | 0.000015 |
ORF1ab/nsp2 | 631 | N631del1 | Aat | -at | 3 | 82 | All | 0.000001 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 73 | 73 | All | 0.000014 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 68 | 68 | B.1.1.129 | 0.623853 |
ORF1ab/nsp2 | 631 | N631del1 | aaT | aa- | 66 | 66 | B.1.1.7 | 0.000059 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 46 | 46 | AY.25 | 0.000277 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 41 | 43 | All | 0.000008 |
ORF1ab/nsp2 | 631 | N631S | aAT | aGC | 1 | 43 | All | 0 |
ORF1ab/nsp2 | 631 | N631S | AAT | TCG | 1 | 43 | All | 0 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 41 | 41 | AY.5 | 0.000847 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 40 | 40 | AY.103 | 0.000248 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 38 | 38 | AY.3 | 0.000378 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 36 | 36 | B.1.631 | 0.121212 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 35 | 35 | B.1.609 | 0.016779 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 31 | 31 | B.1.258 | 0.002063 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 30 | 30 | B.1.1.284 | 0.003222 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 27 | 27 | B.1.1 | 0.00049 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 27 | 27 | B.1.596 | 0.002353 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 24 | 24 | AY.4.5 | 0.00258 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 24 | 24 | B.1.427 | 0.001212 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 22 | 22 | AY.29 | 0.000347 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 21 | 21 | AY.39 | 0.000519 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 20 | 20 | B.1.349 | 0.014296 |
ORF1ab/nsp2 | 631 | N631Y | Aat | Tat | 19 | 19 | All | 0.000004 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 19 | 19 | AY.102 | 0.000504 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 19 | 19 | B.1.526 | 0.000447 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 16 | 17 | AY.43 | 0.000071 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaG | 1 | 17 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 16 | 16 | AY.4.2 | 0.000347 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 14 | 14 | AY.98 | 0.001106 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 13 | 13 | AY.111 | 0.002381 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp2 | 631 | N631I | aAt | aTt | 12 | 12 | All | 0.000002 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 8 | 8 | B.1.177.21 | 0.000612 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 8 | 8 | B.1.438.1 | 0.000858 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 8 | 8 | B.1.466.2 | 0.00313 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 6 | 6 | AY.46.1 | 0.00616 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 6 | 6 | AY.46.5 | 0.00119 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 6 | 6 | B.1.1.220 | 0.011152 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp2 | 631 | N631Y | Aat | Tat | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp2 | 631 | N631D | Aat | Gat | 5 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 631 | N631Y | Aat | Tat | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 4 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 631 | N631S | AAT | TCG | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 5 | 5 | B.1.177.10 | 0.00439 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 4 | 5 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 631 | N631S | aAT | aGC | 1 | 5 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 5 | 5 | N.5 | 0.008834 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 4 | 4 | AY.73 | 0.002661 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp2 | 631 | N631H | Aat | Cat | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 631 | N631del1 | aaT | aa- | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp2 | 631 | N631del1 | aaT | aa- | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 3 | 3 | B.1.36.38 | 0.004926 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 3 | 3 | B.1.426 | 0.003027 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 631 | N631I | aAt | aTt | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp2 | 631 | N631del2 | AAt | --t | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 631 | N631del2 | aAT | a-- | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 631 | N631del1 | aaT | aa- | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | B | 0.000256 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 631 | N631del1 | Aat | -at | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | B.1.1.403 | 0.051282 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp2 | 631 | N631Y | Aat | Tat | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 631 | N631del1 | aaT | aa- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | B.1.160.29 | 0.008439 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | B.1.161 | 0.034483 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp2 | 631 | N631D | Aat | Gat | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp2 | 631 | N631P | AAt | CCt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 631 | N631V | AAT | GTG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 631 | N631H | Aat | Cat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 631 | N631Y | Aat | Tat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 631 | N631I | aAt | aTt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 631 | N631del2 | aAT | a-- | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 631 | N631H | Aat | Cat | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 631 | N631Y | Aat | Tat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 631 | N631I | aAt | aTt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 631 | N631Y | Aat | Tat | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 631 | N631D | Aat | Gat | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 631 | N631I | aAt | aTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 631 | N631del2 | AAt | --t | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | AZ.2.1 | 0.00813 |
ORF1ab/nsp2 | 631 | N631D | Aat | Gat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 631 | N631Y | Aat | Tat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.308 | 0.011765 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaG | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 631 | N631I | aAt | aTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 631 | N631I | aAt | aTt | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp2 | 631 | N631I | aAt | aTt | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaG | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaG | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp2 | 631 | N631I | aAt | aTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaG | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 631 | N631del1 | aaT | aa- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 631 | N631Y | Aat | Tat | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 631 | N631del1 | Aat | -at | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaG | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp2 | 631 | N631V | AAT | GTG | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp2 | 631 | N631Y | Aat | Tat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp2 | 631 | N631del1 | aaT | aa- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 631 | N631K | aaT | aaA | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp2 | 631 | N631T | aAt | aCt | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp2 | 631 | N631P | AAt | CCt | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp2 | 631 | N631H | Aat | Cat | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 631 | N631D | Aat | Gat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 631 | N631I | aAt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 631 | N631I | aAt | aTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 631 | N631S | aAt | aGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp2 | 631 | N631N | aaT | aaC | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 631 | N631del | AAT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 631 | N631del1 | aaT | aa- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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