CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 63

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp263E63EE243EsyngaAgaG9389381992-994
ORF1ab/nsp263E63KE243KnonsynGaaAaa1661661992-994
ORF1ab/nsp263E63GE243GnonsyngAagGa80801992-994
ORF1ab/nsp263E63AE243AnonsyngAagCa55551992-994
ORF1ab/nsp263E63DE243DnonsyngaAgaC29240.827586992-994
ORF1ab/nsp263E63DE243DnonsyngaAgaT2950.172414992-994
ORF1ab/nsp263E63delE243deldelGAA---27271992-994
ORF1ab/nsp263E63VE243VnonsyngAagTa10101992-994
ORF1ab/nsp263E63QE243QnonsynGaaCaa331992-994
ORF1ab/nsp263E63XE243XnonsynGaaTaa331992-994

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp263E63EgaAgaG938938All0.000179
ORF1ab/nsp263E63EgaAgaG481481B.1.6270.971717
ORF1ab/nsp263E63EgaAgaG292292B.1.6310.983165
ORF1ab/nsp263E63KGaaAaa166166All0.000032
ORF1ab/nsp263E63GgAagGa8080All0.000015
ORF1ab/nsp263E63KGaaAaa6161B.1.1.70.000055
ORF1ab/nsp263E63EgaAgaG5757B.1.1.70.000051
ORF1ab/nsp263E63AgAagCa5555All0.000011
ORF1ab/nsp263E63DgaAgaC2429All0.000005
ORF1ab/nsp263E63DgaAgaT529All0.000001
ORF1ab/nsp263E63delGAA---2727All0.000005
ORF1ab/nsp263E63GgAagGa2222B.1.1.70.00002
ORF1ab/nsp263E63KGaaAaa2020AY.40.000031
ORF1ab/nsp263E63GgAagGa1919AY.250.000114
ORF1ab/nsp263E63AgAagCa1515B.1.617.20.000056
ORF1ab/nsp263E63EgaAgaG1414B.10.000128
ORF1ab/nsp263E63AgAagCa1111B.1.1.70.00001
ORF1ab/nsp263E63VgAagTa1010All0.000002
ORF1ab/nsp263E63EgaAgaG1010B.1.1.370.001929
ORF1ab/nsp263E63DgaAgaC1010B.1.20.000088
ORF1ab/nsp263E63KGaaAaa1010B.1.20.000088
ORF1ab/nsp263E63EgaAgaG99B.1.20.000079
ORF1ab/nsp263E63EgaAgaG99B.1.617.20.000034
ORF1ab/nsp263E63KGaaAaa99B.1.617.20.000034
ORF1ab/nsp263E63KGaaAaa77AY.290.00011
ORF1ab/nsp263E63KGaaAaa77B.1.10.000127
ORF1ab/nsp263E63EgaAgaG66AY.250.000036
ORF1ab/nsp263E63EgaAgaG66B0.000767
ORF1ab/nsp263E63EgaAgaG55AY.430.000022
ORF1ab/nsp263E63delGAA---55B.1.1.330.002104
ORF1ab/nsp263E63delGAA---55B.1.1.70.000004
ORF1ab/nsp263E63GgAagGa55P.10.000079
ORF1ab/nsp263E63KGaaAaa55Q.10.000632
ORF1ab/nsp263E63DgaAgaT34AY.250.000018
ORF1ab/nsp263E63DgaAgaC14AY.250.000006
ORF1ab/nsp263E63KGaaAaa44AY.440.000024
ORF1ab/nsp263E63EgaAgaG44B.1.1.2530.010025
ORF1ab/nsp263E63delGAA---44B.1.1.3480.003185
ORF1ab/nsp263E63KGaaAaa33A.23.10.002113
ORF1ab/nsp263E63QGaaCaa33All0.000001
ORF1ab/nsp263E63XGaaTaa33All0.000001
ORF1ab/nsp263E63KGaaAaa33AY.250.000018
ORF1ab/nsp263E63AgAagCa33AY.290.000047
ORF1ab/nsp263E63KGaaAaa33AY.30.00003
ORF1ab/nsp263E63EgaAgaG33AY.390.000074
ORF1ab/nsp263E63EgaAgaG33AY.40.000005
ORF1ab/nsp263E63GgAagGa33AY.40.000005
ORF1ab/nsp263E63GgAagGa33AY.440.000018
ORF1ab/nsp263E63EgaAgaG33B.1.4290.000071
ORF1ab/nsp263E63EgaAgaG22A.2.50.000998
ORF1ab/nsp263E63GgAagGa22AY.1030.000012
ORF1ab/nsp263E63GgAagGa22AY.120.10.000642
ORF1ab/nsp263E63AgAagCa22AY.250.000012
ORF1ab/nsp263E63EgaAgaG22AY.30.00002
ORF1ab/nsp263E63DgaAgaC22AY.3.10.000171
ORF1ab/nsp263E63AgAagCa22AY.40.000003
ORF1ab/nsp263E63DgaAgaC22AY.40.000003
ORF1ab/nsp263E63GgAagGa22AY.4.20.000043
ORF1ab/nsp263E63AgAagCa22AY.70.000392
ORF1ab/nsp263E63DgaAgaC22AY.780.003082
ORF1ab/nsp263E63XGaaTaa22B.10.000018
ORF1ab/nsp263E63EgaAgaG22B.1.1.5190.000079
ORF1ab/nsp263E63GgAagGa22B.1.1.5190.000079
ORF1ab/nsp263E63DgaAgaC22B.1.1.70.000002
ORF1ab/nsp263E63KGaaAaa22B.1.2210.000142
ORF1ab/nsp263E63KGaaAaa22B.1.2430.000139
ORF1ab/nsp263E63AgAagCa22B.1.258.140.001961
ORF1ab/nsp263E63EgaAgaG22B.1.3510.000059
ORF1ab/nsp263E63EgaAgaG22B.1.4000.000858
ORF1ab/nsp263E63KGaaAaa22B.1.5260.000047
ORF1ab/nsp263E63VgAagTa22B.1.617.20.000008
ORF1ab/nsp263E63GgAagGa22B.1.617.20.000008
ORF1ab/nsp263E63DgaAgaC12B.1.617.20.000004
ORF1ab/nsp263E63DgaAgaT12B.1.617.20.000004
ORF1ab/nsp263E63AgAagCa22B.1.6210.000177
ORF1ab/nsp263E63delGAA---22N.40.008511
ORF1ab/nsp263E63delGAA---22N.60.014184
ORF1ab/nsp263E63delGAA---22P.20.000373
ORF1ab/nsp263E63GgAagGa110.055556
ORF1ab/nsp263E63GgAagGa11A.23.10.000704
ORF1ab/nsp263E63KGaaAaa11AD.20.000219
ORF1ab/nsp263E63EgaAgaG11AU.30.00211
ORF1ab/nsp263E63EgaAgaG11AY.1000.000046
ORF1ab/nsp263E63KGaaAaa11AY.1020.000027
ORF1ab/nsp263E63KGaaAaa11AY.1030.000006
ORF1ab/nsp263E63AgAagCa11AY.1030.000006
ORF1ab/nsp263E63EgaAgaG11AY.1030.000006
ORF1ab/nsp263E63delGAA---11AY.1110.000183
ORF1ab/nsp263E63GgAagGa11AY.1180.000063
ORF1ab/nsp263E63KGaaAaa11AY.120.000316
ORF1ab/nsp263E63VgAagTa11AY.200.000039
ORF1ab/nsp263E63EgaAgaG11AY.230.00007
ORF1ab/nsp263E63KGaaAaa11AY.230.00007
ORF1ab/nsp263E63VgAagTa11AY.250.000006
ORF1ab/nsp263E63GgAagGa11AY.260.000028
ORF1ab/nsp263E63EgaAgaG11AY.270.000065
ORF1ab/nsp263E63GgAagGa11AY.30.00001
ORF1ab/nsp263E63AgAagCa11AY.360.000148
ORF1ab/nsp263E63AgAagCa11AY.390.000025
ORF1ab/nsp263E63KGaaAaa11AY.390.000025
ORF1ab/nsp263E63GgAagGa11AY.390.000025
ORF1ab/nsp263E63EgaAgaG11AY.39.10.00004
ORF1ab/nsp263E63AgAagCa11AY.39.10.00004
ORF1ab/nsp263E63delGAA---11AY.40.000002
ORF1ab/nsp263E63QGaaCaa11AY.40.000002
ORF1ab/nsp263E63EgaAgaG11AY.4.50.000107
ORF1ab/nsp263E63GgAagGa11AY.420.00004
ORF1ab/nsp263E63DgaAgaC11AY.420.00004
ORF1ab/nsp263E63KGaaAaa11AY.420.00004
ORF1ab/nsp263E63VgAagTa11AY.430.000004
ORF1ab/nsp263E63KGaaAaa11AY.430.000004
ORF1ab/nsp263E63EgaAgaG11AY.440.000006
ORF1ab/nsp263E63AgAagCa11AY.440.000006
ORF1ab/nsp263E63KGaaAaa11AY.460.000104
ORF1ab/nsp263E63EgaAgaG11AY.460.000104
ORF1ab/nsp263E63AgAagCa11AY.470.000031
ORF1ab/nsp263E63GgAagGa11AY.50.000021
ORF1ab/nsp263E63KGaaAaa11AY.50.000021
ORF1ab/nsp263E63AgAagCa11AY.610.000105
ORF1ab/nsp263E63EgaAgaG11AY.610.000105
ORF1ab/nsp263E63DgaAgaC11AY.610.000105
ORF1ab/nsp263E63DgaAgaC11AY.650.000533
ORF1ab/nsp263E63AgAagCa11AY.670.000464
ORF1ab/nsp263E63KGaaAaa11AY.7.10.000113
ORF1ab/nsp263E63VgAagTa11AY.710.000475
ORF1ab/nsp263E63AgAagCa11AY.800.001129
ORF1ab/nsp263E63AgAagCa11AY.850.000427
ORF1ab/nsp263E63KGaaAaa11AY.90.000068
ORF1ab/nsp263E63GgAagGa11AY.90.000068
ORF1ab/nsp263E63EgaAgaG11AY.910.00073
ORF1ab/nsp263E63GgAagGa11AY.980.000079
ORF1ab/nsp263E63AgAagCa11B.10.000009
ORF1ab/nsp263E63KGaaAaa11B.10.000009
ORF1ab/nsp263E63DgaAgaT11B.10.000009
ORF1ab/nsp263E63GgAagGa11B.1.10.000018
ORF1ab/nsp263E63EgaAgaG11B.1.10.000018
ORF1ab/nsp263E63AgAagCa11B.1.10.000018
ORF1ab/nsp263E63EgaAgaG11B.1.1.10.000327
ORF1ab/nsp263E63EgaAgaG11B.1.1.1530.001095
ORF1ab/nsp263E63KGaaAaa11B.1.1.1980.001468
ORF1ab/nsp263E63KGaaAaa11B.1.1.2910.000742
ORF1ab/nsp263E63EgaAgaG11B.1.1.3110.000358
ORF1ab/nsp263E63GgAagGa11B.1.1.3690.000446
ORF1ab/nsp263E63VgAagTa11B.1.1.70.000001
ORF1ab/nsp263E63KGaaAaa11B.1.1600.000031
ORF1ab/nsp263E63GgAagGa11B.1.1600.000031
ORF1ab/nsp263E63EgaAgaG11B.1.1600.000031
ORF1ab/nsp263E63VgAagTa11B.1.1770.000013
ORF1ab/nsp263E63AgAagCa11B.1.1770.000013
ORF1ab/nsp263E63KGaaAaa11B.1.1770.000013
ORF1ab/nsp263E63AgAagCa11B.1.177.230.003236
ORF1ab/nsp263E63KGaaAaa11B.1.177.280.007407
ORF1ab/nsp263E63EgaAgaG11B.1.177.440.000519
ORF1ab/nsp263E63EgaAgaG11B.1.177.600.000218
ORF1ab/nsp263E63EgaAgaG11B.1.177.730.000566
ORF1ab/nsp263E63KGaaAaa11B.1.177.810.000189
ORF1ab/nsp263E63QGaaCaa11B.1.20.000009
ORF1ab/nsp263E63VgAagTa11B.1.20.000009
ORF1ab/nsp263E63EgaAgaG11B.1.2340.000132
ORF1ab/nsp263E63DgaAgaC11B.1.2400.000216
ORF1ab/nsp263E63GgAagGa11B.1.2400.000216
ORF1ab/nsp263E63GgAagGa11B.1.2410.000812
ORF1ab/nsp263E63KGaaAaa11B.1.258.140.00098
ORF1ab/nsp263E63EgaAgaG11B.1.258.170.000104
ORF1ab/nsp263E63XGaaTaa11B.1.351.20.000303
ORF1ab/nsp263E63KGaaAaa11B.1.36.290.000517
ORF1ab/nsp263E63EgaAgaG11B.1.4270.00005
ORF1ab/nsp263E63AgAagCa11B.1.4290.000024
ORF1ab/nsp263E63KGaaAaa11B.1.4290.000024
ORF1ab/nsp263E63delGAA---11B.1.4290.000024
ORF1ab/nsp263E63KGaaAaa11B.1.466.20.000391
ORF1ab/nsp263E63VgAagTa11B.1.5950.000261
ORF1ab/nsp263E63KGaaAaa11B.1.5960.000087
ORF1ab/nsp263E63delGAA---11B.1.617.20.000004
ORF1ab/nsp263E63delGAA---11B.1.617.30.002985
ORF1ab/nsp263E63EgaAgaG11B.1.6280.000352
ORF1ab/nsp263E63EgaAgaG11B.1.6340.003425
ORF1ab/nsp263E63EgaAgaG11B.30.000831
ORF1ab/nsp263E63delGAA---11B.340.013699
ORF1ab/nsp263E63delGAA---11C.350.000774
ORF1ab/nsp263E63KGaaAaa11N.30.005814
ORF1ab/nsp263E63KGaaAaa11P.10.000016
ORF1ab/nsp263E63GgAagGa11P.1.140.000048
ORF1ab/nsp263E63KGaaAaa11P.1.70.000319
ORF1ab/nsp263E63GgAagGa11Q.10.000126
ORF1ab/nsp263E63EgaAgaG11Q.10.000126
ORF1ab/nsp263E63KGaaAaa11Q.80.000165
ORF1ab/nsp263E63AgAagCa11Q.80.000165
ORF1ab/nsp263E63GgAagGa11R.10.00009
ORF1ab/nsp263E63QGaaCaa11Z.10.00289