CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 629 & Codon = acT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2629T629TT809TsynacAacT27041269310.9959322690-2692

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2629T629TacAacT2693127041All0.005151
ORF1ab/nsp2629T629TacAacT2044020440B.1.3510.60761
ORF1ab/nsp2629T629TacAacT32453245B.1.351.20.981846
ORF1ab/nsp2629T629TacAacT16491652B.1.351.50.988609
ORF1ab/nsp2629T629TacAacT11071107B.1.351.30.970202
ORF1ab/nsp2629T629TacAacT227230B.10.002079
ORF1ab/nsp2629T629TacAacT3333B.1.1700.142241
ORF1ab/nsp2629T629TacAacT1729B.1.1.70.000015
ORF1ab/nsp2629T629TacAacT2425B.1.10.000435
ORF1ab/nsp2629T629TacAacT2024AY.1030.000124
ORF1ab/nsp2629T629TacAacT1415B0.001789
ORF1ab/nsp2629T629TacAacT113AY.30.00001
ORF1ab/nsp2629T629TacAacT1313B.1.351.10.5
ORF1ab/nsp2629T629TacAacT1313B.1.6200.012299
ORF1ab/nsp2629T629TacAacT1212B.1.1.3750.142857
ORF1ab/nsp2629T629TacAacT310AY.40.000005
ORF1ab/nsp2629T629TacAacT1010B.1.4700.014045
ORF1ab/nsp2629T629TacAacT1010B.1.5240.014065
ORF1ab/nsp2629T629TacAacT77B.1.1600.000218
ORF1ab/nsp2629T629TacAacT67B.1.617.20.000023
ORF1ab/nsp2629T629TacAacT66B.1.5540.026432
ORF1ab/nsp2629T629TacAacT15AY.4.20.000022
ORF1ab/nsp2629T629TacAacT55B.1.1.3060.002192
ORF1ab/nsp2629T629TacAacT44AY.440.000024
ORF1ab/nsp2629T629TacAacT44B.1.1.5070.034783
ORF1ab/nsp2629T629TacAacT44B.1.177.730.002265
ORF1ab/nsp2629T629TacAacT44B.1.5250.000453
ORF1ab/nsp2629T629TacAacT33AY.430.000013
ORF1ab/nsp2629T629TacAacT33B.1.6090.001438
ORF1ab/nsp2629T629TacAacT33B.1.6360.020134
ORF1ab/nsp2629T629TacAacT22A0.000774
ORF1ab/nsp2629T629TacAacT12AY.540.000095
ORF1ab/nsp2629T629TacAacT22B.1.1.1890.003026
ORF1ab/nsp2629T629TacAacT12B.1.1.280.000311
ORF1ab/nsp2629T629TacAacT22B.1.5270.007407
ORF1ab/nsp2629T629TacAacT22P.1.120.000968
ORF1ab/nsp2629T629TacAacT22R.10.00018
ORF1ab/nsp2629T629TacAacT11AY.10.000396
ORF1ab/nsp2629T629TacAacT11AY.290.000016
ORF1ab/nsp2629T629TacAacT11AY.340.000097
ORF1ab/nsp2629T629TacAacT11AY.390.000025
ORF1ab/nsp2629T629TacAacT11AY.450.000122
ORF1ab/nsp2629T629TacAacT11AY.590.00053
ORF1ab/nsp2629T629TacAacT11AY.740.000116
ORF1ab/nsp2629T629TacAacT11AY.850.000427
ORF1ab/nsp2629T629TacAacT11B.1.1.2730.006757
ORF1ab/nsp2629T629TacAacT11B.1.1.4090.002833
ORF1ab/nsp2629T629TacAacT11B.1.1.4320.001266
ORF1ab/nsp2629T629TacAacT11B.1.1.4370.010417
ORF1ab/nsp2629T629TacAacT11B.1.1.990.02381
ORF1ab/nsp2629T629TacAacT11B.1.110.30.000718
ORF1ab/nsp2629T629TacAacT11B.1.1770.000013
ORF1ab/nsp2629T629TacAacT11B.1.177.860.000183
ORF1ab/nsp2629T629TacAacT11B.1.2180.005155
ORF1ab/nsp2629T629TacAacT11B.1.220.001318
ORF1ab/nsp2629T629TacAacT11B.1.3670.000792
ORF1ab/nsp2629T629TacAacT11B.1.4290.000024
ORF1ab/nsp2629T629TacAacT11B.1.4410.009615
ORF1ab/nsp2629T629TacAacT11B.1.5950.000261
ORF1ab/nsp2629T629TacAacT11B.1.5960.000087
ORF1ab/nsp2629T629TacAacT11B.1.5990.00365
ORF1ab/nsp2629T629TacAacT11B.1.6000.005848
ORF1ab/nsp2629T629TacAacT11B.1.6010.030303
ORF1ab/nsp2629T629TacAacT11B.1.6280.000352
ORF1ab/nsp2629T629TacAacT11B.1.6370.000073
ORF1ab/nsp2629T629TacAacT11C.1.10.076923
ORF1ab/nsp2629T629TacAacT11P.1.160.000374
ORF1ab/nsp2629T629TacAacT11P.1.40.000977

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.