CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 629

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2629T629TT809TsynacAacT27041269310.9959322690-2692
ORF1ab/nsp2629T629TT809TsynacAacG27041940.00347622690-2692
ORF1ab/nsp2629T629TT809TsynacAacC27041160.0005916942690-2692
ORF1ab/nsp2629T629delT809deldelACA---818112690-2692
ORF1ab/nsp2629T629IT809InonsynaCaaTa686812690-2692
ORF1ab/nsp2629T629AT809AnonsynAcaGca9912690-2692
ORF1ab/nsp2629T629del1T809del1delacAac-8812690-2692
ORF1ab/nsp2629T629KT809KnonsynaCaaAa8812690-2692
ORF1ab/nsp2629T629ST809SnonsynAcaTca530.62690-2692
ORF1ab/nsp2629T629ST809SnonsynAcATcT520.42690-2692
ORF1ab/nsp2629T629PT809PnonsynAcaCca3312690-2692
ORF1ab/nsp2629T629VT809VnonsynACAGTT320.6666672690-2692
ORF1ab/nsp2629T629VT809VnonsynACaGTa310.3333332690-2692
ORF1ab/nsp2629T629del2T809del2delACa--a2212690-2692
ORF1ab/nsp2629T629RT809RnonsynaCaaGa2212690-2692
ORF1ab/nsp2629T629MT809MnonsynaCAaTG1112690-2692
ORF1ab/nsp2629T629ET809EnonsynACaGAa1112690-2692

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2629T629TacAacT2693127041All0.005151
ORF1ab/nsp2629T629TacAacG9427041All0.000018
ORF1ab/nsp2629T629TacAacC1627041All0.000003
ORF1ab/nsp2629T629TacAacT2044020440B.1.3510.60761
ORF1ab/nsp2629T629TacAacT32453245B.1.351.20.981846
ORF1ab/nsp2629T629TacAacT16491652B.1.351.50.988609
ORF1ab/nsp2629T629TacAacC31652B.1.351.50.001799
ORF1ab/nsp2629T629TacAacT11071107B.1.351.30.970202
ORF1ab/nsp2629T629TacAacT227230B.10.002079
ORF1ab/nsp2629T629TacAacG3230B.10.000027
ORF1ab/nsp2629T629delACA---8181All0.000015
ORF1ab/nsp2629T629IaCaaTa6868All0.000013
ORF1ab/nsp2629T629TacAacT3333B.1.1700.142241
ORF1ab/nsp2629T629TacAacT1729B.1.1.70.000015
ORF1ab/nsp2629T629TacAacG1229B.1.1.70.000011
ORF1ab/nsp2629T629TacAacT2425B.1.10.000435
ORF1ab/nsp2629T629TacAacG125B.1.10.000018
ORF1ab/nsp2629T629TacAacG2525B.1.621.10.012645
ORF1ab/nsp2629T629TacAacT2024AY.1030.000124
ORF1ab/nsp2629T629TacAacG424AY.1030.000025
ORF1ab/nsp2629T629TacAacT1415B0.001789
ORF1ab/nsp2629T629TacAacG115B0.000128
ORF1ab/nsp2629T629delACA---1414B.10.000128
ORF1ab/nsp2629T629TacAacG1213AY.30.000119
ORF1ab/nsp2629T629TacAacT113AY.30.00001
ORF1ab/nsp2629T629TacAacT1313B.1.351.10.5
ORF1ab/nsp2629T629TacAacT1313B.1.6200.012299
ORF1ab/nsp2629T629TacAacT1212B.1.1.3750.142857
ORF1ab/nsp2629T629IaCaaTa1111B.1.1.70.00001
ORF1ab/nsp2629T629IaCaaTa1010AY.40.000016
ORF1ab/nsp2629T629TacAacG710AY.40.000011
ORF1ab/nsp2629T629TacAacT310AY.40.000005
ORF1ab/nsp2629T629TacAacT1010B.1.4700.014045
ORF1ab/nsp2629T629TacAacT1010B.1.5240.014065
ORF1ab/nsp2629T629AAcaGca99All0.000002
ORF1ab/nsp2629T629KaCaaAa88All0.000002
ORF1ab/nsp2629T629del1acAac-88All0.000002
ORF1ab/nsp2629T629delACA---88B.1.1.70.000007
ORF1ab/nsp2629T629TacAacC88B.1.6210.000708
ORF1ab/nsp2629T629TacAacT77B.1.1600.000218
ORF1ab/nsp2629T629TacAacT67B.1.617.20.000023
ORF1ab/nsp2629T629TacAacG17B.1.617.20.000004
ORF1ab/nsp2629T629delACA---660.333333
ORF1ab/nsp2629T629TacAacG66B.1.36.170.002964
ORF1ab/nsp2629T629TacAacT66B.1.5540.026432
ORF1ab/nsp2629T629SAcaTca35All0.000001
ORF1ab/nsp2629T629SAcATcT25All0
ORF1ab/nsp2629T629TacAacC45AY.4.20.000087
ORF1ab/nsp2629T629TacAacT15AY.4.20.000022
ORF1ab/nsp2629T629TacAacT55B.1.1.3060.002192
ORF1ab/nsp2629T629TacAacT44AY.440.000024
ORF1ab/nsp2629T629TacAacT44B.1.1.5070.034783
ORF1ab/nsp2629T629TacAacT44B.1.177.730.002265
ORF1ab/nsp2629T629TacAacT44B.1.5250.000453
ORF1ab/nsp2629T629IaCaaTa44B.1.617.20.000015
ORF1ab/nsp2629T629TacAacG44P.10.000063
ORF1ab/nsp2629T629IaCaaTa33AE.80.001467
ORF1ab/nsp2629T629PAcaCca33All0.000001
ORF1ab/nsp2629T629VACAGTT23All0
ORF1ab/nsp2629T629VACaGTa13All0
ORF1ab/nsp2629T629IaCaaTa33AY.1030.000019
ORF1ab/nsp2629T629TacAacT33AY.430.000013
ORF1ab/nsp2629T629delACA---33B.1.10.000054
ORF1ab/nsp2629T629delACA---33B.1.1.330.001263
ORF1ab/nsp2629T629delACA---33B.1.1770.00004
ORF1ab/nsp2629T629delACA---33B.1.4290.000071
ORF1ab/nsp2629T629TacAacT33B.1.6090.001438
ORF1ab/nsp2629T629delACA---33B.1.617.20.000011
ORF1ab/nsp2629T629TacAacT33B.1.6360.020134
ORF1ab/nsp2629T629IaCaaTa220.111111
ORF1ab/nsp2629T629TacAacT22A0.000774
ORF1ab/nsp2629T629AAcaGca22A.2.40.006734
ORF1ab/nsp2629T629RaCaaGa22All0
ORF1ab/nsp2629T629del2ACa--a22All0
ORF1ab/nsp2629T629IaCaaTa22AY.230.000139
ORF1ab/nsp2629T629delACA---22AY.430.000009
ORF1ab/nsp2629T629IaCaaTa22AY.50.000041
ORF1ab/nsp2629T629TacAacG12AY.540.000095
ORF1ab/nsp2629T629TacAacT12AY.540.000095
ORF1ab/nsp2629T629IaCaaTa22B.10.000018
ORF1ab/nsp2629T629IaCaaTa22B.1.10.000036
ORF1ab/nsp2629T629TacAacT22B.1.1.1890.003026
ORF1ab/nsp2629T629TacAacT12B.1.1.280.000311
ORF1ab/nsp2629T629TacAacG12B.1.1.280.000311
ORF1ab/nsp2629T629delACA---22B.1.1.3150.016949
ORF1ab/nsp2629T629delACA---22B.1.1.3480.001592
ORF1ab/nsp2629T629SAcATcT22B.1.1.3750.02381
ORF1ab/nsp2629T629delACA---22B.1.1.460.008734
ORF1ab/nsp2629T629IaCaaTa22B.1.1.5190.000079
ORF1ab/nsp2629T629TacAacG22B.1.1.5190.000079
ORF1ab/nsp2629T629KaCaaAa22B.1.1.70.000002
ORF1ab/nsp2629T629IaCaaTa22B.1.1770.000026
ORF1ab/nsp2629T629delACA---22B.1.20.000018
ORF1ab/nsp2629T629del1acAac-22B.1.20.000018
ORF1ab/nsp2629T629IaCaaTa22B.1.20.000018
ORF1ab/nsp2629T629delACA---22B.1.4240.016129
ORF1ab/nsp2629T629delACA---22B.1.5260.000047
ORF1ab/nsp2629T629TacAacT22B.1.5270.007407
ORF1ab/nsp2629T629delACA---22N.60.014184
ORF1ab/nsp2629T629delACA---22P.10.000032
ORF1ab/nsp2629T629TacAacT22P.1.120.000968
ORF1ab/nsp2629T629TacAacT22R.10.00018
ORF1ab/nsp2629T629IaCaaTa11A.270.001656
ORF1ab/nsp2629T629EACaGAa11All0
ORF1ab/nsp2629T629MaCAaTG11All0
ORF1ab/nsp2629T629TacAacT11AY.10.000396
ORF1ab/nsp2629T629TacAacG11AY.1020.000027
ORF1ab/nsp2629T629delACA---11AY.1080.001103
ORF1ab/nsp2629T629TacAacG11AY.1130.000142
ORF1ab/nsp2629T629MaCAaTG11AY.1200.000037
ORF1ab/nsp2629T629IaCaaTa11AY.200.000039
ORF1ab/nsp2629T629delACA---11AY.250.000006
ORF1ab/nsp2629T629SAcaTca11AY.250.000006
ORF1ab/nsp2629T629TacAacG11AY.250.000006
ORF1ab/nsp2629T629delACA---11AY.260.000028
ORF1ab/nsp2629T629IaCaaTa11AY.260.000028
ORF1ab/nsp2629T629TacAacT11AY.290.000016
ORF1ab/nsp2629T629IaCaaTa11AY.30.00001
ORF1ab/nsp2629T629TacAacT11AY.340.000097
ORF1ab/nsp2629T629TacAacT11AY.390.000025
ORF1ab/nsp2629T629IaCaaTa11AY.39.10.00004
ORF1ab/nsp2629T629AAcaGca11AY.40.000002
ORF1ab/nsp2629T629delACA---11AY.40.000002
ORF1ab/nsp2629T629delACA---11AY.400.000964
ORF1ab/nsp2629T629IaCaaTa11AY.430.000004
ORF1ab/nsp2629T629IaCaaTa11AY.440.000006
ORF1ab/nsp2629T629TacAacT11AY.450.000122
ORF1ab/nsp2629T629delACA---11AY.50.000021
ORF1ab/nsp2629T629KaCaaAa11AY.510.000909
ORF1ab/nsp2629T629VACAGTT11AY.550.000917
ORF1ab/nsp2629T629TacAacT11AY.590.00053
ORF1ab/nsp2629T629TacAacG11AY.60.000041
ORF1ab/nsp2629T629delACA---11AY.60.000041
ORF1ab/nsp2629T629delACA---11AY.680.000274
ORF1ab/nsp2629T629PAcaCca11AY.700.000209
ORF1ab/nsp2629T629TacAacT11AY.740.000116
ORF1ab/nsp2629T629TacAacG11AY.790.001211
ORF1ab/nsp2629T629del1acAac-11AY.820.001357
ORF1ab/nsp2629T629TacAacT11AY.850.000427
ORF1ab/nsp2629T629TacAacG11AY.98.10.000048
ORF1ab/nsp2629T629delACA---11AY.98.10.000048
ORF1ab/nsp2629T629RaCaaGa11AY.98.10.000048
ORF1ab/nsp2629T629IaCaaTa11B0.000128
ORF1ab/nsp2629T629AAcaGca11B.10.000009
ORF1ab/nsp2629T629PAcaCca11B.10.000009
ORF1ab/nsp2629T629RaCaaGa11B.1.10.000018
ORF1ab/nsp2629T629AAcaGca11B.1.10.000018
ORF1ab/nsp2629T629KaCaaAa11B.1.10.000018
ORF1ab/nsp2629T629TacAacG11B.1.1.2160.00089
ORF1ab/nsp2629T629PAcaCca11B.1.1.250.000569
ORF1ab/nsp2629T629TacAacT11B.1.1.2730.006757
ORF1ab/nsp2629T629TacAacG11B.1.1.3180.000302
ORF1ab/nsp2629T629del1acAac-11B.1.1.3180.000302
ORF1ab/nsp2629T629del1acAac-11B.1.1.3560.008547
ORF1ab/nsp2629T629IaCaaTa11B.1.1.370.000193
ORF1ab/nsp2629T629TacAacC11B.1.1.370.000193
ORF1ab/nsp2629T629AAcaGca11B.1.1.3740.002375
ORF1ab/nsp2629T629IaCaaTa11B.1.1.390.00051
ORF1ab/nsp2629T629KaCaaAa11B.1.1.390.00051
ORF1ab/nsp2629T629TacAacT11B.1.1.4090.002833
ORF1ab/nsp2629T629delACA---11B.1.1.4160.000905
ORF1ab/nsp2629T629TacAacT11B.1.1.4320.001266
ORF1ab/nsp2629T629TacAacT11B.1.1.4370.010417
ORF1ab/nsp2629T629TacAacG11B.1.1.440.00241
ORF1ab/nsp2629T629del1acAac-11B.1.1.70.000001
ORF1ab/nsp2629T629VACaGTa11B.1.1.70.000001
ORF1ab/nsp2629T629AAcaGca11B.1.1.70.000001
ORF1ab/nsp2629T629delACA---11B.1.1.700.000341
ORF1ab/nsp2629T629TacAacT11B.1.1.990.02381
ORF1ab/nsp2629T629TacAacT11B.1.110.30.000718
ORF1ab/nsp2629T629del2ACa--a11B.1.1150.021739
ORF1ab/nsp2629T629IaCaaTa11B.1.140.017544
ORF1ab/nsp2629T629KaCaaAa11B.1.1600.000031
ORF1ab/nsp2629T629TacAacT11B.1.1770.000013
ORF1ab/nsp2629T629del1acAac-11B.1.1770.000013
ORF1ab/nsp2629T629TacAacG11B.1.177.480.003125
ORF1ab/nsp2629T629delACA---11B.1.177.510.004566
ORF1ab/nsp2629T629TacAacG11B.1.177.810.000189
ORF1ab/nsp2629T629TacAacT11B.1.177.860.000183
ORF1ab/nsp2629T629TacAacT11B.1.2180.005155
ORF1ab/nsp2629T629TacAacT11B.1.220.001318
ORF1ab/nsp2629T629IaCaaTa11B.1.221.10.002907
ORF1ab/nsp2629T629IaCaaTa11B.1.2430.00007
ORF1ab/nsp2629T629IaCaaTa11B.1.2580.000067
ORF1ab/nsp2629T629delACA---11B.1.2580.000067
ORF1ab/nsp2629T629IaCaaTa11B.1.258.30.001675
ORF1ab/nsp2629T629IaCaaTa11B.1.2890.00266
ORF1ab/nsp2629T629SAcaTca11B.1.3330.010526
ORF1ab/nsp2629T629TacAacG11B.1.36.180.00042
ORF1ab/nsp2629T629VACAGTT11B.1.36.290.000517
ORF1ab/nsp2629T629TacAacG11B.1.3610.001289
ORF1ab/nsp2629T629TacAacT11B.1.3670.000792
ORF1ab/nsp2629T629EACaGAa11B.1.4110.003704
ORF1ab/nsp2629T629TacAacT11B.1.4290.000024
ORF1ab/nsp2629T629IaCaaTa11B.1.4290.000024
ORF1ab/nsp2629T629TacAacT11B.1.4410.009615
ORF1ab/nsp2629T629KaCaaAa11B.1.466.20.000391
ORF1ab/nsp2629T629delACA---11B.1.5610.000397
ORF1ab/nsp2629T629del1acAac-11B.1.5740.002151
ORF1ab/nsp2629T629SAcaTca11B.1.5950.000261
ORF1ab/nsp2629T629TacAacT11B.1.5950.000261
ORF1ab/nsp2629T629del2ACa--a11B.1.5950.000261
ORF1ab/nsp2629T629KaCaaAa11B.1.5960.000087
ORF1ab/nsp2629T629TacAacT11B.1.5960.000087
ORF1ab/nsp2629T629TacAacT11B.1.5990.00365
ORF1ab/nsp2629T629TacAacT11B.1.6000.005848
ORF1ab/nsp2629T629TacAacT11B.1.6010.030303
ORF1ab/nsp2629T629delACA---11B.1.617.10.000129
ORF1ab/nsp2629T629delACA---11B.1.6210.000089
ORF1ab/nsp2629T629IaCaaTa11B.1.6210.000089
ORF1ab/nsp2629T629delACA---11B.1.621.10.000506
ORF1ab/nsp2629T629AAcaGca11B.1.6230.000536
ORF1ab/nsp2629T629TacAacG11B.1.6270.00202
ORF1ab/nsp2629T629TacAacT11B.1.6280.000352
ORF1ab/nsp2629T629TacAacT11B.1.6370.000073
ORF1ab/nsp2629T629delACA---11B.570.015152
ORF1ab/nsp2629T629IaCaaTa11B.60.00091
ORF1ab/nsp2629T629TacAacT11C.1.10.076923
ORF1ab/nsp2629T629IaCaaTa11D.20.000075
ORF1ab/nsp2629T629AAcaGca11P.1.100.000269
ORF1ab/nsp2629T629delACA---11P.1.150.000232
ORF1ab/nsp2629T629TacAacT11P.1.160.000374
ORF1ab/nsp2629T629TacAacT11P.1.40.000977
ORF1ab/nsp2629T629delACA---11Q.80.000165
ORF1ab/nsp2629T629IaCaaTa11Q.80.000165