CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 624 | P624S | P804S | nonsyn | Cct | Tct | 4837 | 4834 | 0.99938 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624S | P804S | nonsyn | CcT | TcA | 4837 | 2 | 0.000413479 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624S | P804S | nonsyn | CCt | AGt | 4837 | 1 | 0.00020674 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624L | P804L | nonsyn | cCt | cTt | 2893 | 2893 | 1 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624P | P804P | syn | ccT | ccC | 391 | 378 | 0.966752 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624P | P804P | syn | ccT | ccG | 391 | 7 | 0.0179028 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624P | P804P | syn | ccT | ccA | 391 | 6 | 0.0153453 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624T | P804T | nonsyn | Cct | Act | 87 | 85 | 0.977012 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624T | P804T | nonsyn | CcT | AcA | 87 | 2 | 0.0229885 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624del | P804del | del | CCT | --- | 80 | 80 | 1 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624H | P804H | nonsyn | cCt | cAt | 52 | 51 | 0.980769 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624H | P804H | nonsyn | cCT | cAC | 52 | 1 | 0.0192308 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624A | P804A | nonsyn | Cct | Gct | 8 | 8 | 1 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624del1 | P804del1 | del | Cct | -ct | 3 | 2 | 0.666667 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624del1 | P804del1 | del | ccT | cc- | 3 | 1 | 0.333333 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624R | P804R | nonsyn | cCt | cGt | 1 | 1 | 1 | 2675-2677 |
ORF1ab/nsp2 | 624 | P624D | P804D | nonsyn | CCt | GAt | 1 | 1 | 1 | 2675-2677 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 4834 | 4837 | All | 0.000925 |
ORF1ab/nsp2 | 624 | P624S | CcT | TcA | 2 | 4837 | All | 0 |
ORF1ab/nsp2 | 624 | P624S | CCt | AGt | 1 | 4837 | All | 0 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2893 | 2893 | All | 0.000553 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1249 | 1249 | AY.4 | 0.001944 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1125 | 1125 | AY.43 | 0.004984 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 781 | 781 | AU.1 | 0.988608 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 513 | 514 | B.1.1.7 | 0.000459 |
ORF1ab/nsp2 | 624 | P624S | CCt | AGt | 1 | 514 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 393 | 393 | B.1.1.7 | 0.000352 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 378 | 391 | All | 0.000072 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccG | 7 | 391 | All | 0.000001 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccA | 6 | 391 | All | 0.000001 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 329 | 329 | B.1 | 0.003013 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 193 | 193 | B.1.2 | 0.001699 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 149 | 149 | AY.103 | 0.000925 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 149 | 149 | B.1.617.2 | 0.000561 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 114 | 114 | P.1 | 0.001796 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 106 | 106 | AY.4 | 0.000165 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 102 | 102 | B.1.429 | 0.0024 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 90 | 90 | B.1.621 | 0.007967 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 85 | 87 | All | 0.000016 |
ORF1ab/nsp2 | 624 | P624T | CcT | AcA | 2 | 87 | All | 0 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 87 | 87 | B.1.1.374 | 0.206651 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 80 | 80 | All | 0.000015 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 71 | 71 | B.1.1 | 0.001288 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 70 | 70 | B.1.2 | 0.000616 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 67 | 67 | AY.44 | 0.000408 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 65 | 65 | AY.11 | 0.087015 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 62 | 62 | AA.5 | 1 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 62 | 62 | B.1.617.2 | 0.000233 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 61 | 61 | AY.103 | 0.000379 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 54 | 54 | AY.43 | 0.000239 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 54 | 54 | AY.98 | 0.004266 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 51 | 52 | All | 0.00001 |
ORF1ab/nsp2 | 624 | P624H | cCT | cAC | 1 | 52 | All | 0 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 51 | 51 | B.1 | 0.000467 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 49 | 49 | AY.25 | 0.000295 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 49 | 49 | B.1.177 | 0.000645 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 49 | 49 | B.1.36.18 | 0.020588 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 46 | 46 | Q.4 | 0.020919 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 44 | 44 | AY.39.1 | 0.001743 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 44 | 44 | B.1.1 | 0.000798 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 41 | 41 | B.1.1.448 | 0.083333 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 41 | 41 | B.1.351.5 | 0.02458 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 41 | 41 | B.1.427 | 0.00207 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 40 | 40 | AY.4.1 | 0.029499 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 39 | 39 | A | 0.015093 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 37 | 37 | B.1.1.519 | 0.001469 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 36 | 36 | AY.39 | 0.00089 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 36 | 36 | B.1.243 | 0.002505 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 30 | 30 | AY.25 | 0.00018 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 30 | 30 | AY.3 | 0.000298 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 30 | 30 | B.1.1.500 | 0.6 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 29 | 29 | B.1.214.2 | 0.017386 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 29 | 29 | Q.1 | 0.003663 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 28 | 28 | B.1.177 | 0.000369 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 26 | 26 | P.1.14 | 0.001243 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 25 | 25 | B.1 | 0.000229 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 25 | 25 | B.1.36.17 | 0.012352 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 24 | 24 | P.1 | 0.000378 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 23 | 23 | AY.102 | 0.00061 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 23 | 23 | B.1.1.222 | 0.004692 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 22 | 22 | AY.3 | 0.000219 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 22 | 22 | AY.75 | 0.001232 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 19 | 19 | AY.90 | 0.013005 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 19 | 19 | B.1.1.277 | 0.014416 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 19 | 19 | B.1.177.39 | 0.292308 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 19 | 19 | B.1.596 | 0.001656 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 17 | 17 | AY.39 | 0.00042 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 17 | 17 | B.1.139 | 0.012463 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 16 | 16 | P.2 | 0.002986 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 15 | 15 | B.1.36.1 | 0.017104 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 14 | 14 | AY.102 | 0.000371 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 14 | 14 | B.1.517 | 0.005978 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 13 | 13 | AY.23 | 0.000907 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 13 | 13 | B.1.1.265 | 0.041009 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 12 | 12 | AY.110 | 0.001352 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 12 | 12 | AY.42 | 0.000483 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 12 | 12 | B.1.160.26 | 0.029056 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 12 | 12 | B.1.588 | 0.010919 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 11 | 11 | AY.118 | 0.000689 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 11 | 11 | AY.39.1 | 0.000436 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 10 | 11 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccG | 1 | 11 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 10 | 10 | B.1.36.18 | 0.004202 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 9 | 9 | AY.17 | 0.07377 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 9 | 9 | AY.5.4 | 0.00249 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 9 | 9 | B.1.375 | 0.007377 |
ORF1ab/nsp2 | 624 | P624A | Cct | Gct | 8 | 8 | All | 0.000002 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 8 | 8 | B.1.336 | 0.019512 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 8 | 8 | B.1.466.2 | 0.00313 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 7 | 7 | AY.113 | 0.000997 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 7 | 7 | B.1.1.204 | 0.021277 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 7 | 7 | B.1.1.25 | 0.00398 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 7 | 7 | B.1.1.253 | 0.017544 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 7 | 7 | B.1.177.21 | 0.000535 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 7 | 7 | B.1.398 | 0.020833 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 6 | 6 | B.1.1.243 | 0.02449 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 6 | 6 | B.1.177.4 | 0.001266 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 6 | 6 | B.1.620 | 0.005676 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 6 | 6 | P.1.1 | 0.001906 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 5 | 5 | B.1.260 | 0.016722 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 5 | 5 | B.1.612 | 0.013263 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 5 | 5 | P.4 | 0.019011 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 4 | 4 | AY.10 | 0.00212 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 4 | 4 | AY.107 | 0.001864 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 4 | 4 | B.1.128 | 0.002541 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 4 | 4 | B.1.223 | 0.011111 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 4 | 4 | B.1.564 | 0.001704 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 4 | 4 | B.1.570 | 0.011765 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp2 | 624 | P624del1 | Cct | -ct | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 624 | P624del1 | ccT | cc- | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 624 | P624A | Cct | Gct | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 2 | 3 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccG | 1 | 3 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | AY.7.2 | 0.001678 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | B.1.306 | 0.017143 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp2 | 624 | P624S | CcT | TcA | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | A.5 | 0.003846 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.104 | 0.003968 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccG | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.1.308 | 0.023529 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.1.462 | 0.017241 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 624 | P624T | CcT | AcA | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.356 | 0.003454 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 2 | 2 | B.1.388 | 0.181818 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.540 | 0.019417 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.555 | 0.044444 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 624 | P624T | CcT | AcA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccA | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccA | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp2 | 624 | P624D | CCt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 624 | P624R | cCt | cGt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 624 | P624A | Cct | Gct | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 624 | P624A | Cct | Gct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 624 | P624A | Cct | Gct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 624 | P624D | CCt | GAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccG | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 624 | P624A | Cct | Gct | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.435 | 0.034483 |
ORF1ab/nsp2 | 624 | P624H | cCT | cAC | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp2 | 624 | P624del1 | Cct | -ct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccG | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 624 | P624A | Cct | Gct | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp2 | 624 | P624del1 | ccT | cc- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 624 | P624T | Cct | Act | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.348 | 0.018182 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.363 | 0.012987 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.428.3 | 0.012821 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.435 | 0.011364 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.487 | 0.019608 |
ORF1ab/nsp2 | 624 | P624R | cCt | cGt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.513 | 0.013889 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp2 | 624 | P624del1 | Cct | -ct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 624 | P624H | cCt | cAt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccC | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp2 | 624 | P624P | ccT | ccA | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 624 | P624L | cCt | cTt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp2 | 624 | P624del | CCT | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp2 | 624 | P624S | Cct | Tct | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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