CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 624

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2624P624SP804SnonsynCctTct483748340.999382675-2677
ORF1ab/nsp2624P624SP804SnonsynCcTTcA483720.0004134792675-2677
ORF1ab/nsp2624P624SP804SnonsynCCtAGt483710.000206742675-2677
ORF1ab/nsp2624P624LP804LnonsyncCtcTt2893289312675-2677
ORF1ab/nsp2624P624PP804PsynccTccC3913780.9667522675-2677
ORF1ab/nsp2624P624PP804PsynccTccG39170.01790282675-2677
ORF1ab/nsp2624P624PP804PsynccTccA39160.01534532675-2677
ORF1ab/nsp2624P624TP804TnonsynCctAct87850.9770122675-2677
ORF1ab/nsp2624P624TP804TnonsynCcTAcA8720.02298852675-2677
ORF1ab/nsp2624P624delP804deldelCCT---808012675-2677
ORF1ab/nsp2624P624HP804HnonsyncCtcAt52510.9807692675-2677
ORF1ab/nsp2624P624HP804HnonsyncCTcAC5210.01923082675-2677
ORF1ab/nsp2624P624AP804AnonsynCctGct8812675-2677
ORF1ab/nsp2624P624del1P804del1delCct-ct320.6666672675-2677
ORF1ab/nsp2624P624del1P804del1delccTcc-310.3333332675-2677
ORF1ab/nsp2624P624RP804RnonsyncCtcGt1112675-2677
ORF1ab/nsp2624P624DP804DnonsynCCtGAt1112675-2677

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2624P624SCctTct48344837All0.000925
ORF1ab/nsp2624P624SCcTTcA24837All0
ORF1ab/nsp2624P624SCCtAGt14837All0
ORF1ab/nsp2624P624LcCtcTt28932893All0.000553
ORF1ab/nsp2624P624SCctTct12491249AY.40.001944
ORF1ab/nsp2624P624SCctTct11251125AY.430.004984
ORF1ab/nsp2624P624LcCtcTt781781AU.10.988608
ORF1ab/nsp2624P624SCctTct513514B.1.1.70.000459
ORF1ab/nsp2624P624SCCtAGt1514B.1.1.70.000001
ORF1ab/nsp2624P624LcCtcTt393393B.1.1.70.000352
ORF1ab/nsp2624P624PccTccC378391All0.000072
ORF1ab/nsp2624P624PccTccG7391All0.000001
ORF1ab/nsp2624P624PccTccA6391All0.000001
ORF1ab/nsp2624P624PccTccC329329B.10.003013
ORF1ab/nsp2624P624SCctTct193193B.1.20.001699
ORF1ab/nsp2624P624SCctTct149149AY.1030.000925
ORF1ab/nsp2624P624SCctTct149149B.1.617.20.000561
ORF1ab/nsp2624P624SCctTct114114P.10.001796
ORF1ab/nsp2624P624LcCtcTt106106AY.40.000165
ORF1ab/nsp2624P624SCctTct102102B.1.4290.0024
ORF1ab/nsp2624P624LcCtcTt9090B.1.6210.007967
ORF1ab/nsp2624P624TCctAct8587All0.000016
ORF1ab/nsp2624P624TCcTAcA287All0
ORF1ab/nsp2624P624LcCtcTt8787B.1.1.3740.206651
ORF1ab/nsp2624P624delCCT---8080All0.000015
ORF1ab/nsp2624P624LcCtcTt7171B.1.10.001288
ORF1ab/nsp2624P624LcCtcTt7070B.1.20.000616
ORF1ab/nsp2624P624SCctTct6767AY.440.000408
ORF1ab/nsp2624P624LcCtcTt6565AY.110.087015
ORF1ab/nsp2624P624SCctTct6262AA.51
ORF1ab/nsp2624P624LcCtcTt6262B.1.617.20.000233
ORF1ab/nsp2624P624LcCtcTt6161AY.1030.000379
ORF1ab/nsp2624P624LcCtcTt5454AY.430.000239
ORF1ab/nsp2624P624SCctTct5454AY.980.004266
ORF1ab/nsp2624P624HcCtcAt5152All0.00001
ORF1ab/nsp2624P624HcCTcAC152All0
ORF1ab/nsp2624P624LcCtcTt5151B.10.000467
ORF1ab/nsp2624P624LcCtcTt4949AY.250.000295
ORF1ab/nsp2624P624SCctTct4949B.1.1770.000645
ORF1ab/nsp2624P624LcCtcTt4949B.1.36.180.020588
ORF1ab/nsp2624P624LcCtcTt4646Q.40.020919
ORF1ab/nsp2624P624SCctTct4444AY.39.10.001743
ORF1ab/nsp2624P624SCctTct4444B.1.10.000798
ORF1ab/nsp2624P624LcCtcTt4141B.1.1.4480.083333
ORF1ab/nsp2624P624LcCtcTt4141B.1.351.50.02458
ORF1ab/nsp2624P624SCctTct4141B.1.4270.00207
ORF1ab/nsp2624P624SCctTct4040AY.4.10.029499
ORF1ab/nsp2624P624LcCtcTt3939A0.015093
ORF1ab/nsp2624P624SCctTct3737B.1.1.5190.001469
ORF1ab/nsp2624P624LcCtcTt3636AY.390.00089
ORF1ab/nsp2624P624SCctTct3636B.1.2430.002505
ORF1ab/nsp2624P624SCctTct3030AY.250.00018
ORF1ab/nsp2624P624LcCtcTt3030AY.30.000298
ORF1ab/nsp2624P624SCctTct3030B.1.1.5000.6
ORF1ab/nsp2624P624TCctAct2929B.1.214.20.017386
ORF1ab/nsp2624P624SCctTct2929Q.10.003663
ORF1ab/nsp2624P624LcCtcTt2828B.1.1770.000369
ORF1ab/nsp2624P624SCctTct2626P.1.140.001243
ORF1ab/nsp2624P624SCctTct2525B.10.000229
ORF1ab/nsp2624P624SCctTct2525B.1.36.170.012352
ORF1ab/nsp2624P624LcCtcTt2424P.10.000378
ORF1ab/nsp2624P624SCctTct2323AY.1020.00061
ORF1ab/nsp2624P624LcCtcTt2323B.1.1.2220.004692
ORF1ab/nsp2624P624SCctTct2222AY.30.000219
ORF1ab/nsp2624P624SCctTct2222AY.750.001232
ORF1ab/nsp2624P624SCctTct2121B.1.5260.000494
ORF1ab/nsp2624P624SCctTct1919AY.900.013005
ORF1ab/nsp2624P624SCctTct1919B.1.1.2770.014416
ORF1ab/nsp2624P624LcCtcTt1919B.1.177.390.292308
ORF1ab/nsp2624P624LcCtcTt1919B.1.5960.001656
ORF1ab/nsp2624P624SCctTct1717AY.390.00042
ORF1ab/nsp2624P624HcCtcAt1717AY.40.000026
ORF1ab/nsp2624P624LcCtcTt1717B.1.1390.012463
ORF1ab/nsp2624P624LcCtcTt1616P.20.002986
ORF1ab/nsp2624P624SCctTct1515B.1.36.10.017104
ORF1ab/nsp2624P624LcCtcTt1414AY.1020.000371
ORF1ab/nsp2624P624delCCT---1414B.10.000128
ORF1ab/nsp2624P624LcCtcTt1414B.1.5170.005978
ORF1ab/nsp2624P624SCctTct1313AY.230.000907
ORF1ab/nsp2624P624LcCtcTt1313AY.260.000368
ORF1ab/nsp2624P624TCctAct1313B.1.1.2650.041009
ORF1ab/nsp2624P624SCctTct1212AY.1100.001352
ORF1ab/nsp2624P624SCctTct1212AY.420.000483
ORF1ab/nsp2624P624SCctTct1212B.1.160.260.029056
ORF1ab/nsp2624P624LcCtcTt1212B.1.3510.000357
ORF1ab/nsp2624P624LcCtcTt1212B.1.5880.010919
ORF1ab/nsp2624P624LcCtcTt1111AY.1180.000689
ORF1ab/nsp2624P624SCctTct1111AY.260.000311
ORF1ab/nsp2624P624LcCtcTt1111AY.39.10.000436
ORF1ab/nsp2624P624LcCtcTt1111AY.440.000067
ORF1ab/nsp2624P624LcCtcTt1111AY.470.000342
ORF1ab/nsp2624P624PccTccC1011B.1.1.70.000009
ORF1ab/nsp2624P624PccTccG111B.1.1.70.000001
ORF1ab/nsp2624P624SCctTct1111B.1.3510.000327
ORF1ab/nsp2624P624SCctTct1010AY.290.000158
ORF1ab/nsp2624P624LcCtcTt1010B.1.1600.000312
ORF1ab/nsp2624P624SCctTct1010B.1.36.180.004202
ORF1ab/nsp2624P624LcCtcTt1010B.1.5260.000235
ORF1ab/nsp2624P624SCctTct99AY.170.07377
ORF1ab/nsp2624P624LcCtcTt99AY.5.40.00249
ORF1ab/nsp2624P624LcCtcTt99AY.9.20.000331
ORF1ab/nsp2624P624LcCtcTt99B.1.3750.007377
ORF1ab/nsp2624P624ACctGct88All0.000002
ORF1ab/nsp2624P624LcCtcTt88AY.1000.000368
ORF1ab/nsp2624P624LcCtcTt88AY.290.000126
ORF1ab/nsp2624P624TCctAct88AY.30.00008
ORF1ab/nsp2624P624delCCT---88B.1.1.70.000007
ORF1ab/nsp2624P624SCctTct88B.1.1600.00025
ORF1ab/nsp2624P624PccTccC88B.1.3360.019512
ORF1ab/nsp2624P624LcCtcTt88B.1.466.20.00313
ORF1ab/nsp2624P624LcCtcTt88B.1.6370.000585
ORF1ab/nsp2624P624SCctTct88C.370.000929
ORF1ab/nsp2624P624SCctTct77AY.1130.000997
ORF1ab/nsp2624P624LcCtcTt77AY.50.000145
ORF1ab/nsp2624P624SCctTct77AY.50.000145
ORF1ab/nsp2624P624SCctTct77AY.98.10.000339
ORF1ab/nsp2624P624LcCtcTt77AY.99.20.000645
ORF1ab/nsp2624P624SCctTct77B.1.1.2040.021277
ORF1ab/nsp2624P624TCctAct77B.1.1.250.00398
ORF1ab/nsp2624P624LcCtcTt77B.1.1.2530.017544
ORF1ab/nsp2624P624LcCtcTt77B.1.177.210.000535
ORF1ab/nsp2624P624SCctTct77B.1.2580.000466
ORF1ab/nsp2624P624LcCtcTt77B.1.3980.020833
ORF1ab/nsp2624P624LcCtcTt77Q.30.001015
ORF1ab/nsp2624P624SCctTct66AY.1190.000212
ORF1ab/nsp2624P624LcCtcTt66AY.4.20.00013
ORF1ab/nsp2624P624SCctTct66AY.4.50.000645
ORF1ab/nsp2624P624SCctTct66AY.460.000624
ORF1ab/nsp2624P624LcCtcTt66AY.750.000336
ORF1ab/nsp2624P624LcCtcTt66AY.98.10.000291
ORF1ab/nsp2624P624SCctTct66B.1.1.2430.02449
ORF1ab/nsp2624P624SCctTct66B.1.1.280.001867
ORF1ab/nsp2624P624LcCtcTt66B.1.1.280.001867
ORF1ab/nsp2624P624LcCtcTt66B.1.1.5190.000238
ORF1ab/nsp2624P624LcCtcTt66B.1.177.40.001266
ORF1ab/nsp2624P624LcCtcTt66B.1.2400.001293
ORF1ab/nsp2624P624SCctTct66B.1.360.000875
ORF1ab/nsp2624P624LcCtcTt66B.1.4290.000141
ORF1ab/nsp2624P624SCctTct66B.1.6200.005676
ORF1ab/nsp2624P624LcCtcTt66P.1.10.001906
ORF1ab/nsp2624P624SCctTct55AY.46.60.000361
ORF1ab/nsp2624P624SCctTct55AY.470.000156
ORF1ab/nsp2624P624LcCtcTt55AY.7.10.000564
ORF1ab/nsp2624P624HcCtcAt55B.10.000046
ORF1ab/nsp2624P624LcCtcTt55B.1.1.370.000964
ORF1ab/nsp2624P624SCctTct55B.1.177.860.000917
ORF1ab/nsp2624P624LcCtcTt55B.1.2600.016722
ORF1ab/nsp2624P624LcCtcTt55B.1.36.290.002587
ORF1ab/nsp2624P624LcCtcTt55B.1.4270.000252
ORF1ab/nsp2624P624SCctTct55B.1.6120.013263
ORF1ab/nsp2624P624LcCtcTt55P.1.140.000239
ORF1ab/nsp2624P624SCctTct55P.40.019011
ORF1ab/nsp2624P624delCCT---440.222222
ORF1ab/nsp2624P624SCctTct44A.10.001127
ORF1ab/nsp2624P624LcCtcTt44AY.100.00212
ORF1ab/nsp2624P624LcCtcTt44AY.1070.001864
ORF1ab/nsp2624P624SCctTct44AY.200.000155
ORF1ab/nsp2624P624SCctTct44AY.330.000267
ORF1ab/nsp2624P624PccTccC44AY.440.000024
ORF1ab/nsp2624P624SCctTct44AY.450.000487
ORF1ab/nsp2624P624SCctTct44AY.610.000419
ORF1ab/nsp2624P624LcCtcTt44AY.690.000747
ORF1ab/nsp2624P624TCctAct44B.1.10.000073
ORF1ab/nsp2624P624LcCtcTt44B.1.1.2140.000222
ORF1ab/nsp2624P624HcCtcAt44B.1.1.70.000004
ORF1ab/nsp2624P624LcCtcTt44B.1.1280.002541
ORF1ab/nsp2624P624SCctTct44B.1.2230.011111
ORF1ab/nsp2624P624LcCtcTt44B.1.2430.000278
ORF1ab/nsp2624P624LcCtcTt44B.1.2580.000266
ORF1ab/nsp2624P624SCctTct44B.1.36.80.004
ORF1ab/nsp2624P624LcCtcTt44B.1.5640.001704
ORF1ab/nsp2624P624SCctTct44B.1.5700.011765
ORF1ab/nsp2624P624SCctTct44Q.80.00066
ORF1ab/nsp2624P624del1Cct-ct23All0
ORF1ab/nsp2624P624del1ccTcc-13All0
ORF1ab/nsp2624P624ACctGct33AY.1030.000019
ORF1ab/nsp2624P624LcCtcTt33AY.1170.000254
ORF1ab/nsp2624P624LcCtcTt33AY.1200.000112
ORF1ab/nsp2624P624SCctTct33AY.1210.000406
ORF1ab/nsp2624P624SCctTct33AY.140.000264
ORF1ab/nsp2624P624LcCtcTt33AY.370.000948
ORF1ab/nsp2624P624TCctAct33AY.40.000005
ORF1ab/nsp2624P624PccTccC23AY.40.000003
ORF1ab/nsp2624P624PccTccG13AY.40.000002
ORF1ab/nsp2624P624LcCtcTt33AY.420.000121
ORF1ab/nsp2624P624HcCtcAt33AY.430.000013
ORF1ab/nsp2624P624TCctAct33AY.440.000018
ORF1ab/nsp2624P624SCctTct33AY.46.20.001906
ORF1ab/nsp2624P624LcCtcTt33AY.610.000314
ORF1ab/nsp2624P624SCctTct33AY.640.001786
ORF1ab/nsp2624P624SCctTct33AY.7.20.001678
ORF1ab/nsp2624P624LcCtcTt33AY.740.000347
ORF1ab/nsp2624P624SCctTct33AY.880.002653
ORF1ab/nsp2624P624LcCtcTt33AY.90.000203
ORF1ab/nsp2624P624LcCtcTt33B0.000383
ORF1ab/nsp2624P624SCctTct33B.1.1.2140.000166
ORF1ab/nsp2624P624LcCtcTt33B.1.1.3110.001074
ORF1ab/nsp2624P624delCCT---33B.1.1.330.001263
ORF1ab/nsp2624P624LcCtcTt33B.1.1.3480.002389
ORF1ab/nsp2624P624LcCtcTt33B.1.1110.003525
ORF1ab/nsp2624P624delCCT---33B.1.1770.00004
ORF1ab/nsp2624P624SCctTct33B.1.177.40.000633
ORF1ab/nsp2624P624LcCtcTt33B.1.177.870.002183
ORF1ab/nsp2624P624LcCtcTt33B.1.2210.000213
ORF1ab/nsp2624P624LcCtcTt33B.1.2340.000396
ORF1ab/nsp2624P624SCctTct33B.1.2390.003663
ORF1ab/nsp2624P624LcCtcTt33B.1.3060.017143
ORF1ab/nsp2624P624delCCT---33B.1.4290.000071
ORF1ab/nsp2624P624SCctTct33B.1.5510.003871
ORF1ab/nsp2624P624SCctTct33B.1.6210.000266
ORF1ab/nsp2624P624LcCtcTt33B.1.6230.001609
ORF1ab/nsp2624P624SCctTct33C.160.003181
ORF1ab/nsp2624P624LcCtcTt33C.370.000348
ORF1ab/nsp2624P624LcCtcTt33D.20.000225
ORF1ab/nsp2624P624LcCtcTt33P.1.150.000697
ORF1ab/nsp2624P624SCcTTcA220.111111
ORF1ab/nsp2624P624SCctTct22A.2.50.000998
ORF1ab/nsp2624P624LcCtcTt22A.50.003846
ORF1ab/nsp2624P624SCctTct22AY.1000.000092
ORF1ab/nsp2624P624HcCtcAt22AY.1030.000012
ORF1ab/nsp2624P624SCctTct22AY.1040.003968
ORF1ab/nsp2624P624LcCtcTt22AY.1190.000071
ORF1ab/nsp2624P624LcCtcTt22AY.190.002281
ORF1ab/nsp2624P624LcCtcTt22AY.200.000078
ORF1ab/nsp2624P624TCctAct22AY.250.000012
ORF1ab/nsp2624P624PccTccG22AY.290.000032
ORF1ab/nsp2624P624HcCtcAt22AY.3.10.000171
ORF1ab/nsp2624P624LcCtcTt22AY.3.10.000171
ORF1ab/nsp2624P624SCctTct22AY.350.000466
ORF1ab/nsp2624P624SCctTct22AY.360.000296
ORF1ab/nsp2624P624SCctTct22AY.4.20.000043
ORF1ab/nsp2624P624SCctTct22AY.4.40.000818
ORF1ab/nsp2624P624delCCT---22AY.430.000009
ORF1ab/nsp2624P624HcCtcAt22AY.440.000012
ORF1ab/nsp2624P624LcCtcTt22AY.450.000243
ORF1ab/nsp2624P624SCctTct22AY.5.30.000675
ORF1ab/nsp2624P624SCctTct22AY.60.000082
ORF1ab/nsp2624P624HcCtcAt22AY.7.10.000225
ORF1ab/nsp2624P624SCctTct22AY.730.001331
ORF1ab/nsp2624P624HcCtcAt22AY.740.000231
ORF1ab/nsp2624P624SCctTct22AY.840.000875
ORF1ab/nsp2624P624SCctTct22AY.90.000135
ORF1ab/nsp2624P624LcCtcTt22AY.9.10.000167
ORF1ab/nsp2624P624SCctTct22AY.9.20.000073
ORF1ab/nsp2624P624SCctTct22AY.910.001461
ORF1ab/nsp2624P624LcCtcTt22AY.920.000575
ORF1ab/nsp2624P624delCCT---22B.1.10.000036
ORF1ab/nsp2624P624LcCtcTt22B.1.1.2070.002364
ORF1ab/nsp2624P624SCctTct22B.1.1.3060.000877
ORF1ab/nsp2624P624SCctTct22B.1.1.3080.023529
ORF1ab/nsp2624P624SCctTct22B.1.1.3110.000716
ORF1ab/nsp2624P624LcCtcTt22B.1.1.3120.003824
ORF1ab/nsp2624P624delCCT---22B.1.1.3150.016949
ORF1ab/nsp2624P624LcCtcTt22B.1.1.3260.003521
ORF1ab/nsp2624P624SCctTct22B.1.1.330.000842
ORF1ab/nsp2624P624delCCT---22B.1.1.3480.001592
ORF1ab/nsp2624P624LcCtcTt22B.1.1.4620.017241
ORF1ab/nsp2624P624SCctTct22B.1.1.500.001358
ORF1ab/nsp2624P624TCctAct12B.1.1.70.000001
ORF1ab/nsp2624P624TCcTAcA12B.1.1.70.000001
ORF1ab/nsp2624P624PccTccC22B.1.1430.042553
ORF1ab/nsp2624P624SCctTct22B.1.177.350.001382
ORF1ab/nsp2624P624SCctTct22B.1.177.420.001789
ORF1ab/nsp2624P624SCctTct22B.1.177.560.001335
ORF1ab/nsp2624P624PccTccC22B.1.20.000018
ORF1ab/nsp2624P624delCCT---22B.1.20.000018
ORF1ab/nsp2624P624SCctTct22B.1.2210.000142
ORF1ab/nsp2624P624SCctTct22B.1.2340.000264
ORF1ab/nsp2624P624PccTccC22B.1.351.20.000605
ORF1ab/nsp2624P624SCctTct22B.1.3560.003454
ORF1ab/nsp2624P624SCctTct22B.1.36.290.001035
ORF1ab/nsp2624P624LcCtcTt22B.1.36.80.002
ORF1ab/nsp2624P624PccTccC22B.1.3880.181818
ORF1ab/nsp2624P624delCCT---22B.1.4240.016129
ORF1ab/nsp2624P624LcCtcTt22B.1.438.10.000215
ORF1ab/nsp2624P624LcCtcTt22B.1.4590.008163
ORF1ab/nsp2624P624SCctTct22B.1.466.20.000782
ORF1ab/nsp2624P624TCctAct22B.1.5250.000226
ORF1ab/nsp2624P624LcCtcTt22B.1.5250.000226
ORF1ab/nsp2624P624delCCT---22B.1.5260.000047
ORF1ab/nsp2624P624SCctTct22B.1.5300.014286
ORF1ab/nsp2624P624LcCtcTt22B.1.5400.019417
ORF1ab/nsp2624P624SCctTct22B.1.5550.044444
ORF1ab/nsp2624P624LcCtcTt22B.1.5770.001375
ORF1ab/nsp2624P624SCctTct22B.1.5820.000981
ORF1ab/nsp2624P624SCctTct22B.1.5880.00182
ORF1ab/nsp2624P624LcCtcTt22B.1.5950.000522
ORF1ab/nsp2624P624SCctTct22B.1.5950.000522
ORF1ab/nsp2624P624SCctTct22B.1.5960.000174
ORF1ab/nsp2624P624LcCtcTt22B.1.617.10.000258
ORF1ab/nsp2624P624delCCT---22B.1.617.20.000008
ORF1ab/nsp2624P624PccTccC22B.1.617.20.000008
ORF1ab/nsp2624P624TCcTAcA12B.1.617.20.000004
ORF1ab/nsp2624P624TCctAct12B.1.617.20.000004
ORF1ab/nsp2624P624PccTccA22B.1.6370.000146
ORF1ab/nsp2624P624SCctTct22B.40.004415
ORF1ab/nsp2624P624PccTccA22D.20.00015
ORF1ab/nsp2624P624delCCT---22N.60.014184
ORF1ab/nsp2624P624delCCT---22P.10.000032
ORF1ab/nsp2624P624TCctAct22P.10.000032
ORF1ab/nsp2624P624LcCtcTt22P.1.100.000539
ORF1ab/nsp2624P624SCctTct22P.20.000373
ORF1ab/nsp2624P624LcCtcTt22Q.10.000253
ORF1ab/nsp2624P624HcCtcAt11A0.000387
ORF1ab/nsp2624P624SCctTct11A.20.000662
ORF1ab/nsp2624P624LcCtcTt11A.20.000662
ORF1ab/nsp2624P624SCctTct11A.270.001656
ORF1ab/nsp2624P624LcCtcTt11A.60.005128
ORF1ab/nsp2624P624SCctTct11AE.80.000489
ORF1ab/nsp2624P624DCCtGAt11All0
ORF1ab/nsp2624P624RcCtcGt11All0
ORF1ab/nsp2624P624SCctTct11AM.40.003571
ORF1ab/nsp2624P624LcCtcTt11AU.20.002421
ORF1ab/nsp2624P624SCctTct11AU.30.00211
ORF1ab/nsp2624P624LcCtcTt11AW.10.003049
ORF1ab/nsp2624P624SCctTct11AY.10.000396
ORF1ab/nsp2624P624ACctGct11AY.1020.000027
ORF1ab/nsp2624P624TCctAct11AY.1030.000006
ORF1ab/nsp2624P624SCctTct11AY.1060.000335
ORF1ab/nsp2624P624SCctTct11AY.1080.001103
ORF1ab/nsp2624P624delCCT---11AY.1080.001103
ORF1ab/nsp2624P624LcCtcTt11AY.1100.000113
ORF1ab/nsp2624P624PccTccC11AY.1110.000183
ORF1ab/nsp2624P624LcCtcTt11AY.1110.000183
ORF1ab/nsp2624P624LcCtcTt11AY.1130.000142
ORF1ab/nsp2624P624SCctTct11AY.1180.000063
ORF1ab/nsp2624P624PccTccG11AY.1200.000037
ORF1ab/nsp2624P624SCctTct11AY.1200.000037
ORF1ab/nsp2624P624LcCtcTt11AY.120.2.10.000498
ORF1ab/nsp2624P624LcCtcTt11AY.1210.000135
ORF1ab/nsp2624P624SCctTct11AY.130.000161
ORF1ab/nsp2624P624LcCtcTt11AY.130.000161
ORF1ab/nsp2624P624LcCtcTt11AY.140.000088
ORF1ab/nsp2624P624LcCtcTt11AY.160.00038
ORF1ab/nsp2624P624LcCtcTt11AY.16.10.00047
ORF1ab/nsp2624P624PccTccC11AY.200.000039
ORF1ab/nsp2624P624SCctTct11AY.240.000431
ORF1ab/nsp2624P624delCCT---11AY.250.000006
ORF1ab/nsp2624P624PccTccC11AY.250.000006
ORF1ab/nsp2624P624HcCtcAt11AY.250.000006
ORF1ab/nsp2624P624delCCT---11AY.260.000028
ORF1ab/nsp2624P624PccTccC11AY.260.000028
ORF1ab/nsp2624P624LcCtcTt11AY.270.000065
ORF1ab/nsp2624P624ACctGct11AY.30.00001
ORF1ab/nsp2624P624SCctTct11AY.320.000532
ORF1ab/nsp2624P624LcCtcTt11AY.330.000067
ORF1ab/nsp2624P624LcCtcTt11AY.340.000097
ORF1ab/nsp2624P624SCctTct11AY.340.000097
ORF1ab/nsp2624P624SCctTct11AY.34.10.00051
ORF1ab/nsp2624P624LcCtcTt11AY.360.000148
ORF1ab/nsp2624P624PccTccC11AY.390.000025
ORF1ab/nsp2624P624SCctTct11AY.39.20.001541
ORF1ab/nsp2624P624delCCT---11AY.40.000002
ORF1ab/nsp2624P624SCctTct11AY.4.2.10.000149
ORF1ab/nsp2624P624delCCT---11AY.400.000964
ORF1ab/nsp2624P624LcCtcTt11AY.400.000964
ORF1ab/nsp2624P624LcCtcTt11AY.410.000294
ORF1ab/nsp2624P624SCctTct11AY.410.000294
ORF1ab/nsp2624P624HcCtcAt11AY.420.00004
ORF1ab/nsp2624P624TCctAct11AY.430.000004
ORF1ab/nsp2624P624delCCT---11AY.440.000006
ORF1ab/nsp2624P624LcCtcTt11AY.46.10.001027
ORF1ab/nsp2624P624LcCtcTt11AY.46.40.000165
ORF1ab/nsp2624P624SCctTct11AY.46.50.000198
ORF1ab/nsp2624P624PccTccC11AY.470.000031
ORF1ab/nsp2624P624PccTccC11AY.50.000021
ORF1ab/nsp2624P624HcCtcAt11AY.50.000021
ORF1ab/nsp2624P624LcCtcTt11AY.5.30.000337
ORF1ab/nsp2624P624SCctTct11AY.5.40.000277
ORF1ab/nsp2624P624TCctAct11AY.510.000909
ORF1ab/nsp2624P624LcCtcTt11AY.510.000909
ORF1ab/nsp2624P624SCctTct11AY.520.000814
ORF1ab/nsp2624P624SCctTct11AY.530.000288
ORF1ab/nsp2624P624LcCtcTt11AY.550.000917
ORF1ab/nsp2624P624SCctTct11AY.550.000917
ORF1ab/nsp2624P624TCctAct11AY.550.000917
ORF1ab/nsp2624P624LcCtcTt11AY.580.000907
ORF1ab/nsp2624P624LcCtcTt11AY.590.00053
ORF1ab/nsp2624P624delCCT---11AY.60.000041
ORF1ab/nsp2624P624LcCtcTt11AY.60.000041
ORF1ab/nsp2624P624SCctTct11AY.620.000436
ORF1ab/nsp2624P624SCctTct11AY.670.000464
ORF1ab/nsp2624P624delCCT---11AY.680.000274
ORF1ab/nsp2624P624SCctTct11AY.690.000187
ORF1ab/nsp2624P624SCctTct11AY.710.000475
ORF1ab/nsp2624P624LcCtcTt11AY.720.001361
ORF1ab/nsp2624P624TCctAct11AY.75.10.00018
ORF1ab/nsp2624P624LcCtcTt11AY.75.10.00018
ORF1ab/nsp2624P624SCctTct11AY.760.004831
ORF1ab/nsp2624P624LcCtcTt11AY.780.001541
ORF1ab/nsp2624P624LcCtcTt11AY.820.001357
ORF1ab/nsp2624P624SCctTct11AY.850.000427
ORF1ab/nsp2624P624SCctTct11AY.890.004902
ORF1ab/nsp2624P624SCctTct11AY.9.10.000084
ORF1ab/nsp2624P624HcCtcAt11AY.9.10.000084
ORF1ab/nsp2624P624LcCtcTt11AY.910.00073
ORF1ab/nsp2624P624PccTccC11AY.920.000287
ORF1ab/nsp2624P624SCctTct11AY.950.000761
ORF1ab/nsp2624P624TCctAct11AY.950.000761
ORF1ab/nsp2624P624SCctTct11AY.960.002075
ORF1ab/nsp2624P624LcCtcTt11AY.980.000079
ORF1ab/nsp2624P624HcCtcAt11AY.98.10.000048
ORF1ab/nsp2624P624delCCT---11AY.98.10.000048
ORF1ab/nsp2624P624SCctTct11AY.99.20.000092
ORF1ab/nsp2624P624LcCtcTt11AZ.50.003509
ORF1ab/nsp2624P624HcCtcAt11B0.000128
ORF1ab/nsp2624P624PccTccC11B0.000128
ORF1ab/nsp2624P624TCctAct11B.10.000009
ORF1ab/nsp2624P624ACctGct11B.1.10.000018
ORF1ab/nsp2624P624DCCtGAt11B.1.10.000018
ORF1ab/nsp2624P624HcCtcAt11B.1.10.000018
ORF1ab/nsp2624P624LcCtcTt11B.1.1.1350.004695
ORF1ab/nsp2624P624LcCtcTt11B.1.1.1610.003534
ORF1ab/nsp2624P624SCctTct11B.1.1.1940.00495
ORF1ab/nsp2624P624LcCtcTt11B.1.1.2200.001859
ORF1ab/nsp2624P624TCctAct11B.1.1.2220.000204
ORF1ab/nsp2624P624SCctTct11B.1.1.2320.001815
ORF1ab/nsp2624P624PccTccG11B.1.1.250.000569
ORF1ab/nsp2624P624LcCtcTt11B.1.1.2540.011236
ORF1ab/nsp2624P624LcCtcTt11B.1.1.2610.008621
ORF1ab/nsp2624P624LcCtcTt11B.1.1.2630.001558
ORF1ab/nsp2624P624LcCtcTt11B.1.1.2650.003155
ORF1ab/nsp2624P624LcCtcTt11B.1.1.2730.006757
ORF1ab/nsp2624P624LcCtcTt11B.1.1.2770.000759
ORF1ab/nsp2624P624LcCtcTt11B.1.1.2840.000107
ORF1ab/nsp2624P624SCctTct11B.1.1.2860.002899
ORF1ab/nsp2624P624SCctTct11B.1.1.3010.001179
ORF1ab/nsp2624P624LcCtcTt11B.1.1.3060.000438
ORF1ab/nsp2624P624PccTccA11B.1.1.3060.000438
ORF1ab/nsp2624P624SCctTct11B.1.1.3070.002532
ORF1ab/nsp2624P624SCctTct11B.1.1.3150.008475
ORF1ab/nsp2624P624LcCtcTt11B.1.1.3170.000412
ORF1ab/nsp2624P624LcCtcTt11B.1.1.330.000421
ORF1ab/nsp2624P624ACctGct11B.1.1.3370.003597
ORF1ab/nsp2624P624SCctTct11B.1.1.340.013158
ORF1ab/nsp2624P624LcCtcTt11B.1.1.3720.000689
ORF1ab/nsp2624P624LcCtcTt11B.1.1.3890.006061
ORF1ab/nsp2624P624SCctTct11B.1.1.3970.002252
ORF1ab/nsp2624P624LcCtcTt11B.1.1.3980.003226
ORF1ab/nsp2624P624delCCT---11B.1.1.4160.000905
ORF1ab/nsp2624P624LcCtcTt11B.1.1.4170.002703
ORF1ab/nsp2624P624LcCtcTt11B.1.1.4200.001006
ORF1ab/nsp2624P624SCctTct11B.1.1.4320.001266
ORF1ab/nsp2624P624LcCtcTt11B.1.1.4350.034483
ORF1ab/nsp2624P624HcCTcAC11B.1.1.460.004367
ORF1ab/nsp2624P624delCCT---11B.1.1.460.004367
ORF1ab/nsp2624P624delCCT---11B.1.1.5170.006803
ORF1ab/nsp2624P624SCctTct11B.1.1.5230.001563
ORF1ab/nsp2624P624LcCtcTt11B.1.1.560.017857
ORF1ab/nsp2624P624LcCtcTt11B.1.1.610.008772
ORF1ab/nsp2624P624SCctTct11B.1.1.630.000386
ORF1ab/nsp2624P624delCCT---11B.1.1.700.000341
ORF1ab/nsp2624P624delCCT---11B.1.1400.018868
ORF1ab/nsp2624P624delCCT---11B.1.1600.000031
ORF1ab/nsp2624P624SCctTct11B.1.160.140.002119
ORF1ab/nsp2624P624LcCtcTt11B.1.160.300.002976
ORF1ab/nsp2624P624del1Cct-ct11B.1.1770.000013
ORF1ab/nsp2624P624SCctTct11B.1.177.120.000152
ORF1ab/nsp2624P624SCctTct11B.1.177.210.000076
ORF1ab/nsp2624P624SCctTct11B.1.177.230.003236
ORF1ab/nsp2624P624delCCT---11B.1.177.510.004566
ORF1ab/nsp2624P624SCctTct11B.1.177.530.002392
ORF1ab/nsp2624P624PccTccG11B.1.177.530.002392
ORF1ab/nsp2624P624SCctTct11B.1.177.570.000281
ORF1ab/nsp2624P624SCctTct11B.1.177.600.000218
ORF1ab/nsp2624P624LcCtcTt11B.1.177.70.000165
ORF1ab/nsp2624P624LcCtcTt11B.1.177.80.000752
ORF1ab/nsp2624P624SCctTct11B.1.177.80.000752
ORF1ab/nsp2624P624SCctTct11B.1.177.850.005435
ORF1ab/nsp2624P624TCctAct11B.1.20.000009
ORF1ab/nsp2624P624HcCtcAt11B.1.2060.000816
ORF1ab/nsp2624P624LcCtcTt11B.1.2220.001692
ORF1ab/nsp2624P624LcCtcTt11B.1.2370.004975
ORF1ab/nsp2624P624SCctTct11B.1.2400.000216
ORF1ab/nsp2624P624ACctGct11B.1.2410.000812
ORF1ab/nsp2624P624del1ccTcc-11B.1.2430.00007
ORF1ab/nsp2624P624delCCT---11B.1.2580.000067
ORF1ab/nsp2624P624TCctAct11B.1.2580.000067
ORF1ab/nsp2624P624HcCtcAt11B.1.2890.00266
ORF1ab/nsp2624P624LcCtcTt11B.1.3150.006061
ORF1ab/nsp2624P624LcCtcTt11B.1.3480.018182
ORF1ab/nsp2624P624PccTccC11B.1.3490.000715
ORF1ab/nsp2624P624LcCtcTt11B.1.351.20.000303
ORF1ab/nsp2624P624SCctTct11B.1.351.30.000876
ORF1ab/nsp2624P624LcCtcTt11B.1.36.100.004785
ORF1ab/nsp2624P624SCctTct11B.1.36.100.004785
ORF1ab/nsp2624P624SCctTct11B.1.36.250.002208
ORF1ab/nsp2624P624PccTccC11B.1.36.360.000602
ORF1ab/nsp2624P624LcCtcTt11B.1.3620.001541
ORF1ab/nsp2624P624LcCtcTt11B.1.3630.012987
ORF1ab/nsp2624P624SCctTct11B.1.3900.010638
ORF1ab/nsp2624P624LcCtcTt11B.1.3910.001127
ORF1ab/nsp2624P624SCctTct11B.1.4080.00369
ORF1ab/nsp2624P624PccTccC11B.1.4170.028571
ORF1ab/nsp2624P624SCctTct11B.1.428.30.012821
ORF1ab/nsp2624P624PccTccC11B.1.4330.003195
ORF1ab/nsp2624P624LcCtcTt11B.1.4350.011364
ORF1ab/nsp2624P624SCctTct11B.1.4380.006536
ORF1ab/nsp2624P624LcCtcTt11B.1.4620.007246
ORF1ab/nsp2624P624PccTccC11B.1.4700.001404
ORF1ab/nsp2624P624SCctTct11B.1.4870.019608
ORF1ab/nsp2624P624RcCtcGt11B.1.4970.000315
ORF1ab/nsp2624P624SCctTct11B.1.4970.000315
ORF1ab/nsp2624P624SCctTct11B.1.4990.00105
ORF1ab/nsp2624P624LcCtcTt11B.1.4990.00105
ORF1ab/nsp2624P624SCctTct11B.1.5130.013889
ORF1ab/nsp2624P624SCctTct11B.1.5170.000427
ORF1ab/nsp2624P624SCctTct11B.1.5270.003704
ORF1ab/nsp2624P624SCctTct11B.1.5610.000397
ORF1ab/nsp2624P624LcCtcTt11B.1.5610.000397
ORF1ab/nsp2624P624delCCT---11B.1.5610.000397
ORF1ab/nsp2624P624LcCtcTt11B.1.5750.000303
ORF1ab/nsp2624P624SCctTct11B.1.5770.000687
ORF1ab/nsp2624P624LcCtcTt11B.1.5800.004065
ORF1ab/nsp2624P624SCctTct11B.1.596.10.009346
ORF1ab/nsp2624P624SCctTct11B.1.6100.003546
ORF1ab/nsp2624P624del1Cct-ct11B.1.617.10.000129
ORF1ab/nsp2624P624delCCT---11B.1.617.10.000129
ORF1ab/nsp2624P624SCctTct11B.1.617.10.000129
ORF1ab/nsp2624P624HcCtcAt11B.1.617.20.000004
ORF1ab/nsp2624P624delCCT---11B.1.6210.000089
ORF1ab/nsp2624P624delCCT---11B.1.621.10.000506
ORF1ab/nsp2624P624SCctTct11B.1.6230.000536
ORF1ab/nsp2624P624HcCtcAt11B.1.6230.000536
ORF1ab/nsp2624P624SCctTct11B.1.6280.000352
ORF1ab/nsp2624P624LcCtcTt11B.3.10.001658
ORF1ab/nsp2624P624LcCtcTt11B.550.00295
ORF1ab/nsp2624P624delCCT---11B.570.015152
ORF1ab/nsp2624P624LcCtcTt11B.580.010204
ORF1ab/nsp2624P624PccTccC11B.60.00091
ORF1ab/nsp2624P624SCctTct11C.10.002392
ORF1ab/nsp2624P624PccTccA11C.360.000911
ORF1ab/nsp2624P624SCctTct11D.20.000075
ORF1ab/nsp2624P624LcCtcTt11N.50.001767
ORF1ab/nsp2624P624SCctTct11P.1.120.000484
ORF1ab/nsp2624P624SCctTct11P.1.150.000232
ORF1ab/nsp2624P624delCCT---11P.1.150.000232
ORF1ab/nsp2624P624SCctTct11P.1.60.001946
ORF1ab/nsp2624P624SCctTct11P.1.80.004785
ORF1ab/nsp2624P624SCctTct11Q.40.000455
ORF1ab/nsp2624P624delCCT---11Q.80.000165
ORF1ab/nsp2624P624LcCtcTt11R.10.00009
ORF1ab/nsp2624P624delCCT---11U.30.003861
ORF1ab/nsp2624P624SCctTct11U.30.003861