CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 618

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2618K618KK798KsynaaGaaA9467946712657-2659
ORF1ab/nsp2618K618NK798NnonsynaaGaaT362535460.9782072657-2659
ORF1ab/nsp2618K618NK798NnonsynaaGaaC3625790.02179312657-2659
ORF1ab/nsp2618K618RK798RnonsynaAgaGg1911900.9947642657-2659
ORF1ab/nsp2618K618RK798RnonsynaAGaGA19110.00523562657-2659
ORF1ab/nsp2618K618delK798deldelAAG---10810812657-2659
ORF1ab/nsp2618K618MK798MnonsynaAgaTg939312657-2659
ORF1ab/nsp2618K618TK798TnonsynaAgaCg73700.9589042657-2659
ORF1ab/nsp2618K618TK798TnonsynaAGaCT7320.02739732657-2659
ORF1ab/nsp2618K618TK798TnonsynaAGaCA7310.01369862657-2659
ORF1ab/nsp2618K618QK798QnonsynAagCag45440.9777782657-2659
ORF1ab/nsp2618K618QK798QnonsynAaGCaA4510.02222222657-2659
ORF1ab/nsp2618K618EK798EnonsynAagGag262612657-2659
ORF1ab/nsp2618K618del1K798del1delAag-ag520.42657-2659
ORF1ab/nsp2618K618XK798XnonsynAagTag520.42657-2659
ORF1ab/nsp2618K618XK798XnonsynAaGTaA520.42657-2659
ORF1ab/nsp2618K618del1K798del1delAAG-TT510.22657-2659
ORF1ab/nsp2618K618del1K798del1delaAGaG-510.22657-2659
ORF1ab/nsp2618K618XK798XnonsynAAGTGA510.22657-2659
ORF1ab/nsp2618K618del1K798del1delaaGaa-510.22657-2659
ORF1ab/nsp2618K618LK798LnonsynAAgCTg420.52657-2659
ORF1ab/nsp2618K618del2K798del2delAAg--g420.52657-2659
ORF1ab/nsp2618K618LK798LnonsynAAGCTT420.52657-2659
ORF1ab/nsp2618K618del2K798del2delAAG--A410.252657-2659
ORF1ab/nsp2618K618del2K798del2delAAG--T410.252657-2659
ORF1ab/nsp2618K618PK798PnonsynAAgCCg320.6666672657-2659
ORF1ab/nsp2618K618SK798SnonsynaAGaGT320.6666672657-2659
ORF1ab/nsp2618K618PK798PnonsynAAGCCA310.3333332657-2659
ORF1ab/nsp2618K618SK798SnonsynAAGTCC310.3333332657-2659
ORF1ab/nsp2618K618IK798InonsynaAGaTT2212657-2659
ORF1ab/nsp2618K618VK798VnonsynAAGGTT210.52657-2659
ORF1ab/nsp2618K618VK798VnonsynAAgGTg210.52657-2659
ORF1ab/nsp2618K618AK798AnonsynAAgGCg1112657-2659
ORF1ab/nsp2618K618FK798FnonsynAAGTTC1112657-2659
ORF1ab/nsp2618K618WK798WnonsynAAgTGg1112657-2659

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2618K618KaaGaaA94679467All0.001811
ORF1ab/nsp2618K618KaaGaaA85378537B.1.5250.966052
ORF1ab/nsp2618K618NaaGaaT35463625All0.000678
ORF1ab/nsp2618K618NaaGaaC793625All0.000015
ORF1ab/nsp2618K618NaaGaaT12871287B.1.5260.03025
ORF1ab/nsp2618K618KaaGaaA441441AY.40.000686
ORF1ab/nsp2618K618NaaGaaT269278B.1.1.70.000241
ORF1ab/nsp2618K618NaaGaaC9278B.1.1.70.000008
ORF1ab/nsp2618K618NaaGaaT277277AM.40.989286
ORF1ab/nsp2618K618NaaGaaT202240AY.40.000314
ORF1ab/nsp2618K618NaaGaaC38240AY.40.000059
ORF1ab/nsp2618K618RaAgaGg190191All0.000036
ORF1ab/nsp2618K618RaAGaGA1191All0
ORF1ab/nsp2618K618NaaGaaT110110B.1.617.20.000414
ORF1ab/nsp2618K618delAAG---108108All0.000021
ORF1ab/nsp2618K618KaaGaaA108108B.1.1.70.000097
ORF1ab/nsp2618K618MaAgaTg9393All0.000018
ORF1ab/nsp2618K618NaaGaaT8989AY.430.000394
ORF1ab/nsp2618K618NaaGaaT8888B.1.36.20.946237
ORF1ab/nsp2618K618KaaGaaA8383B.10.00076
ORF1ab/nsp2618K618NaaGaaT7678B.10.000696
ORF1ab/nsp2618K618NaaGaaC278B.10.000018
ORF1ab/nsp2618K618TaAgaCg7073All0.000013
ORF1ab/nsp2618K618TaAGaCT273All0
ORF1ab/nsp2618K618TaAGaCA173All0
ORF1ab/nsp2618K618NaaGaaT6869B.1.20.000599
ORF1ab/nsp2618K618NaaGaaC169B.1.20.000009
ORF1ab/nsp2618K618NaaGaaT5354AY.440.000323
ORF1ab/nsp2618K618NaaGaaC154AY.440.000006
ORF1ab/nsp2618K618NaaGaaT5252B.1.10.000943
ORF1ab/nsp2618K618NaaGaaT5152B.1.4290.0012
ORF1ab/nsp2618K618NaaGaaC152B.1.4290.000024
ORF1ab/nsp2618K618KaaGaaA4646AY.320.024494
ORF1ab/nsp2618K618RaAgaGg4546B.1.1.70.00004
ORF1ab/nsp2618K618RaAGaGA146B.1.1.70.000001
ORF1ab/nsp2618K618QAagCag4445All0.000008
ORF1ab/nsp2618K618QAaGCaA145All0
ORF1ab/nsp2618K618NaaGaaT4445AY.200.00171
ORF1ab/nsp2618K618NaaGaaC145AY.200.000039
ORF1ab/nsp2618K618NaaGaaT4042P.10.00063
ORF1ab/nsp2618K618NaaGaaC242P.10.000032
ORF1ab/nsp2618K618NaaGaaT3636AY.250.000217
ORF1ab/nsp2618K618NaaGaaT3535B.1.177.870.025473
ORF1ab/nsp2618K618NaaGaaT3434AY.260.000963
ORF1ab/nsp2618K618RaAgaGg3333AY.250.000198
ORF1ab/nsp2618K618KaaGaaA3131B.1.10.000562
ORF1ab/nsp2618K618NaaGaaT3030AY.390.000741
ORF1ab/nsp2618K618NaaGaaT3030B.1.1.390.015291
ORF1ab/nsp2618K618NaaGaaT2829AY.1030.000174
ORF1ab/nsp2618K618NaaGaaC129AY.1030.000006
ORF1ab/nsp2618K618NaaGaaT2828AY.1210.003789
ORF1ab/nsp2618K618KaaGaaA2727C.1.20.114894
ORF1ab/nsp2618K618EAagGag2626All0.000005
ORF1ab/nsp2618K618KaaGaaA2424B.1.617.20.00009
ORF1ab/nsp2618K618KaaGaaA2323B.1.20.000203
ORF1ab/nsp2618K618NaaGaaT2222B.1.1.2180.169231
ORF1ab/nsp2618K618MaAgaTg2121AY.1020.000557
ORF1ab/nsp2618K618delAAG---2121B.1.1.70.000019
ORF1ab/nsp2618K618NaaGaaT1919AY.30.000189
ORF1ab/nsp2618K618NaaGaaT1919B.1.1.2220.003876
ORF1ab/nsp2618K618NaaGaaT1919B.1.5750.005765
ORF1ab/nsp2618K618NaaGaaT1919P.20.003546
ORF1ab/nsp2618K618NaaGaaT1717AY.1020.000451
ORF1ab/nsp2618K618NaaGaaT1016AY.330.000668
ORF1ab/nsp2618K618NaaGaaC616AY.330.000401
ORF1ab/nsp2618K618MaAgaTg1616AY.40.000025
ORF1ab/nsp2618K618NaaGaaT1116B.1.1.5190.000437
ORF1ab/nsp2618K618NaaGaaC516B.1.1.5190.000199
ORF1ab/nsp2618K618KaaGaaA1616B.1.5820.007851
ORF1ab/nsp2618K618NaaGaaT1616D.20.001201
ORF1ab/nsp2618K618RaAgaGg1515B.1.160.120.096154
ORF1ab/nsp2618K618NaaGaaT1515C.370.001741
ORF1ab/nsp2618K618NaaGaaT1414AY.46.60.001011
ORF1ab/nsp2618K618TaAgaCg1414AY.80.008485
ORF1ab/nsp2618K618NaaGaaT1414AY.90.000946
ORF1ab/nsp2618K618QAagCag1313B.1.1.70.000012
ORF1ab/nsp2618K618MaAgaTg1313B.1.1.70.000012
ORF1ab/nsp2618K618NaaGaaT1013B.1.1770.000132
ORF1ab/nsp2618K618NaaGaaC313B.1.1770.00004
ORF1ab/nsp2618K618NaaGaaT1212AY.50.000248
ORF1ab/nsp2618K618delAAG---1212B.10.00011
ORF1ab/nsp2618K618NaaGaaT1212B.1.258.170.001248
ORF1ab/nsp2618K618NaaGaaT1111AY.4.10.008112
ORF1ab/nsp2618K618RaAgaGg1111B.10.000101
ORF1ab/nsp2618K618KaaGaaA1111B.1.1.2940.013924
ORF1ab/nsp2618K618RaAgaGg1111B.1.20.000097
ORF1ab/nsp2618K618KaaGaaA1010AY.250.00006
ORF1ab/nsp2618K618NaaGaaT1010B.1.1.4160.00905
ORF1ab/nsp2618K618NaaGaaT1010B.1.177.210.000765
ORF1ab/nsp2618K618NaaGaaT1010B.1.2580.000665
ORF1ab/nsp2618K618QAagCag99AY.200.00035
ORF1ab/nsp2618K618RaAgaGg99AY.40.000014
ORF1ab/nsp2618K618NaaGaaT99AY.4.50.000967
ORF1ab/nsp2618K618NaaGaaT89B.1.617.10.001032
ORF1ab/nsp2618K618NaaGaaC19B.1.617.10.000129
ORF1ab/nsp2618K618KaaGaaA88AY.1030.00005
ORF1ab/nsp2618K618MaAgaTg88AY.420.000322
ORF1ab/nsp2618K618RaAgaGg88AY.460.000833
ORF1ab/nsp2618K618MaAgaTg77AY.30.00007
ORF1ab/nsp2618K618NaaGaaT77AY.7.10.000789
ORF1ab/nsp2618K618NaaGaaT77AY.98.10.000339
ORF1ab/nsp2618K618TaAgaCg77AY.98.10.000339
ORF1ab/nsp2618K618NaaGaaT77B.1.1.5070.06087
ORF1ab/nsp2618K618TaAgaCg77B.1.4000.003003
ORF1ab/nsp2618K618NaaGaaT77P.1.150.001626
ORF1ab/nsp2618K618TaAgaCg66AY.1030.000037
ORF1ab/nsp2618K618NaaGaaT66AY.290.000095
ORF1ab/nsp2618K618QAagCag66AY.40.000009
ORF1ab/nsp2618K618KaaGaaA66AY.430.000027
ORF1ab/nsp2618K618NaaGaaT66AY.46.40.000987
ORF1ab/nsp2618K618NaaGaaT66AY.540.000572
ORF1ab/nsp2618K618NaaGaaT66B.1.3510.000178
ORF1ab/nsp2618K618NaaGaaT66B.1.429.10.072289
ORF1ab/nsp2618K618KaaGaaA66B.1.5240.008439
ORF1ab/nsp2618K618KaaGaaA66C.36.3.10.016304
ORF1ab/nsp2618K618KaaGaaA66P.10.000095
ORF1ab/nsp2618K618del1Aag-ag25All0
ORF1ab/nsp2618K618XAagTag25All0
ORF1ab/nsp2618K618XAaGTaA25All0
ORF1ab/nsp2618K618del1aAGaG-15All0
ORF1ab/nsp2618K618del1AAG-TT15All0
ORF1ab/nsp2618K618del1aaGaa-15All0
ORF1ab/nsp2618K618XAAGTGA15All0
ORF1ab/nsp2618K618NaaGaaT55AY.1000.00023
ORF1ab/nsp2618K618NaaGaaT55AY.1130.000712
ORF1ab/nsp2618K618NaaGaaT55AY.1190.000177
ORF1ab/nsp2618K618NaaGaaT55AY.1200.000186
ORF1ab/nsp2618K618delAAG---55AY.430.000022
ORF1ab/nsp2618K618EAagGag55AY.430.000022
ORF1ab/nsp2618K618KaaGaaA55AY.440.00003
ORF1ab/nsp2618K618RaAgaGg55AY.90.000338
ORF1ab/nsp2618K618NaaGaaT55AY.9.20.000184
ORF1ab/nsp2618K618NaaGaaT55AY.980.000395
ORF1ab/nsp2618K618delAAG---55B.1.10.000091
ORF1ab/nsp2618K618NaaGaaT55B.1.1.2840.000537
ORF1ab/nsp2618K618NaaGaaT55B.1.1.370.000964
ORF1ab/nsp2618K618NaaGaaT55B.1.1.4030.128205
ORF1ab/nsp2618K618TaAgaCg55B.1.1.70.000004
ORF1ab/nsp2618K618NaaGaaT35B.1.2430.000209
ORF1ab/nsp2618K618NaaGaaC25B.1.2430.000139
ORF1ab/nsp2618K618TaAgaCg55B.1.2580.000333
ORF1ab/nsp2618K618NaaGaaT55B.1.4881
ORF1ab/nsp2618K618NaaGaaT55B.1.5950.001305
ORF1ab/nsp2618K618delAAG---440.222222
ORF1ab/nsp2618K618NaaGaaT44A.2.50.001996
ORF1ab/nsp2618K618del2AAg--g24All0
ORF1ab/nsp2618K618LAAgCTg24All0
ORF1ab/nsp2618K618LAAGCTT24All0
ORF1ab/nsp2618K618del2AAG--T14All0
ORF1ab/nsp2618K618del2AAG--A14All0
ORF1ab/nsp2618K618MaAgaTg44AY.250.000024
ORF1ab/nsp2618K618NaaGaaT44AY.270.000259
ORF1ab/nsp2618K618NaaGaaT34AY.610.000314
ORF1ab/nsp2618K618NaaGaaC14AY.610.000105
ORF1ab/nsp2618K618NaaGaaT44AY.7.20.002237
ORF1ab/nsp2618K618NaaGaaT44AY.740.000463
ORF1ab/nsp2618K618MaAgaTg44B.10.000037
ORF1ab/nsp2618K618TaAgaCg34B.10.000027
ORF1ab/nsp2618K618TaAGaCT14B.10.000009
ORF1ab/nsp2618K618NaaGaaT44B.1.1.4640.005891
ORF1ab/nsp2618K618NaaGaaT44B.1.110.30.002874
ORF1ab/nsp2618K618delAAG---44B.1.1770.000053
ORF1ab/nsp2618K618NaaGaaT44B.1.177.450.001525
ORF1ab/nsp2618K618QAagCag44B.1.20.000035
ORF1ab/nsp2618K618RaAgaGg44B.1.3510.000119
ORF1ab/nsp2618K618NaaGaaT44B.1.4270.000202
ORF1ab/nsp2618K618RaAgaGg44B.1.5610.001588
ORF1ab/nsp2618K618NaaGaaT44B.1.5960.000349
ORF1ab/nsp2618K618NaaGaaT44B.1.6210.000354
ORF1ab/nsp2618K618NaaGaaT33A.290.015957
ORF1ab/nsp2618K618PAAgCCg23All0
ORF1ab/nsp2618K618SaAGaGT23All0
ORF1ab/nsp2618K618SAAGTCC13All0
ORF1ab/nsp2618K618PAAGCCA13All0
ORF1ab/nsp2618K618NaaGaaT33AY.1080.003308
ORF1ab/nsp2618K618NaaGaaT33AY.1170.000254
ORF1ab/nsp2618K618RaAgaGg33AY.1180.000188
ORF1ab/nsp2618K618NaaGaaT33AY.230.000209
ORF1ab/nsp2618K618RaAgaGg33AY.270.000194
ORF1ab/nsp2618K618NaaGaaT33AY.4.20.000065
ORF1ab/nsp2618K618NaaGaaT33AY.460.000312
ORF1ab/nsp2618K618NaaGaaT33AY.470.000093
ORF1ab/nsp2618K618KaaGaaA33AY.540.000286
ORF1ab/nsp2618K618NaaGaaT33AY.590.001589
ORF1ab/nsp2618K618KaaGaaA33AY.60.000123
ORF1ab/nsp2618K618NaaGaaT33AY.920.000862
ORF1ab/nsp2618K618RaAgaGg33B.1.10.000054
ORF1ab/nsp2618K618NaaGaaT33B.1.1.2800.009259
ORF1ab/nsp2618K618delAAG---33B.1.1.330.001263
ORF1ab/nsp2618K618XAaGTaA13B.1.1.70.000001
ORF1ab/nsp2618K618XAagTag13B.1.1.70.000001
ORF1ab/nsp2618K618XAAGTGA13B.1.1.70.000001
ORF1ab/nsp2618K618EAagGag33B.1.20.000026
ORF1ab/nsp2618K618TaAgaCg33B.1.20.000026
ORF1ab/nsp2618K618TaAgaCg33B.1.2400.000647
ORF1ab/nsp2618K618KaaGaaA33B.1.2430.000209
ORF1ab/nsp2618K618NaaGaaT33B.1.2790.001541
ORF1ab/nsp2618K618EAagGag33B.1.3150.018182
ORF1ab/nsp2618K618NaaGaaT33B.1.3360.007317
ORF1ab/nsp2618K618NaaGaaT33B.1.360.000438
ORF1ab/nsp2618K618KaaGaaA33B.1.4110.011111
ORF1ab/nsp2618K618delAAG---33B.1.4290.000071
ORF1ab/nsp2618K618KaaGaaA33B.1.4290.000071
ORF1ab/nsp2618K618NaaGaaT33B.1.5760.00272
ORF1ab/nsp2618K618EAagGag33B.1.617.10.000387
ORF1ab/nsp2618K618KaaGaaA33B.1.617.10.000387
ORF1ab/nsp2618K618RaAgaGg33B.1.617.20.000011
ORF1ab/nsp2618K618TaAgaCg33B.1.617.20.000011
ORF1ab/nsp2618K618delAAG---33B.1.617.20.000011
ORF1ab/nsp2618K618NaaGaaT33B.1.6370.000219
ORF1ab/nsp2618K618RaAgaGg33P.10.000047
ORF1ab/nsp2618K618NaaGaaT33P.1.140.000143
ORF1ab/nsp2618K618del1Aag-ag220.111111
ORF1ab/nsp2618K618KaaGaaA22A0.000774
ORF1ab/nsp2618K618NaaGaaT12A.20.000662
ORF1ab/nsp2618K618NaaGaaC12A.20.000662
ORF1ab/nsp2618K618NaaGaaT22A.2.5.20.003145
ORF1ab/nsp2618K618IaAGaTT22All0
ORF1ab/nsp2618K618VAAGGTT12All0
ORF1ab/nsp2618K618VAAgGTg12All0
ORF1ab/nsp2618K618NaaGaaT22AY.1060.00067
ORF1ab/nsp2618K618NaaGaaT22AY.1110.000366
ORF1ab/nsp2618K618NaaGaaT22AY.1180.000125
ORF1ab/nsp2618K618TaAgaCg22AY.250.000012
ORF1ab/nsp2618K618NaaGaaT22AY.360.000296
ORF1ab/nsp2618K618RaAgaGg22AY.390.000049
ORF1ab/nsp2618K618NaaGaaT22AY.39.10.000079
ORF1ab/nsp2618K618delAAG---22AY.40.000003
ORF1ab/nsp2618K618NaaGaaT22AY.410.000588
ORF1ab/nsp2618K618NaaGaaT22AY.420.00008
ORF1ab/nsp2618K618MaAgaTg22AY.430.000009
ORF1ab/nsp2618K618EAagGag22AY.440.000012
ORF1ab/nsp2618K618KaaGaaA22AY.450.000243
ORF1ab/nsp2618K618NaaGaaT22AY.70.000392
ORF1ab/nsp2618K618TaAgaCg22AY.70.000392
ORF1ab/nsp2618K618NaaGaaT22AY.710.00095
ORF1ab/nsp2618K618RaAgaGg22AY.850.000854
ORF1ab/nsp2618K618NaaGaaT22AY.880.001768
ORF1ab/nsp2618K618KaaGaaA22B0.000256
ORF1ab/nsp2618K618LAAGCTT12B.10.000009
ORF1ab/nsp2618K618LAAgCTg12B.10.000009
ORF1ab/nsp2618K618QAagCag12B.1.10.000018
ORF1ab/nsp2618K618PAAgCCg12B.1.10.000018
ORF1ab/nsp2618K618TaAGaCA12B.1.10.000018
ORF1ab/nsp2618K618QAaGCaA12B.1.10.000018
ORF1ab/nsp2618K618PAAGCCA12B.1.10.000018
ORF1ab/nsp2618K618TaAgaCg12B.1.10.000018
ORF1ab/nsp2618K618NaaGaaT22B.1.1.2940.002532
ORF1ab/nsp2618K618delAAG---22B.1.1.3150.016949
ORF1ab/nsp2618K618NaaGaaT22B.1.1.3220.017544
ORF1ab/nsp2618K618NaaGaaT22B.1.1.3260.003521
ORF1ab/nsp2618K618delAAG---22B.1.1.3480.001592
ORF1ab/nsp2618K618NaaGaaT22B.1.1.3850.008929
ORF1ab/nsp2618K618TaAgaCg22B.1.1.3980.006452
ORF1ab/nsp2618K618KaaGaaA22B.1.1.4340.000697
ORF1ab/nsp2618K618NaaGaaT22B.1.1.440.004819
ORF1ab/nsp2618K618delAAG---22B.1.1.460.008734
ORF1ab/nsp2618K618KaaGaaA22B.1.1.5190.000079
ORF1ab/nsp2618K618KaaGaaA22B.1.1.630.000772
ORF1ab/nsp2618K618NaaGaaT12B.1.1.630.000386
ORF1ab/nsp2618K618NaaGaaC12B.1.1.630.000386
ORF1ab/nsp2618K618del2AAG--A12B.1.1.70.000001
ORF1ab/nsp2618K618del2AAG--T12B.1.1.70.000001
ORF1ab/nsp2618K618MaAgaTg22B.1.1770.000026
ORF1ab/nsp2618K618NaaGaaT22B.1.177.40.000422
ORF1ab/nsp2618K618NaaGaaT22B.1.177.570.000562
ORF1ab/nsp2618K618KaaGaaA22B.1.2400.000431
ORF1ab/nsp2618K618RaAgaGg22B.1.2430.000139
ORF1ab/nsp2618K618QAagCag22B.1.3510.000059
ORF1ab/nsp2618K618KaaGaaA22B.1.360.000292
ORF1ab/nsp2618K618delAAG---22B.1.4240.016129
ORF1ab/nsp2618K618RaAgaGg22B.1.4270.000101
ORF1ab/nsp2618K618delAAG---22B.1.5260.000047
ORF1ab/nsp2618K618KaaGaaA22B.1.5750.000607
ORF1ab/nsp2618K618MaAgaTg22B.1.617.20.000008
ORF1ab/nsp2618K618QAagCag22B.1.617.20.000008
ORF1ab/nsp2618K618EAagGag22B.1.617.20.000008
ORF1ab/nsp2618K618NaaGaaT22B.1.621.10.001012
ORF1ab/nsp2618K618TaAgaCg22C.160.002121
ORF1ab/nsp2618K618NaaGaaT22C.360.001821
ORF1ab/nsp2618K618delAAG---22N.60.014184
ORF1ab/nsp2618K618delAAG---22P.10.000032
ORF1ab/nsp2618K618TaAgaCg22P.1.150.000465
ORF1ab/nsp2618K618NaaGaaT22P.1.70.000639
ORF1ab/nsp2618K618NaaGaaT22Q.30.00029
ORF1ab/nsp2618K618NaaGaaT11A.2.40.003367
ORF1ab/nsp2618K618NaaGaaT11A.23.10.000704
ORF1ab/nsp2618K618MaAgaTg11A.30.002096
ORF1ab/nsp2618K618NaaGaaC11AD.20.000219
ORF1ab/nsp2618K618FAAGTTC11All0
ORF1ab/nsp2618K618WAAgTGg11All0
ORF1ab/nsp2618K618AAAgGCg11All0
ORF1ab/nsp2618K618RaAgaGg11AU.30.00211
ORF1ab/nsp2618K618KaaGaaA11AY.1000.000046
ORF1ab/nsp2618K618QAagCag11AY.1020.000027
ORF1ab/nsp2618K618KaaGaaA11AY.1020.000027
ORF1ab/nsp2618K618RaAgaGg11AY.1020.000027
ORF1ab/nsp2618K618delAAG---11AY.1030.000006
ORF1ab/nsp2618K618SaAGaGT11AY.1080.001103
ORF1ab/nsp2618K618delAAG---11AY.1080.001103
ORF1ab/nsp2618K618NaaGaaT11AY.1090.00074
ORF1ab/nsp2618K618RaAgaGg11AY.1190.000035
ORF1ab/nsp2618K618KaaGaaA11AY.1190.000035
ORF1ab/nsp2618K618KaaGaaA11AY.140.000088
ORF1ab/nsp2618K618del1aaGaa-11AY.160.00038
ORF1ab/nsp2618K618del2AAg--g11AY.190.00114
ORF1ab/nsp2618K618NaaGaaT11AY.190.00114
ORF1ab/nsp2618K618NaaGaaT11AY.20.000356
ORF1ab/nsp2618K618KaaGaaA11AY.230.00007
ORF1ab/nsp2618K618NaaGaaT11AY.240.000431
ORF1ab/nsp2618K618delAAG---11AY.250.000006
ORF1ab/nsp2618K618RaAgaGg11AY.260.000028
ORF1ab/nsp2618K618RaAgaGg11AY.290.000016
ORF1ab/nsp2618K618KaaGaaA11AY.290.000016
ORF1ab/nsp2618K618delAAG---11AY.30.00001
ORF1ab/nsp2618K618RaAgaGg11AY.30.00001
ORF1ab/nsp2618K618KaaGaaA11AY.330.000067
ORF1ab/nsp2618K618NaaGaaT11AY.340.000097
ORF1ab/nsp2618K618EAagGag11AY.340.000097
ORF1ab/nsp2618K618NaaGaaT11AY.350.000233
ORF1ab/nsp2618K618RaAgaGg11AY.360.000148
ORF1ab/nsp2618K618EAagGag11AY.4.20.000022
ORF1ab/nsp2618K618KaaGaaA11AY.4.20.000022
ORF1ab/nsp2618K618delAAG---11AY.400.000964
ORF1ab/nsp2618K618del1AAG-TT11AY.430.000004
ORF1ab/nsp2618K618RaAgaGg11AY.430.000004
ORF1ab/nsp2618K618RaAgaGg11AY.440.000006
ORF1ab/nsp2618K618XAagTag11AY.440.000006
ORF1ab/nsp2618K618MaAgaTg11AY.440.000006
ORF1ab/nsp2618K618MaAgaTg11AY.460.000104
ORF1ab/nsp2618K618NaaGaaT11AY.46.20.000635
ORF1ab/nsp2618K618KaaGaaA11AY.470.000031
ORF1ab/nsp2618K618TaAgaCg11AY.470.000031
ORF1ab/nsp2618K618EAagGag11AY.470.000031
ORF1ab/nsp2618K618NaaGaaT11AY.480.000465
ORF1ab/nsp2618K618NaaGaaT11AY.5.30.000337
ORF1ab/nsp2618K618NaaGaaT11AY.5.40.000277
ORF1ab/nsp2618K618NaaGaaT11AY.510.000909
ORF1ab/nsp2618K618SaAGaGT11AY.550.000917
ORF1ab/nsp2618K618NaaGaaT11AY.550.000917
ORF1ab/nsp2618K618NaaGaaT11AY.60.000041
ORF1ab/nsp2618K618delAAG---11AY.60.000041
ORF1ab/nsp2618K618QAagCag11AY.60.000041
ORF1ab/nsp2618K618MaAgaTg11AY.60.000041
ORF1ab/nsp2618K618RaAgaGg11AY.610.000105
ORF1ab/nsp2618K618NaaGaaT11AY.630.000387
ORF1ab/nsp2618K618NaaGaaT11AY.640.000595
ORF1ab/nsp2618K618delAAG---11AY.680.000274
ORF1ab/nsp2618K618KaaGaaA11AY.680.000274
ORF1ab/nsp2618K618MaAgaTg11AY.690.000187
ORF1ab/nsp2618K618delAAG---11AY.730.000665
ORF1ab/nsp2618K618MaAgaTg11AY.740.000116
ORF1ab/nsp2618K618KaaGaaA11AY.750.000056
ORF1ab/nsp2618K618QAagCag11AY.750.000056
ORF1ab/nsp2618K618NaaGaaT11AY.75.10.00018
ORF1ab/nsp2618K618EAagGag11AY.75.10.00018
ORF1ab/nsp2618K618MaAgaTg11AY.830.001724
ORF1ab/nsp2618K618FAAGTTC11AY.850.000427
ORF1ab/nsp2618K618SAAGTCC11AY.850.000427
ORF1ab/nsp2618K618NaaGaaT11AY.9.10.000084
ORF1ab/nsp2618K618KaaGaaA11AY.9.10.000084
ORF1ab/nsp2618K618NaaGaaT11AY.930.000273
ORF1ab/nsp2618K618KaaGaaA11AY.930.000273
ORF1ab/nsp2618K618delAAG---11AY.98.10.000048
ORF1ab/nsp2618K618MaAgaTg11AY.99.20.000092
ORF1ab/nsp2618K618NaaGaaT11AY.99.20.000092
ORF1ab/nsp2618K618NaaGaaT11B0.000128
ORF1ab/nsp2618K618del2AAg--g11B.10.000009
ORF1ab/nsp2618K618IaAGaTT11B.10.000009
ORF1ab/nsp2618K618NaaGaaT11B.1.1.10.000327
ORF1ab/nsp2618K618NaaGaaT11B.1.1.100.001115
ORF1ab/nsp2618K618NaaGaaT11B.1.1.1290.009174
ORF1ab/nsp2618K618NaaGaaT11B.1.1.1360.021277
ORF1ab/nsp2618K618delAAG---11B.1.1.1390.022727
ORF1ab/nsp2618K618KaaGaaA11B.1.1.1700.001247
ORF1ab/nsp2618K618NaaGaaT11B.1.1.1860.003436
ORF1ab/nsp2618K618NaaGaaT11B.1.1.1980.001468
ORF1ab/nsp2618K618MaAgaTg11B.1.1.2140.000055
ORF1ab/nsp2618K618NaaGaaT11B.1.1.2140.000055
ORF1ab/nsp2618K618NaaGaaT11B.1.1.2160.00089
ORF1ab/nsp2618K618KaaGaaA11B.1.1.2220.000204
ORF1ab/nsp2618K618NaaGaaT11B.1.1.2540.011236
ORF1ab/nsp2618K618LAAGCTT11B.1.1.2580.003257
ORF1ab/nsp2618K618NaaGaaT11B.1.1.280.000311
ORF1ab/nsp2618K618QAagCag11B.1.1.2890.002083
ORF1ab/nsp2618K618KaaGaaA11B.1.1.3060.000438
ORF1ab/nsp2618K618RaAgaGg11B.1.1.3180.000302
ORF1ab/nsp2618K618NaaGaaT11B.1.1.330.000421
ORF1ab/nsp2618K618NaaGaaT11B.1.1.3530.020833
ORF1ab/nsp2618K618KaaGaaA11B.1.1.3640.066667
ORF1ab/nsp2618K618NaaGaaT11B.1.1.3720.000689
ORF1ab/nsp2618K618KaaGaaA11B.1.1.4020.011111
ORF1ab/nsp2618K618NaaGaaT11B.1.1.4090.002833
ORF1ab/nsp2618K618delAAG---11B.1.1.4160.000905
ORF1ab/nsp2618K618NaaGaaT11B.1.1.4200.001006
ORF1ab/nsp2618K618NaaGaaT11B.1.1.4320.001266
ORF1ab/nsp2618K618NaaGaaT11B.1.1.4340.000349
ORF1ab/nsp2618K618delAAG---11B.1.1.4480.002033
ORF1ab/nsp2618K618NaaGaaT11B.1.1.500.000679
ORF1ab/nsp2618K618delAAG---11B.1.1.5170.006803
ORF1ab/nsp2618K618NaaGaaT11B.1.1.5180.006329
ORF1ab/nsp2618K618NaaGaaT11B.1.1.5250.005464
ORF1ab/nsp2618K618NaaGaaT11B.1.1.5260.003546
ORF1ab/nsp2618K618LAAgCTg11B.1.1.70.000001
ORF1ab/nsp2618K618EAagGag11B.1.1.70.000001
ORF1ab/nsp2618K618VAAgGTg11B.1.1.70.000001
ORF1ab/nsp2618K618WAAgTGg11B.1.1.70.000001
ORF1ab/nsp2618K618delAAG---11B.1.1.700.000341
ORF1ab/nsp2618K618RaAgaGg11B.1.1110.001175
ORF1ab/nsp2618K618delAAG---11B.1.1400.018868
ORF1ab/nsp2618K618TaAgaCg11B.1.1570.002985
ORF1ab/nsp2618K618delAAG---11B.1.1600.000031
ORF1ab/nsp2618K618NaaGaaT11B.1.1600.000031
ORF1ab/nsp2618K618NaaGaaT11B.1.177.110.001698
ORF1ab/nsp2618K618RaAgaGg11B.1.177.120.000152
ORF1ab/nsp2618K618delAAG---11B.1.177.150.000631
ORF1ab/nsp2618K618RaAgaGg11B.1.177.190.001431
ORF1ab/nsp2618K618NaaGaaT11B.1.177.580.001332
ORF1ab/nsp2618K618delAAG---11B.1.177.620.001192
ORF1ab/nsp2618K618NaaGaaC11B.1.177.650.000665
ORF1ab/nsp2618K618NaaGaaT11B.1.177.770.000726
ORF1ab/nsp2618K618NaaGaaT11B.1.177.810.000189
ORF1ab/nsp2618K618KaaGaaA11B.1.177.870.000728
ORF1ab/nsp2618K618del1aAGaG-11B.1.20.000009
ORF1ab/nsp2618K618delAAG---11B.1.20.000009
ORF1ab/nsp2618K618KaaGaaA11B.1.214.20.0006
ORF1ab/nsp2618K618NaaGaaT11B.1.214.30.007143
ORF1ab/nsp2618K618EAagGag11B.1.2340.000132
ORF1ab/nsp2618K618NaaGaaT11B.1.2340.000132
ORF1ab/nsp2618K618NaaGaaT11B.1.2400.000216
ORF1ab/nsp2618K618MaAgaTg11B.1.2430.00007
ORF1ab/nsp2618K618delAAG---11B.1.2580.000067
ORF1ab/nsp2618K618NaaGaaT11B.1.30.002618
ORF1ab/nsp2618K618KaaGaaA11B.1.3110.000275
ORF1ab/nsp2618K618NaaGaaT11B.1.3400.004292
ORF1ab/nsp2618K618delAAG---11B.1.3510.00003
ORF1ab/nsp2618K618MaAgaTg11B.1.3510.00003
ORF1ab/nsp2618K618RaAgaGg11B.1.360.000146
ORF1ab/nsp2618K618NaaGaaT11B.1.36.170.000494
ORF1ab/nsp2618K618NaaGaaT11B.1.36.290.000517
ORF1ab/nsp2618K618KaaGaaA11B.1.36.360.000602
ORF1ab/nsp2618K618KaaGaaA11B.1.36.80.001
ORF1ab/nsp2618K618NaaGaaT11B.1.3610.001289
ORF1ab/nsp2618K618NaaGaaT11B.1.3620.001541
ORF1ab/nsp2618K618NaaGaaT11B.1.3690.000285
ORF1ab/nsp2618K618delAAG---11B.1.4040.001302
ORF1ab/nsp2618K618KaaGaaA11B.1.416.10.001563
ORF1ab/nsp2618K618delAAG---11B.1.4270.00005
ORF1ab/nsp2618K618RaAgaGg11B.1.4290.000024
ORF1ab/nsp2618K618NaaGaaT11B.1.438.10.000107
ORF1ab/nsp2618K618NaaGaaT11B.1.4530.003236
ORF1ab/nsp2618K618NaaGaaT11B.1.4590.004082
ORF1ab/nsp2618K618PAAgCCg11B.1.466.20.000391
ORF1ab/nsp2618K618NaaGaaT11B.1.466.20.000391
ORF1ab/nsp2618K618RaAgaGg11B.1.466.20.000391
ORF1ab/nsp2618K618NaaGaaT11B.1.4700.001404
ORF1ab/nsp2618K618QAagCag11B.1.4970.000315
ORF1ab/nsp2618K618AAAgGCg11B.1.4970.000315
ORF1ab/nsp2618K618NaaGaaT11B.1.4970.000315
ORF1ab/nsp2618K618NaaGaaT11B.1.4990.00105
ORF1ab/nsp2618K618KaaGaaA11B.1.5260.000024
ORF1ab/nsp2618K618KaaGaaA11B.1.5560.007519
ORF1ab/nsp2618K618delAAG---11B.1.5610.000397
ORF1ab/nsp2618K618MaAgaTg11B.1.5610.000397
ORF1ab/nsp2618K618KaaGaaA11B.1.5650.00081
ORF1ab/nsp2618K618NaaGaaT11B.1.5820.000491
ORF1ab/nsp2618K618RaAgaGg11B.1.5820.000491
ORF1ab/nsp2618K618QAagCag11B.1.5950.000261
ORF1ab/nsp2618K618KaaGaaA11B.1.5960.000087
ORF1ab/nsp2618K618NaaGaaT11B.1.5970.00463
ORF1ab/nsp2618K618NaaGaaT11B.1.6000.005848
ORF1ab/nsp2618K618NaaGaaC11B.1.6090.000479
ORF1ab/nsp2618K618delAAG---11B.1.617.10.000129
ORF1ab/nsp2618K618TaAGaCT11B.1.617.10.000129
ORF1ab/nsp2618K618XAaGTaA11B.1.617.10.000129
ORF1ab/nsp2618K618IaAGaTT11B.1.617.10.000129
ORF1ab/nsp2618K618VAAGGTT11B.1.617.20.000004
ORF1ab/nsp2618K618RaAgaGg11B.1.6180.004032
ORF1ab/nsp2618K618RaAgaGg11B.1.6210.000089
ORF1ab/nsp2618K618EAagGag11B.1.6210.000089
ORF1ab/nsp2618K618delAAG---11B.1.6210.000089
ORF1ab/nsp2618K618delAAG---11B.1.621.10.000506
ORF1ab/nsp2618K618NaaGaaT11B.1.6280.000352
ORF1ab/nsp2618K618RaAgaGg11B.1.6370.000073
ORF1ab/nsp2618K618KaaGaaA11B.1.6370.000073
ORF1ab/nsp2618K618NaaGaaT11B.1.80.001972
ORF1ab/nsp2618K618NaaGaaT11B.310.003731
ORF1ab/nsp2618K618KaaGaaA11B.550.00295
ORF1ab/nsp2618K618delAAG---11B.570.015152
ORF1ab/nsp2618K618NaaGaaT11B.570.015152
ORF1ab/nsp2618K618NaaGaaT11B.60.00091
ORF1ab/nsp2618K618KaaGaaA11C.10.002392
ORF1ab/nsp2618K618NaaGaaT11C.160.00106
ORF1ab/nsp2618K618KaaGaaA11C.360.000911
ORF1ab/nsp2618K618RaAgaGg11C.370.000116
ORF1ab/nsp2618K618KaaGaaA11D.20.000075
ORF1ab/nsp2618K618EAagGag11D.20.000075
ORF1ab/nsp2618K618QAagCag11P.10.000016
ORF1ab/nsp2618K618TaAgaCg11P.10.000016
ORF1ab/nsp2618K618MaAgaTg11P.1.100.000269
ORF1ab/nsp2618K618KaaGaaA11P.1.100.000269
ORF1ab/nsp2618K618NaaGaaT11P.1.10.20.041667
ORF1ab/nsp2618K618NaaGaaT11P.1.120.000484
ORF1ab/nsp2618K618KaaGaaA11P.1.140.000048
ORF1ab/nsp2618K618MaAgaTg11P.1.150.000232
ORF1ab/nsp2618K618delAAG---11P.1.150.000232
ORF1ab/nsp2618K618NaaGaaT11P.1.160.000374
ORF1ab/nsp2618K618KaaGaaA11P.30.001595
ORF1ab/nsp2618K618NaaGaaT11Q.10.000126
ORF1ab/nsp2618K618KaaGaaA11Q.40.000455
ORF1ab/nsp2618K618delAAG---11Q.80.000165
ORF1ab/nsp2618K618NaaGaaT11R.10.00009
ORF1ab/nsp2618K618delAAG---11R.10.00009
ORF1ab/nsp2618K618delAAG---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.