CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 611 & Codon = ctT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2611L611LL791LsynctCctT175616330.9299542636-2638

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2611L611LctCctT16331756All0.000312
ORF1ab/nsp2611L611LctCctT263263AY.390.006499
ORF1ab/nsp2611L611LctCctT216216AY.290.003407
ORF1ab/nsp2611L611LctCctT181194B.1.1.70.000162
ORF1ab/nsp2611L611LctCctT154154B.1.1.591
ORF1ab/nsp2611L611LctCctT8992AY.40.000139
ORF1ab/nsp2611L611LctCctT6174AY.50.00126
ORF1ab/nsp2611L611LctCctT7474P.10.001166
ORF1ab/nsp2611L611LctCctT6971B.1.617.20.00026
ORF1ab/nsp2611L611LctCctT4141B.1.1770.00054
ORF1ab/nsp2611L611LctCctT3738AY.98.10.001792
ORF1ab/nsp2611L611LctCctT3435AY.1030.000211
ORF1ab/nsp2611L611LctCctT2631B.10.000238
ORF1ab/nsp2611L611LctCctT3031B.1.10.000544
ORF1ab/nsp2611L611LctCctT2730AY.430.00012
ORF1ab/nsp2611L611LctCctT2628B.1.20.000229
ORF1ab/nsp2611L611LctCctT1820AY.440.00011
ORF1ab/nsp2611L611LctCctT1519AY.250.00009
ORF1ab/nsp2611L611LctCctT815B.1.2210.000568
ORF1ab/nsp2611L611LctCctT113B.1.2430.00007
ORF1ab/nsp2611L611LctCctT1212B.1.5160.023483
ORF1ab/nsp2611L611LctCctT1011AY.1190.000353
ORF1ab/nsp2611L611LctCctT1111B.1.1.1860.037801
ORF1ab/nsp2611L611LctCctT1010B.1.177.240.012953
ORF1ab/nsp2611L611LctCctT210B.1.2580.000133
ORF1ab/nsp2611L611LctCctT99AY.370.002845
ORF1ab/nsp2611L611LctCctT99B.1.5960.000784
ORF1ab/nsp2611L611LctCctT88AY.230.000558
ORF1ab/nsp2611L611LctCctT77AY.1000.000322
ORF1ab/nsp2611L611LctCctT77AY.330.000467
ORF1ab/nsp2611L611LctCctT77B.1.1.5190.000278
ORF1ab/nsp2611L611LctCctT67B.1.3510.000178
ORF1ab/nsp2611L611LctCctT66AY.4.20.00013
ORF1ab/nsp2611L611LctCctT56AY.590.002648
ORF1ab/nsp2611L611LctCctT66B.1.1.280.001867
ORF1ab/nsp2611L611LctCctT66B.1.258.190.042553
ORF1ab/nsp2611L611LctCctT56B.1.4290.000118
ORF1ab/nsp2611L611LctCctT55AY.1020.000133
ORF1ab/nsp2611L611LctCctT55AY.200.000194
ORF1ab/nsp2611L611LctCctT55AY.340.000485
ORF1ab/nsp2611L611LctCctT55B.1.177.210.000382
ORF1ab/nsp2611L611LctCctT55B.1.258.170.00052
ORF1ab/nsp2611L611LctCctT55B.1.5260.000118
ORF1ab/nsp2611L611LctCctT55P.1.170.000809
ORF1ab/nsp2611L611LctCctT44AY.30.00004
ORF1ab/nsp2611L611LctCctT44B.1.1.1410.008048
ORF1ab/nsp2611L611LctCctT44B.1.1.2840.00043
ORF1ab/nsp2611L611LctCctT44B.1.3690.001141
ORF1ab/nsp2611L611LctCctT13A0.000387
ORF1ab/nsp2611L611LctCctT33AY.1200.000112
ORF1ab/nsp2611L611LctCctT23AY.420.00008
ORF1ab/nsp2611L611LctCctT33AY.46.60.000217
ORF1ab/nsp2611L611LctCctT23AY.9.20.000073
ORF1ab/nsp2611L611LctCctT33AY.99.20.000276
ORF1ab/nsp2611L611LctCctT23B.1.1600.000062
ORF1ab/nsp2611L611LctCctT33B.1.3110.000824
ORF1ab/nsp2611L611LctCctT33C.350.002322
ORF1ab/nsp2611L611LctCctT22AY.270.000129
ORF1ab/nsp2611L611LctCctT22AY.4.2.10.000298
ORF1ab/nsp2611L611LctCctT12AY.450.000122
ORF1ab/nsp2611L611LctCctT22AY.470.000062
ORF1ab/nsp2611L611LctCctT22AY.60.000082
ORF1ab/nsp2611L611LctCctT22AY.810.003984
ORF1ab/nsp2611L611LctCctT22AY.880.001768
ORF1ab/nsp2611L611LctCctT12AY.90.000068
ORF1ab/nsp2611L611LctCctT22B.1.1.500.001358
ORF1ab/nsp2611L611LctCctT22B.1.1390.001466
ORF1ab/nsp2611L611LctCctT22B.1.5250.000226
ORF1ab/nsp2611L611LctCctT22B.1.6090.000959
ORF1ab/nsp2611L611LctCctT22B.1.6200.001892
ORF1ab/nsp2611L611LctCctT22R.10.00018
ORF1ab/nsp2611L611LctCctT11AY.1100.000113
ORF1ab/nsp2611L611LctCctT11AY.1130.000142
ORF1ab/nsp2611L611LctCctT11AY.1150.005208
ORF1ab/nsp2611L611LctCctT11AY.130.000161
ORF1ab/nsp2611L611LctCctT11AY.140.000088
ORF1ab/nsp2611L611LctCctT11AY.16.10.00047
ORF1ab/nsp2611L611LctCctT11AY.3.10.000085
ORF1ab/nsp2611L611LctCctT11AY.360.000148
ORF1ab/nsp2611L611LctCctT11AY.4.10.000737
ORF1ab/nsp2611L611LctCctT11AY.400.000964
ORF1ab/nsp2611L611LctCctT11AY.610.000105
ORF1ab/nsp2611L611LctCctT11AY.75.10.00018
ORF1ab/nsp2611L611LctCctT11AY.790.001211
ORF1ab/nsp2611L611LctCctT11AY.900.000684
ORF1ab/nsp2611L611LctCctT11AY.930.000273
ORF1ab/nsp2611L611LctCctT11AY.980.000079
ORF1ab/nsp2611L611LctCctT11B.1.1.100.001115
ORF1ab/nsp2611L611LctCctT11B.1.1.1660.033333
ORF1ab/nsp2611L611LctCctT11B.1.1.3170.000412
ORF1ab/nsp2611L611LctCctT11B.1.1.330.000421
ORF1ab/nsp2611L611LctCctT11B.1.1.3890.006061
ORF1ab/nsp2611L611LctCctT11B.1.1.4200.001006
ORF1ab/nsp2611L611LctCctT11B.1.177.570.000281
ORF1ab/nsp2611L611LctCctT11B.1.177.820.000477
ORF1ab/nsp2611L611LctCctT11B.1.2010.005682
ORF1ab/nsp2611L611LctCctT11B.1.2340.000132
ORF1ab/nsp2611L611LctCctT11B.1.258.110.000396
ORF1ab/nsp2611L611LctCctT11B.1.351.20.000303
ORF1ab/nsp2611L611LctCctT11B.1.36.180.00042
ORF1ab/nsp2611L611LctCctT11B.1.4270.00005
ORF1ab/nsp2611L611LctCctT11B.1.4690.00361
ORF1ab/nsp2611L611LctCctT11B.1.4990.00105
ORF1ab/nsp2611L611LctCctT11B.1.5640.000426
ORF1ab/nsp2611L611LctCctT11B.40.002208
ORF1ab/nsp2611L611LctCctT11C.300.001727
ORF1ab/nsp2611L611LctCctT11C.370.000116
ORF1ab/nsp2611L611LctCctT11P.1.160.000374
ORF1ab/nsp2611L611LctCctT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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