CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 611 | L611L | L791L | syn | ctC | ctT | 1756 | 1633 | 0.929954 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611L | L791L | syn | ctC | ctA | 1756 | 111 | 0.0632118 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611L | L791L | syn | ctC | ctG | 1756 | 12 | 0.00683371 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611del | L791del | del | CTC | --- | 143 | 143 | 1 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611F | L791F | nonsyn | Ctc | Ttc | 23 | 23 | 1 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611I | L791I | nonsyn | Ctc | Atc | 21 | 21 | 1 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611P | L791P | nonsyn | cTc | cCc | 11 | 7 | 0.636364 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611P | L791P | nonsyn | cTC | cCT | 11 | 2 | 0.181818 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611P | L791P | nonsyn | cTC | cCG | 11 | 1 | 0.0909091 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611P | L791P | nonsyn | cTC | cCA | 11 | 1 | 0.0909091 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611V | L791V | nonsyn | Ctc | Gtc | 5 | 5 | 1 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611H | L791H | nonsyn | cTc | cAc | 5 | 3 | 0.6 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611H | L791H | nonsyn | cTC | cAT | 5 | 2 | 0.4 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611R | L791R | nonsyn | cTc | cGc | 3 | 2 | 0.666667 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611R | L791R | nonsyn | cTC | cGG | 3 | 1 | 0.333333 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611del1 | L791del1 | del | CtC | At- | 3 | 1 | 0.333333 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611del1 | L791del1 | del | CTC | -CT | 3 | 1 | 0.333333 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611del1 | L791del1 | del | ctC | ct- | 3 | 1 | 0.333333 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611X | L791X | nonsyn | CTC | TGA | 1 | 1 | 1 | 2636-2638 |
ORF1ab/nsp2 | 611 | L611N | L791N | nonsyn | CTc | AAc | 1 | 1 | 1 | 2636-2638 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1633 | 1756 | All | 0.000312 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 111 | 1756 | All | 0.000021 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctG | 12 | 1756 | All | 0.000002 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 263 | 263 | AY.39 | 0.006499 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 216 | 216 | AY.29 | 0.003407 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 181 | 194 | B.1.1.7 | 0.000162 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 13 | 194 | B.1.1.7 | 0.000012 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 154 | 154 | B.1.1.59 | 1 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 143 | 143 | All | 0.000027 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 89 | 92 | AY.4 | 0.000139 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 3 | 92 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 61 | 74 | AY.5 | 0.00126 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 13 | 74 | AY.5 | 0.000268 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 74 | 74 | P.1 | 0.001166 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 69 | 71 | B.1.617.2 | 0.00026 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 2 | 71 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 41 | 41 | B.1.177 | 0.00054 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 37 | 38 | AY.98.1 | 0.001792 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 38 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 34 | 35 | AY.103 | 0.000211 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 35 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 34 | 34 | B.1.1.7 | 0.00003 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 26 | 31 | B.1 | 0.000238 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 5 | 31 | B.1 | 0.000046 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 30 | 31 | B.1.1 | 0.000544 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 31 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 27 | 30 | AY.43 | 0.00012 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 3 | 30 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 26 | 28 | B.1.2 | 0.000229 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 2 | 28 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 23 | 23 | All | 0.000004 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 21 | 21 | All | 0.000004 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 18 | 20 | AY.44 | 0.00011 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 2 | 20 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 15 | 19 | AY.25 | 0.00009 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 4 | 19 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 8 | 15 | B.1.221 | 0.000568 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctG | 7 | 15 | B.1.221 | 0.000497 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 12 | 13 | B.1.243 | 0.000835 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 13 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 12 | 12 | B.1.516 | 0.023483 |
ORF1ab/nsp2 | 611 | L611P | cTc | cCc | 7 | 11 | All | 0.000001 |
ORF1ab/nsp2 | 611 | L611P | cTC | cCT | 2 | 11 | All | 0 |
ORF1ab/nsp2 | 611 | L611P | cTC | cCA | 1 | 11 | All | 0 |
ORF1ab/nsp2 | 611 | L611P | cTC | cCG | 1 | 11 | All | 0 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 10 | 11 | AY.119 | 0.000353 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 11 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 11 | 11 | AY.39.1 | 0.000436 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 11 | 11 | B.1.1.186 | 0.037801 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 10 | 10 | B.1.177.24 | 0.012953 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 8 | 10 | B.1.258 | 0.000532 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 10 | B.1.258 | 0.000133 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 9 | 9 | AY.37 | 0.002845 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 6 | 7 | B.1.351 | 0.000178 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 7 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 5 | 6 | AY.59 | 0.002648 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 6 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 6 | 6 | B.1.258.19 | 0.042553 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 5 | 6 | B.1.429 | 0.000118 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 6 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 611 | L611V | Ctc | Gtc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 611 | L611H | cTc | cAc | 3 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 611 | L611H | cTC | cAT | 2 | 5 | All | 0 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 5 | 5 | B.1.36.25 | 0.011038 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 4 | 4 | B.1.1.141 | 0.008048 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 2 | 3 | A | 0.000774 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 3 | A | 0.000387 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp2 | 611 | L611R | cTc | cGc | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 611 | L611del1 | ctC | ct- | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 611 | L611del1 | CTC | -CT | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 611 | L611del1 | CtC | At- | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 611 | L611R | cTC | cGG | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 3 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 3 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 3 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 3 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 611 | L611V | Ctc | Gtc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 3 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 3 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctG | 1 | 2 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 2 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctG | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | AY.81 | 0.003984 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctG | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 2 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 2 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 611 | L611P | cTc | cCc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 611 | L611P | cTC | cCA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 611 | L611P | cTc | cCc | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp2 | 611 | L611P | cTc | cCc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 611 | L611H | cTc | cAc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp2 | 611 | L611N | CTc | AAc | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 611 | L611X | CTC | TGA | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 611 | L611P | cTc | cCc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 611 | L611P | cTC | cCG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 611 | L611P | cTc | cCc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 611 | L611H | cTC | cAT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 611 | L611P | cTC | cCT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 611 | L611R | cTc | cGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 611 | L611H | cTc | cAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.1.166 | 0.033333 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp2 | 611 | L611H | cTc | cAc | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp2 | 611 | L611N | CTc | AAc | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp2 | 611 | L611del1 | CTC | -CT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 611 | L611R | cTc | cGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 611 | L611P | cTc | cCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 611 | L611del1 | CtC | At- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 611 | L611R | cTC | cGG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 611 | L611P | cTC | cCT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp2 | 611 | L611V | Ctc | Gtc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp2 | 611 | L611V | Ctc | Gtc | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 611 | L611del1 | ctC | ct- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 611 | L611I | Ctc | Atc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctA | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 611 | L611H | cTC | cAT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 611 | L611X | CTC | TGA | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 611 | L611L | ctC | ctT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 611 | L611del | CTC | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp2 | 611 | L611F | Ctc | Ttc | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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