CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 61

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp261Y61YY241YsyntaCtaT5565561986-988
ORF1ab/nsp261Y61CY241CnonsyntActGc4004001986-988
ORF1ab/nsp261Y61HY241HnonsynTacCac66661986-988
ORF1ab/nsp261Y61delY241deldelTAC---28281986-988
ORF1ab/nsp261Y61FY241FnonsyntActTc12121986-988
ORF1ab/nsp261Y61NY241NnonsynTacAac661986-988
ORF1ab/nsp261Y61XY241XnonsyntaCtaA540.8986-988
ORF1ab/nsp261Y61XY241XnonsyntaCtaG510.2986-988
ORF1ab/nsp261Y61DY241DnonsynTacGac221986-988
ORF1ab/nsp261Y61VY241VnonsynTAcGTc210.5986-988
ORF1ab/nsp261Y61VY241VnonsynTACGTA210.5986-988
ORF1ab/nsp261Y61LY241LnonsyntACtTA111986-988
ORF1ab/nsp261Y61EY241EnonsynTaCGaA111986-988
ORF1ab/nsp261Y61del2Y241del2deltACt--111986-988
ORF1ab/nsp261Y61del1Y241del1delTac-ac111986-988
ORF1ab/nsp261Y61IY241InonsynTACATT111986-988
ORF1ab/nsp261Y61QY241QnonsynTaCCaA111986-988
ORF1ab/nsp261Y61RY241RnonsynTACCGT111986-988
ORF1ab/nsp261Y61SY241SnonsyntActCc111986-988

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp261Y61YtaCtaT556556All0.000106
ORF1ab/nsp261Y61CtActGc400400All0.000077
ORF1ab/nsp261Y61CtActGc321321AY.40.0005
ORF1ab/nsp261Y61YtaCtaT9999B.1.1.70.000089
ORF1ab/nsp261Y61YtaCtaT7272B.340.986301
ORF1ab/nsp261Y61HTacCac6666All0.000013
ORF1ab/nsp261Y61YtaCtaT5151AY.40.000079
ORF1ab/nsp261Y61delTAC---2828All0.000005
ORF1ab/nsp261Y61YtaCtaT2424B.1.10.000435
ORF1ab/nsp261Y61YtaCtaT2424B.1.617.20.00009
ORF1ab/nsp261Y61YtaCtaT2222AY.1190.000777
ORF1ab/nsp261Y61YtaCtaT1919AY.30.000189
ORF1ab/nsp261Y61CtActGc1515B.1.20.000132
ORF1ab/nsp261Y61YtaCtaT1414AY.430.000062
ORF1ab/nsp261Y61FtActTc1212All0.000002
ORF1ab/nsp261Y61YtaCtaT1212AY.610.001257
ORF1ab/nsp261Y61CtActGc1212B.1.1.70.000011
ORF1ab/nsp261Y61YtaCtaT1111AY.250.000066
ORF1ab/nsp261Y61YtaCtaT1111P.10.000173
ORF1ab/nsp261Y61YtaCtaT1010B.1.1.3970.022523
ORF1ab/nsp261Y61HTacCac1010B.1.258.110.003964
ORF1ab/nsp261Y61YtaCtaT99AY.440.000055
ORF1ab/nsp261Y61YtaCtaT88B.1.20.00007
ORF1ab/nsp261Y61HTacCac88B.1.617.20.00003
ORF1ab/nsp261Y61YtaCtaT77AY.1030.000043
ORF1ab/nsp261Y61FtActTc77B.1.1.70.000006
ORF1ab/nsp261Y61YtaCtaT77B.1.2580.000466
ORF1ab/nsp261Y61NTacAac66All0.000001
ORF1ab/nsp261Y61YtaCtaT66AY.230.000418
ORF1ab/nsp261Y61YtaCtaT66AY.390.000148
ORF1ab/nsp261Y61HTacCac66AY.40.000009
ORF1ab/nsp261Y61YtaCtaT66B.1.177.540.003639
ORF1ab/nsp261Y61XtaCtaA45All0.000001
ORF1ab/nsp261Y61XtaCtaG15All0
ORF1ab/nsp261Y61HTacCac55AY.1030.000031
ORF1ab/nsp261Y61YtaCtaT55AY.290.000079
ORF1ab/nsp261Y61YtaCtaT55AY.4.20.000108
ORF1ab/nsp261Y61CtActGc55AY.440.00003
ORF1ab/nsp261Y61CtActGc55AY.910.003652
ORF1ab/nsp261Y61CtActGc55B.1.1.1170.048544
ORF1ab/nsp261Y61delTAC---55B.1.1.330.002104
ORF1ab/nsp261Y61delTAC---55B.1.1.70.000004
ORF1ab/nsp261Y61HTacCac55B.1.1.70.000004
ORF1ab/nsp261Y61HTacCac55B.1.1600.000156
ORF1ab/nsp261Y61YtaCtaT55B.1.5760.004533
ORF1ab/nsp261Y61CtActGc55B.1.617.20.000019
ORF1ab/nsp261Y61YtaCtaT44AY.1000.000184
ORF1ab/nsp261Y61YtaCtaT44AY.1160.001147
ORF1ab/nsp261Y61YtaCtaT44AY.75.10.000721
ORF1ab/nsp261Y61HTacCac44B.10.000037
ORF1ab/nsp261Y61delTAC---44B.1.1.3480.003185
ORF1ab/nsp261Y61YtaCtaT44B.1.3510.000119
ORF1ab/nsp261Y61YtaCtaT44B.1.5260.000094
ORF1ab/nsp261Y61CtActGc44P.10.000063
ORF1ab/nsp261Y61YtaCtaT44P.1.40.003906
ORF1ab/nsp261Y61YtaCtaT33AY.1130.000427
ORF1ab/nsp261Y61YtaCtaT33AY.240.001293
ORF1ab/nsp261Y61CtActGc33AY.260.000085
ORF1ab/nsp261Y61YtaCtaT33AY.270.000194
ORF1ab/nsp261Y61CtActGc33AY.390.000074
ORF1ab/nsp261Y61HTacCac33AY.39.10.000119
ORF1ab/nsp261Y61YtaCtaT33AY.5.40.00083
ORF1ab/nsp261Y61YtaCtaT33AY.550.002752
ORF1ab/nsp261Y61YtaCtaT33AY.60.000123
ORF1ab/nsp261Y61HTacCac33AY.70.000588
ORF1ab/nsp261Y61YtaCtaT33B0.000383
ORF1ab/nsp261Y61NTacAac33B.10.000027
ORF1ab/nsp261Y61YtaCtaT33B.10.000027
ORF1ab/nsp261Y61XtaCtaA33B.1.10.000054
ORF1ab/nsp261Y61YtaCtaT33B.1.1770.00004
ORF1ab/nsp261Y61YtaCtaT33B.1.2430.000209
ORF1ab/nsp261Y61YtaCtaT33B.1.36.210.006479
ORF1ab/nsp261Y61HTacCac33B.1.4290.000071
ORF1ab/nsp261Y61CtActGc33B.1.4290.000071
ORF1ab/nsp261Y61YtaCtaT33C.370.000348
ORF1ab/nsp261Y61YtaCtaT22A.20.001324
ORF1ab/nsp261Y61DTacGac22All0
ORF1ab/nsp261Y61VTACGTA12All0
ORF1ab/nsp261Y61VTAcGTc12All0
ORF1ab/nsp261Y61YtaCtaT22AY.1020.000053
ORF1ab/nsp261Y61CtActGc22AY.1030.000012
ORF1ab/nsp261Y61HTacCac22AY.1190.000071
ORF1ab/nsp261Y61YtaCtaT22AY.130.000322
ORF1ab/nsp261Y61YtaCtaT22AY.330.000134
ORF1ab/nsp261Y61CtActGc22AY.430.000009
ORF1ab/nsp261Y61YtaCtaT22AY.7.10.000225
ORF1ab/nsp261Y61YtaCtaT22AY.750.000112
ORF1ab/nsp261Y61YtaCtaT22AY.90.000135
ORF1ab/nsp261Y61YtaCtaT22AY.940.000885
ORF1ab/nsp261Y61CtActGc22AY.980.000158
ORF1ab/nsp261Y61CtActGc22B.10.000018
ORF1ab/nsp261Y61VTACGTA12B.1.10.000018
ORF1ab/nsp261Y61VTAcGTc12B.1.10.000018
ORF1ab/nsp261Y61YtaCtaT22B.1.1.2840.000215
ORF1ab/nsp261Y61YtaCtaT22B.1.1.390.001019
ORF1ab/nsp261Y61YtaCtaT22B.1.1.5190.000079
ORF1ab/nsp261Y61HTacCac22B.1.3510.000059
ORF1ab/nsp261Y61YtaCtaT22B.1.3620.003082
ORF1ab/nsp261Y61CtActGc22B.1.6370.000146
ORF1ab/nsp261Y61delTAC---22N.40.008511
ORF1ab/nsp261Y61delTAC---22N.60.014184
ORF1ab/nsp261Y61YtaCtaT22P.1.140.000096
ORF1ab/nsp261Y61delTAC---22P.20.000373
ORF1ab/nsp261Y61YtaCtaT22Q.80.00033
ORF1ab/nsp261Y61XtaCtaG110.055556
ORF1ab/nsp261Y61CtActGc110.055556
ORF1ab/nsp261Y61YtaCtaT11AE.10.011364
ORF1ab/nsp261Y61LtACtTA11All0
ORF1ab/nsp261Y61del2tACt--11All0
ORF1ab/nsp261Y61StActCc11All0
ORF1ab/nsp261Y61RTACCGT11All0
ORF1ab/nsp261Y61QTaCCaA11All0
ORF1ab/nsp261Y61ITACATT11All0
ORF1ab/nsp261Y61del1Tac-ac11All0
ORF1ab/nsp261Y61ETaCGaA11All0
ORF1ab/nsp261Y61YtaCtaT11AY.1110.000183
ORF1ab/nsp261Y61delTAC---11AY.1110.000183
ORF1ab/nsp261Y61ITACATT11AY.1190.000035
ORF1ab/nsp261Y61YtaCtaT11AY.16.10.00047
ORF1ab/nsp261Y61HTacCac11AY.200.000039
ORF1ab/nsp261Y61YtaCtaT11AY.200.000039
ORF1ab/nsp261Y61CtActGc11AY.200.000039
ORF1ab/nsp261Y61HTacCac11AY.250.000006
ORF1ab/nsp261Y61FtActTc11AY.250.000006
ORF1ab/nsp261Y61YtaCtaT11AY.260.000028
ORF1ab/nsp261Y61CtActGc11AY.290.000016
ORF1ab/nsp261Y61CtActGc11AY.30.00001
ORF1ab/nsp261Y61YtaCtaT11AY.320.000532
ORF1ab/nsp261Y61YtaCtaT11AY.340.000097
ORF1ab/nsp261Y61HTacCac11AY.350.000233
ORF1ab/nsp261Y61HTacCac11AY.390.000025
ORF1ab/nsp261Y61YtaCtaT11AY.39.10.00004
ORF1ab/nsp261Y61delTAC---11AY.40.000002
ORF1ab/nsp261Y61YtaCtaT11AY.4.40.000409
ORF1ab/nsp261Y61YtaCtaT11AY.420.00004
ORF1ab/nsp261Y61RTACCGT11AY.440.000006
ORF1ab/nsp261Y61QTaCCaA11AY.440.000006
ORF1ab/nsp261Y61YtaCtaT11AY.46.60.000072
ORF1ab/nsp261Y61YtaCtaT11AY.50.000021
ORF1ab/nsp261Y61YtaCtaT11AY.540.000095
ORF1ab/nsp261Y61HTacCac11AY.750.000056
ORF1ab/nsp261Y61FtActTc11B.10.000009
ORF1ab/nsp261Y61StActCc11B.10.000009
ORF1ab/nsp261Y61LtACtTA11B.1.10.000018
ORF1ab/nsp261Y61ETaCGaA11B.1.10.000018
ORF1ab/nsp261Y61CtActGc11B.1.10.000018
ORF1ab/nsp261Y61DTacGac11B.1.10.000018
ORF1ab/nsp261Y61FtActTc11B.1.10.000018
ORF1ab/nsp261Y61YtaCtaT11B.1.1.10.000327
ORF1ab/nsp261Y61YtaCtaT11B.1.1.1010.01
ORF1ab/nsp261Y61YtaCtaT11B.1.1.3170.000412
ORF1ab/nsp261Y61CtActGc11B.1.1.3180.000302
ORF1ab/nsp261Y61YtaCtaT11B.1.1.4120.007634
ORF1ab/nsp261Y61HTacCac11B.1.1.4860.001577
ORF1ab/nsp261Y61del1Tac-ac11B.1.1.70.000001
ORF1ab/nsp261Y61YtaCtaT11B.1.1.700.000341
ORF1ab/nsp261Y61XtaCtaA11B.1.1180.006711
ORF1ab/nsp261Y61del2tACt--11B.1.1390.000733
ORF1ab/nsp261Y61YtaCtaT11B.1.1600.000031
ORF1ab/nsp261Y61HTacCac11B.1.160.300.002976
ORF1ab/nsp261Y61CtActGc11B.1.1770.000013
ORF1ab/nsp261Y61YtaCtaT11B.1.177.200.001517
ORF1ab/nsp261Y61YtaCtaT11B.1.177.40.000211
ORF1ab/nsp261Y61HTacCac11B.1.177.570.000281
ORF1ab/nsp261Y61YtaCtaT11B.1.177.690.001484
ORF1ab/nsp261Y61FtActTc11B.1.20.000009
ORF1ab/nsp261Y61NTacAac11B.1.20.000009
ORF1ab/nsp261Y61YtaCtaT11B.1.2230.002778
ORF1ab/nsp261Y61YtaCtaT11B.1.258.140.00098
ORF1ab/nsp261Y61YtaCtaT11B.1.258.30.001675
ORF1ab/nsp261Y61YtaCtaT11B.1.360.000146
ORF1ab/nsp261Y61YtaCtaT11B.1.36.290.000517
ORF1ab/nsp261Y61YtaCtaT11B.1.3610.001289
ORF1ab/nsp261Y61YtaCtaT11B.1.4130.004255
ORF1ab/nsp261Y61delTAC---11B.1.4290.000024
ORF1ab/nsp261Y61YtaCtaT11B.1.4290.000024
ORF1ab/nsp261Y61DTacGac11B.1.4620.007246
ORF1ab/nsp261Y61YtaCtaT11B.1.466.20.000391
ORF1ab/nsp261Y61HTacCac11B.1.4990.00105
ORF1ab/nsp261Y61CtActGc11B.1.617.10.000129
ORF1ab/nsp261Y61delTAC---11B.1.617.20.000004
ORF1ab/nsp261Y61NTacAac11B.1.617.20.000004
ORF1ab/nsp261Y61delTAC---11B.1.617.30.002985
ORF1ab/nsp261Y61YtaCtaT11B.1.6280.000352
ORF1ab/nsp261Y61NTacAac11B.230.002924
ORF1ab/nsp261Y61delTAC---11B.340.013699
ORF1ab/nsp261Y61HTacCac11C.350.000774
ORF1ab/nsp261Y61delTAC---11C.350.000774
ORF1ab/nsp261Y61delTAC---11C.360.000911
ORF1ab/nsp261Y61YtaCtaT11D.20.000075
ORF1ab/nsp261Y61FtActTc11P.10.000016
ORF1ab/nsp261Y61YtaCtaT11P.1.150.000232
ORF1ab/nsp261Y61CtActGc11P.20.000187
ORF1ab/nsp261Y61YtaCtaT11P.20.000187