CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 606

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2606N606NN786NsynaaCaaT7086708612621-2623
ORF1ab/nsp2606N606DN786DnonsynAacGac2012000.9950252621-2623
ORF1ab/nsp2606N606DN786DnonsynAaCGaT20110.004975122621-2623
ORF1ab/nsp2606N606KN786KnonsynaaCaaA1621510.9320992621-2623
ORF1ab/nsp2606N606KN786KnonsynaaCaaG162110.06790122621-2623
ORF1ab/nsp2606N606delN786deldelAAC---11611612621-2623
ORF1ab/nsp2606N606SN786SnonsynaAcaGc55540.9818182621-2623
ORF1ab/nsp2606N606SN786SnonsynaACaGT5510.01818182621-2623
ORF1ab/nsp2606N606HN786HnonsynAacCac101012621-2623
ORF1ab/nsp2606N606IN786InonsynaAcaTc980.8888892621-2623
ORF1ab/nsp2606N606IN786InonsynaACaTA910.1111112621-2623
ORF1ab/nsp2606N606YN786YnonsynAacTac650.8333332621-2623
ORF1ab/nsp2606N606YN786YnonsynAaCTaT610.1666672621-2623
ORF1ab/nsp2606N606del2N786del2delaACa--2212621-2623
ORF1ab/nsp2606N606EN786EnonsynAaCGaA2212621-2623
ORF1ab/nsp2606N606TN786TnonsynaAcaCc210.52621-2623
ORF1ab/nsp2606N606TN786TnonsynaACaCG210.52621-2623
ORF1ab/nsp2606N606RN786RnonsynaACaGA1112621-2623

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2606N606NaaCaaT70867086All0.001355
ORF1ab/nsp2606N606NaaCaaT36623662B.1.1.70.003278
ORF1ab/nsp2606N606NaaCaaT649649P.1.40.633789
ORF1ab/nsp2606N606NaaCaaT509509B.1.617.20.001917
ORF1ab/nsp2606N606NaaCaaT349349AY.40.000543
ORF1ab/nsp2606N606DAacGac200201All0.000038
ORF1ab/nsp2606N606DAaCGaT1201All0
ORF1ab/nsp2606N606KaaCaaA151162All0.000029
ORF1ab/nsp2606N606KaaCaaG11162All0.000002
ORF1ab/nsp2606N606NaaCaaT129129B.1.6370.009426
ORF1ab/nsp2606N606NaaCaaT118118AY.440.000718
ORF1ab/nsp2606N606DAacGac118118B.1.1.70.000106
ORF1ab/nsp2606N606delAAC---116116All0.000022
ORF1ab/nsp2606N606NaaCaaT115115B.1.4290.002706
ORF1ab/nsp2606N606NaaCaaT110110AY.1030.000683
ORF1ab/nsp2606N606NaaCaaT101101B.1.1.2140.005601
ORF1ab/nsp2606N606NaaCaaT9292AY.430.000408
ORF1ab/nsp2606N606NaaCaaT8989AY.420.00358
ORF1ab/nsp2606N606KaaCaaA8888B.1.1.70.000079
ORF1ab/nsp2606N606NaaCaaT6969AY.360.010227
ORF1ab/nsp2606N606NaaCaaT6060AY.250.000361
ORF1ab/nsp2606N606SaAcaGc5455All0.00001
ORF1ab/nsp2606N606SaACaGT155All0
ORF1ab/nsp2606N606DAacGac5555AY.1130.007831
ORF1ab/nsp2606N606NaaCaaT5454B.1.20.000475
ORF1ab/nsp2606N606NaaCaaT4646C.370.005339
ORF1ab/nsp2606N606NaaCaaT4242B.1.4270.002121
ORF1ab/nsp2606N606NaaCaaT3939P.10.000614
ORF1ab/nsp2606N606NaaCaaT3737AY.200.001438
ORF1ab/nsp2606N606NaaCaaT3535AY.470.001089
ORF1ab/nsp2606N606NaaCaaT3535C.110.37234
ORF1ab/nsp2606N606NaaCaaT3434B.1.1.5190.00135
ORF1ab/nsp2606N606NaaCaaT3232B.10.000293
ORF1ab/nsp2606N606NaaCaaT3030AY.30.000298
ORF1ab/nsp2606N606NaaCaaT3030N.100.882353
ORF1ab/nsp2606N606NaaCaaT2929B.1.5960.002527
ORF1ab/nsp2606N606NaaCaaT2323AY.1020.00061
ORF1ab/nsp2606N606delAAC---2323B.1.1.70.000021
ORF1ab/nsp2606N606NaaCaaT2222AY.480.010233
ORF1ab/nsp2606N606NaaCaaT2121AY.460.002186
ORF1ab/nsp2606N606NaaCaaT2121B.1.1.4250.954545
ORF1ab/nsp2606N606SaAcaGc2020B.1.1.70.000018
ORF1ab/nsp2606N606NaaCaaT1818AY.1190.000636
ORF1ab/nsp2606N606NaaCaaT1717B.1.177.160.011296
ORF1ab/nsp2606N606NaaCaaT1717B.1.3510.000505
ORF1ab/nsp2606N606NaaCaaT1616AY.660.017112
ORF1ab/nsp2606N606NaaCaaT1616AY.99.20.001475
ORF1ab/nsp2606N606NaaCaaT1616B.1.1600.000499
ORF1ab/nsp2606N606NaaCaaT1515AY.260.000425
ORF1ab/nsp2606N606KaaCaaA1415AY.40.000022
ORF1ab/nsp2606N606KaaCaaG115AY.40.000002
ORF1ab/nsp2606N606DAacGac1414B.1.1.3030.038674
ORF1ab/nsp2606N606NaaCaaT1414P.1.150.003253
ORF1ab/nsp2606N606NaaCaaT1313AY.50.000268
ORF1ab/nsp2606N606NaaCaaT1212B.1.2210.000852
ORF1ab/nsp2606N606delAAC---1111B.10.000101
ORF1ab/nsp2606N606NaaCaaT1111B.1.1770.000145
ORF1ab/nsp2606N606NaaCaaT1111B.1.177.650.007319
ORF1ab/nsp2606N606HAacCac1010All0.000002
ORF1ab/nsp2606N606NaaCaaT1010AY.390.000247
ORF1ab/nsp2606N606NaaCaaT1010B.1.2430.000696
ORF1ab/nsp2606N606NaaCaaT1010B.1.2580.000665
ORF1ab/nsp2606N606IaAcaTc89All0.000002
ORF1ab/nsp2606N606IaACaTA19All0
ORF1ab/nsp2606N606NaaCaaT99AY.290.000142
ORF1ab/nsp2606N606NaaCaaT99B.1.10.000163
ORF1ab/nsp2606N606NaaCaaT88AY.1180.000501
ORF1ab/nsp2606N606NaaCaaT88B.1.6190.006969
ORF1ab/nsp2606N606NaaCaaT88P.1.140.000382
ORF1ab/nsp2606N606KaaCaaA67AY.250.000036
ORF1ab/nsp2606N606KaaCaaG17AY.250.000006
ORF1ab/nsp2606N606NaaCaaT77B.1.1.330.002946
ORF1ab/nsp2606N606delAAC---77B.1.1770.000092
ORF1ab/nsp2606N606NaaCaaT77B.1.5250.000792
ORF1ab/nsp2606N606NaaCaaT77B.1.6210.00062
ORF1ab/nsp2606N606delAAC---660.333333
ORF1ab/nsp2606N606YAacTac56All0.000001
ORF1ab/nsp2606N606YAaCTaT16All0
ORF1ab/nsp2606N606NaaCaaT66AY.1130.000854
ORF1ab/nsp2606N606HAacCac66AY.120.001896
ORF1ab/nsp2606N606SaAcaGc66AY.30.00006
ORF1ab/nsp2606N606NaaCaaT66AY.340.000582
ORF1ab/nsp2606N606NaaCaaT66AY.4.20.00013
ORF1ab/nsp2606N606NaaCaaT66AY.60.000247
ORF1ab/nsp2606N606NaaCaaT66AY.9.20.00022
ORF1ab/nsp2606N606NaaCaaT66B.1.177.600.001311
ORF1ab/nsp2606N606NaaCaaT66B.1.5750.00182
ORF1ab/nsp2606N606NaaCaaT55AY.1000.00023
ORF1ab/nsp2606N606NaaCaaT55AY.300.001979
ORF1ab/nsp2606N606NaaCaaT55AY.530.001438
ORF1ab/nsp2606N606NaaCaaT55AY.75.10.000902
ORF1ab/nsp2606N606delAAC---55B.1.10.000091
ORF1ab/nsp2606N606SaAcaGc55B.1.20.000044
ORF1ab/nsp2606N606KaaCaaA55B.1.2400.001078
ORF1ab/nsp2606N606NaaCaaT55B.1.30.013089
ORF1ab/nsp2606N606NaaCaaT44AY.1200.000149
ORF1ab/nsp2606N606NaaCaaT44AY.3.10.000341
ORF1ab/nsp2606N606NaaCaaT44AY.330.000267
ORF1ab/nsp2606N606NaaCaaT44AY.450.000487
ORF1ab/nsp2606N606NaaCaaT44AY.550.00367
ORF1ab/nsp2606N606NaaCaaT44B.1.1.3110.001433
ORF1ab/nsp2606N606KaaCaaA44B.1.1.5190.000159
ORF1ab/nsp2606N606KaaCaaA44B.1.2340.000528
ORF1ab/nsp2606N606NaaCaaT44B.1.360.000584
ORF1ab/nsp2606N606NaaCaaT44B.1.617.10.000516
ORF1ab/nsp2606N606delAAC---44P.10.000063
ORF1ab/nsp2606N606NaaCaaT44P.1.100.001078
ORF1ab/nsp2606N606KaaCaaA23AY.1030.000012
ORF1ab/nsp2606N606KaaCaaG13AY.1030.000006
ORF1ab/nsp2606N606NaaCaaT33AY.1060.001005
ORF1ab/nsp2606N606NaaCaaT33AY.1210.000406
ORF1ab/nsp2606N606NaaCaaT33AY.270.000194
ORF1ab/nsp2606N606NaaCaaT33AY.46.40.000494
ORF1ab/nsp2606N606NaaCaaT33AY.540.000286
ORF1ab/nsp2606N606NaaCaaT33AY.610.000314
ORF1ab/nsp2606N606NaaCaaT33AY.970.005102
ORF1ab/nsp2606N606SaAcaGc33B.10.000027
ORF1ab/nsp2606N606delAAC---33B.1.1.330.001263
ORF1ab/nsp2606N606delAAC---33B.1.1.3480.002389
ORF1ab/nsp2606N606NaaCaaT33B.1.1.540.009063
ORF1ab/nsp2606N606HAacCac33B.1.1.70.000003
ORF1ab/nsp2606N606delAAC---33B.1.20.000026
ORF1ab/nsp2606N606KaaCaaA23B.1.20.000018
ORF1ab/nsp2606N606KaaCaaG13B.1.20.000009
ORF1ab/nsp2606N606NaaCaaT33B.1.258.170.000312
ORF1ab/nsp2606N606NaaCaaT33B.1.351.50.001799
ORF1ab/nsp2606N606KaaCaaA33B.1.4270.000151
ORF1ab/nsp2606N606delAAC---33B.1.4290.000071
ORF1ab/nsp2606N606KaaCaaA23B.1.617.20.000008
ORF1ab/nsp2606N606KaaCaaG13B.1.617.20.000004
ORF1ab/nsp2606N606DAacGac220.111111
ORF1ab/nsp2606N606EAaCGaA220.111111
ORF1ab/nsp2606N606KaaCaaA220.111111
ORF1ab/nsp2606N606EAaCGaA22All0
ORF1ab/nsp2606N606del2aACa--22All0
ORF1ab/nsp2606N606TaACaCG12All0
ORF1ab/nsp2606N606TaAcaCc12All0
ORF1ab/nsp2606N606NaaCaaT22AY.1050.001286
ORF1ab/nsp2606N606KaaCaaA22AY.1200.000074
ORF1ab/nsp2606N606SaAcaGc22AY.430.000009
ORF1ab/nsp2606N606KaaCaaA22AY.440.000012
ORF1ab/nsp2606N606SaACaGT12AY.440.000006
ORF1ab/nsp2606N606SaAcaGc12AY.440.000006
ORF1ab/nsp2606N606KaaCaaG22AY.450.000243
ORF1ab/nsp2606N606NaaCaaT22AY.640.00119
ORF1ab/nsp2606N606NaaCaaT22AY.680.000547
ORF1ab/nsp2606N606NaaCaaT22AY.740.000231
ORF1ab/nsp2606N606delAAC---22AY.75.10.000361
ORF1ab/nsp2606N606DAacGac22B.10.000018
ORF1ab/nsp2606N606IaAcaTc22B.10.000018
ORF1ab/nsp2606N606KaaCaaG12B.10.000009
ORF1ab/nsp2606N606KaaCaaA12B.10.000009
ORF1ab/nsp2606N606NaaCaaT22B.1.1.10.000653
ORF1ab/nsp2606N606NaaCaaT22B.1.1.2410.004141
ORF1ab/nsp2606N606delAAC---22B.1.1.3150.016949
ORF1ab/nsp2606N606NaaCaaT22B.1.1.3480.001592
ORF1ab/nsp2606N606delAAC---22B.1.1.460.008734
ORF1ab/nsp2606N606KaaCaaA22B.1.1770.000026
ORF1ab/nsp2606N606NaaCaaT22B.1.177.440.001038
ORF1ab/nsp2606N606NaaCaaT22B.1.177.620.002384
ORF1ab/nsp2606N606NaaCaaT22B.1.3610.002577
ORF1ab/nsp2606N606NaaCaaT22B.1.4210.014925
ORF1ab/nsp2606N606delAAC---22B.1.4240.016129
ORF1ab/nsp2606N606NaaCaaT22B.1.466.20.000782
ORF1ab/nsp2606N606NaaCaaT22B.1.5260.000047
ORF1ab/nsp2606N606SaAcaGc22B.1.5260.000047
ORF1ab/nsp2606N606delAAC---22B.1.5260.000047
ORF1ab/nsp2606N606NaaCaaT22B.1.5770.001375
ORF1ab/nsp2606N606SaAcaGc22B.1.617.20.000008
ORF1ab/nsp2606N606delAAC---22B.1.6210.000177
ORF1ab/nsp2606N606KaaCaaG22D.20.00015
ORF1ab/nsp2606N606delAAC---22N.60.014184
ORF1ab/nsp2606N606DAacGac22P.10.000032
ORF1ab/nsp2606N606delAAC---22P.1.150.000465
ORF1ab/nsp2606N606NaaCaaT22P.1.20.002312
ORF1ab/nsp2606N606NaaCaaT22Q.80.00033
ORF1ab/nsp2606N606NaaCaaT11A.2.20.001689
ORF1ab/nsp2606N606NaaCaaT11A.2.50.000499
ORF1ab/nsp2606N606RaACaGA11All0
ORF1ab/nsp2606N606KaaCaaA11AY.1020.000027
ORF1ab/nsp2606N606TaACaCG11AY.1030.000006
ORF1ab/nsp2606N606SaAcaGc11AY.1030.000006
ORF1ab/nsp2606N606delAAC---11AY.1080.001103
ORF1ab/nsp2606N606NaaCaaT11AY.1160.000287
ORF1ab/nsp2606N606NaaCaaT11AY.1170.000085
ORF1ab/nsp2606N606delAAC---11AY.1180.000063
ORF1ab/nsp2606N606NaaCaaT11AY.140.000088
ORF1ab/nsp2606N606NaaCaaT11AY.160.00038
ORF1ab/nsp2606N606NaaCaaT11AY.16.10.00047
ORF1ab/nsp2606N606NaaCaaT11AY.230.00007
ORF1ab/nsp2606N606SaAcaGc11AY.250.000006
ORF1ab/nsp2606N606KaaCaaA11AY.290.000016
ORF1ab/nsp2606N606SaAcaGc11AY.330.000067
ORF1ab/nsp2606N606NaaCaaT11AY.350.000233
ORF1ab/nsp2606N606IaAcaTc11AY.390.000025
ORF1ab/nsp2606N606YAacTac11AY.39.10.00004
ORF1ab/nsp2606N606YAacTac11AY.40.000002
ORF1ab/nsp2606N606del2aACa--11AY.40.000002
ORF1ab/nsp2606N606delAAC---11AY.40.000002
ORF1ab/nsp2606N606SaAcaGc11AY.40.000002
ORF1ab/nsp2606N606NaaCaaT11AY.4.50.000107
ORF1ab/nsp2606N606delAAC---11AY.4.50.000107
ORF1ab/nsp2606N606delAAC---11AY.400.000964
ORF1ab/nsp2606N606delAAC---11AY.420.00004
ORF1ab/nsp2606N606DAaCGaT11AY.430.000004
ORF1ab/nsp2606N606delAAC---11AY.430.000004
ORF1ab/nsp2606N606RaACaGA11AY.440.000006
ORF1ab/nsp2606N606SaAcaGc11AY.460.000104
ORF1ab/nsp2606N606KaaCaaA11AY.46.10.001027
ORF1ab/nsp2606N606NaaCaaT11AY.46.10.001027
ORF1ab/nsp2606N606YAacTac11AY.46.20.000635
ORF1ab/nsp2606N606NaaCaaT11AY.46.50.000198
ORF1ab/nsp2606N606NaaCaaT11AY.46.60.000072
ORF1ab/nsp2606N606KaaCaaA11AY.470.000031
ORF1ab/nsp2606N606NaaCaaT11AY.5.40.000277
ORF1ab/nsp2606N606KaaCaaG11AY.550.000917
ORF1ab/nsp2606N606delAAC---11AY.60.000041
ORF1ab/nsp2606N606SaAcaGc11AY.610.000105
ORF1ab/nsp2606N606KaaCaaA11AY.620.000436
ORF1ab/nsp2606N606delAAC---11AY.680.000274
ORF1ab/nsp2606N606TaAcaCc11AY.690.000187
ORF1ab/nsp2606N606delAAC---11AY.730.000665
ORF1ab/nsp2606N606NaaCaaT11AY.750.000056
ORF1ab/nsp2606N606NaaCaaT11AY.9.10.000084
ORF1ab/nsp2606N606DAacGac11AY.960.002075
ORF1ab/nsp2606N606NaaCaaT11AY.980.000079
ORF1ab/nsp2606N606NaaCaaT11AY.98.10.000048
ORF1ab/nsp2606N606delAAC---11AY.98.10.000048
ORF1ab/nsp2606N606NaaCaaT11AY.990.001049
ORF1ab/nsp2606N606NaaCaaT11B0.000128
ORF1ab/nsp2606N606HAacCac11B.10.000009
ORF1ab/nsp2606N606YAacTac11B.10.000009
ORF1ab/nsp2606N606IaAcaTc11B.1.10.000018
ORF1ab/nsp2606N606KaaCaaA11B.1.10.000018
ORF1ab/nsp2606N606delAAC---11B.1.1.1390.022727
ORF1ab/nsp2606N606NaaCaaT11B.1.1.1760.000439
ORF1ab/nsp2606N606NaaCaaT11B.1.1.280.000311
ORF1ab/nsp2606N606KaaCaaA11B.1.1.2840.000107
ORF1ab/nsp2606N606DAacGac11B.1.1.2910.000742
ORF1ab/nsp2606N606IaACaTA11B.1.1.3060.000438
ORF1ab/nsp2606N606NaaCaaT11B.1.1.3540.004386
ORF1ab/nsp2606N606NaaCaaT11B.1.1.390.00051
ORF1ab/nsp2606N606NaaCaaT11B.1.1.3950.055556
ORF1ab/nsp2606N606NaaCaaT11B.1.1.4070.041667
ORF1ab/nsp2606N606delAAC---11B.1.1.4160.000905
ORF1ab/nsp2606N606delAAC---11B.1.1.4480.002033
ORF1ab/nsp2606N606NaaCaaT11B.1.1.4850.016667
ORF1ab/nsp2606N606NaaCaaT11B.1.1.500.000679
ORF1ab/nsp2606N606delAAC---11B.1.1.5170.006803
ORF1ab/nsp2606N606NaaCaaT11B.1.1.5250.005464
ORF1ab/nsp2606N606SaAcaGc11B.1.1.610.008772
ORF1ab/nsp2606N606del2aACa--11B.1.1.70.000001
ORF1ab/nsp2606N606delAAC---11B.1.1.700.000341
ORF1ab/nsp2606N606KaaCaaA11B.1.1.700.000341
ORF1ab/nsp2606N606NaaCaaT11B.1.110.30.000718
ORF1ab/nsp2606N606delAAC---11B.1.1400.018868
ORF1ab/nsp2606N606SaAcaGc11B.1.1470.000756
ORF1ab/nsp2606N606delAAC---11B.1.1600.000031
ORF1ab/nsp2606N606NaaCaaT11B.1.160.150.00495
ORF1ab/nsp2606N606IaAcaTc11B.1.1770.000013
ORF1ab/nsp2606N606DAacGac11B.1.1770.000013
ORF1ab/nsp2606N606NaaCaaT11B.1.177.540.000606
ORF1ab/nsp2606N606SaAcaGc11B.1.177.570.000281
ORF1ab/nsp2606N606delAAC---11B.1.177.620.001192
ORF1ab/nsp2606N606delAAC---11B.1.177.830.001481
ORF1ab/nsp2606N606NaaCaaT11B.1.177.860.000183
ORF1ab/nsp2606N606delAAC---11B.1.177.90.001332
ORF1ab/nsp2606N606DAacGac11B.1.20.000009
ORF1ab/nsp2606N606SaAcaGc11B.1.2210.000071
ORF1ab/nsp2606N606NaaCaaT11B.1.221.30.000833
ORF1ab/nsp2606N606NaaCaaT11B.1.2320.000537
ORF1ab/nsp2606N606NaaCaaT11B.1.2340.000132
ORF1ab/nsp2606N606NaaCaaT11B.1.2350.002519
ORF1ab/nsp2606N606NaaCaaT11B.1.2400.000216
ORF1ab/nsp2606N606KaaCaaA11B.1.2430.00007
ORF1ab/nsp2606N606YAacTac11B.1.2580.000067
ORF1ab/nsp2606N606NaaCaaT11B.1.2790.000514
ORF1ab/nsp2606N606NaaCaaT11B.1.3290.000608
ORF1ab/nsp2606N606NaaCaaT11B.1.3440.008197
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ORF1ab/nsp2606N606delAAC---11B.610.005747
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ORF1ab/nsp2606N606delAAC---11Q.80.000165