CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 601

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2601T601IT781InonsynaCaaTa219221910.9995442606-2608
ORF1ab/nsp2601T601IT781InonsynaCAaTT219210.0004562042606-2608
ORF1ab/nsp2601T601KT781KnonsynaCaaAa19719712606-2608
ORF1ab/nsp2601T601TT781TsynacAacG132950.7196972606-2608
ORF1ab/nsp2601T601TT781TsynacAacC132320.2424242606-2608
ORF1ab/nsp2601T601TT781TsynacAacT13250.03787882606-2608
ORF1ab/nsp2601T601delT781deldelACA---12312312606-2608
ORF1ab/nsp2601T601AT781AnonsynAcaGca10710712606-2608
ORF1ab/nsp2601T601ST781SnonsynAcaTca850.6252606-2608
ORF1ab/nsp2601T601ST781SnonsynAcATcT810.1252606-2608
ORF1ab/nsp2601T601ST781SnonsynaCAaGC810.1252606-2608
ORF1ab/nsp2601T601ST781SnonsynAcATcC810.1252606-2608
ORF1ab/nsp2601T601RT781RnonsynaCaaGa650.8333332606-2608
ORF1ab/nsp2601T601RT781RnonsynaCAaGG610.1666672606-2608
ORF1ab/nsp2601T601del2T781del2delACA--C310.3333332606-2608
ORF1ab/nsp2601T601del2T781del2delACA--T310.3333332606-2608
ORF1ab/nsp2601T601del2T781del2delACa--a310.3333332606-2608
ORF1ab/nsp2601T601NT781NnonsynaCAaAT2212606-2608
ORF1ab/nsp2601T601XT781XnonsynACaTGa1112606-2608
ORF1ab/nsp2601T601CT781CnonsynACATGC1112606-2608
ORF1ab/nsp2601T601PT781PnonsynAcaCca1112606-2608
ORF1ab/nsp2601T601VT781VnonsynACAGTT1112606-2608
ORF1ab/nsp2601T601LT781LnonsynACaTTa1112606-2608

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2601T601IaCaaTa21912192All0.000419
ORF1ab/nsp2601T601IaCAaTT12192All0
ORF1ab/nsp2601T601IaCaaTa706706B.1.3490.504646
ORF1ab/nsp2601T601IaCaaTa560560B.1.1.70.000501
ORF1ab/nsp2601T601KaCaaAa197197All0.000038
ORF1ab/nsp2601T601IaCaaTa179179AY.250.001077
ORF1ab/nsp2601T601IaCaaTa153153B.1.4270.007726
ORF1ab/nsp2601T601KaCaaAa145145B.1.1.70.00013
ORF1ab/nsp2601T601IaCaaTa135135AY.40.00021
ORF1ab/nsp2601T601TacAacG95132All0.000018
ORF1ab/nsp2601T601TacAacC32132All0.000006
ORF1ab/nsp2601T601TacAacT5132All0.000001
ORF1ab/nsp2601T601delACA---123123All0.000024
ORF1ab/nsp2601T601AAcaGca107107All0.00002
ORF1ab/nsp2601T601IaCaaTa4242B.10.000385
ORF1ab/nsp2601T601TacAacG3535AY.460.003643
ORF1ab/nsp2601T601IaCaaTa3232AY.750.001793
ORF1ab/nsp2601T601TacAacC2929C.36.30.016449
ORF1ab/nsp2601T601delACA---2727B.1.1.70.000024
ORF1ab/nsp2601T601KaCaaAa2626AY.30.000259
ORF1ab/nsp2601T601AAcaGca2525B.1.1.70.000022
ORF1ab/nsp2601T601IaCaaTa2525B.1.617.20.000094
ORF1ab/nsp2601T601IaCaaTa2525Q.70.027778
ORF1ab/nsp2601T601IaCaaTa2121AY.430.000093
ORF1ab/nsp2601T601IaCaaTa2121B.1.1770.000277
ORF1ab/nsp2601T601AAcaGca1919B.1.5170.008113
ORF1ab/nsp2601T601IaCaaTa1818B.1.2210.001279
ORF1ab/nsp2601T601IaCaaTa1717AY.1130.002421
ORF1ab/nsp2601T601TacAacG1617B.1.1.70.000014
ORF1ab/nsp2601T601TacAacT117B.1.1.70.000001
ORF1ab/nsp2601T601IaCaaTa1414AY.440.000085
ORF1ab/nsp2601T601IaCaaTa1414B.1.1.630.005401
ORF1ab/nsp2601T601delACA---1313B.10.000119
ORF1ab/nsp2601T601IaCaaTa1313B.1.20.000114
ORF1ab/nsp2601T601IaCaaTa1212AY.30.000119
ORF1ab/nsp2601T601AAcaGca1010B.1.617.20.000038
ORF1ab/nsp2601T601IaCaaTa99AY.470.00028
ORF1ab/nsp2601T601IaCaaTa99P.10.000142
ORF1ab/nsp2601T601SAcaTca58All0.000001
ORF1ab/nsp2601T601SAcATcT18All0
ORF1ab/nsp2601T601SaCAaGC18All0
ORF1ab/nsp2601T601SAcATcC18All0
ORF1ab/nsp2601T601TacAacG88AY.1070.003728
ORF1ab/nsp2601T601TacAacG88B.1.617.20.00003
ORF1ab/nsp2601T601IaCaaTa88C.370.000929
ORF1ab/nsp2601T601IaCaaTa88Q.80.001319
ORF1ab/nsp2601T601AAcaGca77AY.40.000011
ORF1ab/nsp2601T601IaCaaTa77AY.4.50.000752
ORF1ab/nsp2601T601delACA---77B.1.1770.000092
ORF1ab/nsp2601T601AAcaGca77P.10.00011
ORF1ab/nsp2601T601delACA---660.333333
ORF1ab/nsp2601T601RaCaaGa56All0.000001
ORF1ab/nsp2601T601RaCAaGG16All0
ORF1ab/nsp2601T601IaCaaTa66AY.200.000233
ORF1ab/nsp2601T601IaCaaTa66AY.620.002614
ORF1ab/nsp2601T601IaCaaTa66B.400.002186
ORF1ab/nsp2601T601delACA---55B.1.10.000091
ORF1ab/nsp2601T601IaCaaTa45B.1.10.000073
ORF1ab/nsp2601T601IaCAaTT15B.1.10.000018
ORF1ab/nsp2601T601delACA---55B.1.20.000044
ORF1ab/nsp2601T601IaCaaTa55B.1.258.170.00052
ORF1ab/nsp2601T601delACA---55P.10.000079
ORF1ab/nsp2601T601IaCaaTa55Q.30.000725
ORF1ab/nsp2601T601IaCaaTa44AY.1020.000106
ORF1ab/nsp2601T601IaCaaTa44AY.130.000644
ORF1ab/nsp2601T601IaCaaTa44AY.4.20.000087
ORF1ab/nsp2601T601AAcaGca44AY.610.000419
ORF1ab/nsp2601T601KaCaaAa44B.10.000037
ORF1ab/nsp2601T601IaCaaTa44B.1.1.4640.005891
ORF1ab/nsp2601T601IaCaaTa44B.1.3750.003279
ORF1ab/nsp2601T601TacAacG44C.260.029412
ORF1ab/nsp2601T601del2ACA--T13All0
ORF1ab/nsp2601T601del2ACa--a13All0
ORF1ab/nsp2601T601del2ACA--C13All0
ORF1ab/nsp2601T601AAcaGca33AY.1090.002219
ORF1ab/nsp2601T601TacAacG33AY.1170.000254
ORF1ab/nsp2601T601TacAacG33AY.250.000018
ORF1ab/nsp2601T601IaCaaTa33AY.360.000445
ORF1ab/nsp2601T601IaCaaTa33AY.450.000365
ORF1ab/nsp2601T601TacAacG33AY.98.10.000145
ORF1ab/nsp2601T601SaCAaGC13B.1.10.000018
ORF1ab/nsp2601T601SAcATcC13B.1.10.000018
ORF1ab/nsp2601T601SAcaTca13B.1.10.000018
ORF1ab/nsp2601T601IaCaaTa33B.1.1.2220.000612
ORF1ab/nsp2601T601IaCaaTa33B.1.1.2970.006711
ORF1ab/nsp2601T601delACA---33B.1.1.330.001263
ORF1ab/nsp2601T601delACA---33B.1.1.3480.002389
ORF1ab/nsp2601T601AAcaGca33B.1.177.60.00293
ORF1ab/nsp2601T601IaCaaTa33B.1.177.90.003995
ORF1ab/nsp2601T601delACA---33B.1.4290.000071
ORF1ab/nsp2601T601KaCaaAa33B.1.4290.000071
ORF1ab/nsp2601T601IaCaaTa33B.1.4710.008197
ORF1ab/nsp2601T601KaCaaAa33B.1.617.20.000011
ORF1ab/nsp2601T601IaCaaTa33C.160.003181
ORF1ab/nsp2601T601IaCaaTa33P.1.70.000958
ORF1ab/nsp2601T601NaCAaAT220.111111
ORF1ab/nsp2601T601TacAacT220.111111
ORF1ab/nsp2601T601AAcaGca22A0.000774
ORF1ab/nsp2601T601TacAacG22A.2.40.006734
ORF1ab/nsp2601T601NaCAaAT22All0
ORF1ab/nsp2601T601TacAacG22AY.1000.000092
ORF1ab/nsp2601T601IaCaaTa22AY.1030.000012
ORF1ab/nsp2601T601KaCaaAa22AY.1100.000225
ORF1ab/nsp2601T601IaCaaTa22AY.1190.000071
ORF1ab/nsp2601T601IaCaaTa22AY.1200.000074
ORF1ab/nsp2601T601IaCaaTa22AY.260.000057
ORF1ab/nsp2601T601AAcaGca22AY.340.000194
ORF1ab/nsp2601T601AAcaGca22AY.430.000009
ORF1ab/nsp2601T601IaCaaTa22AY.590.001059
ORF1ab/nsp2601T601IaCaaTa22AY.610.00021
ORF1ab/nsp2601T601IaCaaTa22AY.90.000135
ORF1ab/nsp2601T601IaCaaTa22AY.970.003401
ORF1ab/nsp2601T601IaCaaTa22AY.98.10.000097
ORF1ab/nsp2601T601TacAacC12B.10.000009
ORF1ab/nsp2601T601TacAacG12B.10.000009
ORF1ab/nsp2601T601IaCaaTa22B.1.1.280.000622
ORF1ab/nsp2601T601IaCaaTa22B.1.1.3060.000877
ORF1ab/nsp2601T601delACA---22B.1.1.3150.016949
ORF1ab/nsp2601T601IaCaaTa22B.1.1.4070.083333
ORF1ab/nsp2601T601IaCaaTa22B.1.1.4490.045455
ORF1ab/nsp2601T601delACA---22B.1.1.460.008734
ORF1ab/nsp2601T601delACA---22B.1.1.5170.013605
ORF1ab/nsp2601T601AAcaGca22B.1.2430.000139
ORF1ab/nsp2601T601IaCaaTa22B.1.2430.000139
ORF1ab/nsp2601T601IaCaaTa22B.1.2580.000133
ORF1ab/nsp2601T601AAcaGca22B.1.360.000292
ORF1ab/nsp2601T601delACA---22B.1.4240.016129
ORF1ab/nsp2601T601IaCaaTa22B.1.5170.000854
ORF1ab/nsp2601T601IaCaaTa22B.1.5250.000226
ORF1ab/nsp2601T601delACA---22B.1.5260.000047
ORF1ab/nsp2601T601IaCaaTa22B.1.5810.018868
ORF1ab/nsp2601T601AAcaGca22B.1.617.10.000258
ORF1ab/nsp2601T601delACA---22B.1.6210.000177
ORF1ab/nsp2601T601IaCaaTa22B.1.6370.000146
ORF1ab/nsp2601T601IaCaaTa22C.110.021277
ORF1ab/nsp2601T601KaCaaAa22C.370.000232
ORF1ab/nsp2601T601delACA---22N.60.014184
ORF1ab/nsp2601T601delACA---22P.1.150.000465
ORF1ab/nsp2601T601KaCaaAa11A.10.000282
ORF1ab/nsp2601T601TacAacT11A.20.000662
ORF1ab/nsp2601T601KaCaaAa11A.2.40.003367
ORF1ab/nsp2601T601VACAGTT11All0
ORF1ab/nsp2601T601LACaTTa11All0
ORF1ab/nsp2601T601CACATGC11All0
ORF1ab/nsp2601T601XACaTGa11All0
ORF1ab/nsp2601T601PAcaCca11All0
ORF1ab/nsp2601T601AAcaGca11AY.1020.000027
ORF1ab/nsp2601T601AAcaGca11AY.1030.000006
ORF1ab/nsp2601T601IaCaaTa11AY.1040.001984
ORF1ab/nsp2601T601delACA---11AY.1080.001103
ORF1ab/nsp2601T601IaCaaTa11AY.1110.000183
ORF1ab/nsp2601T601KaCaaAa11AY.1170.000085
ORF1ab/nsp2601T601delACA---11AY.1180.000063
ORF1ab/nsp2601T601IaCaaTa11AY.1210.000135
ORF1ab/nsp2601T601AAcaGca11AY.130.000161
ORF1ab/nsp2601T601IaCaaTa11AY.160.00038
ORF1ab/nsp2601T601TacAacG11AY.16.10.00047
ORF1ab/nsp2601T601AAcaGca11AY.250.000006
ORF1ab/nsp2601T601AAcaGca11AY.260.000028
ORF1ab/nsp2601T601KaCaaAa11AY.260.000028
ORF1ab/nsp2601T601IaCaaTa11AY.280.00189
ORF1ab/nsp2601T601KaCaaAa11AY.290.000016
ORF1ab/nsp2601T601IaCaaTa11AY.290.000016
ORF1ab/nsp2601T601IaCaaTa11AY.340.000097
ORF1ab/nsp2601T601TacAacG11AY.390.000025
ORF1ab/nsp2601T601KaCaaAa11AY.390.000025
ORF1ab/nsp2601T601IaCaaTa11AY.390.000025
ORF1ab/nsp2601T601TacAacC11AY.39.10.00004
ORF1ab/nsp2601T601KaCaaAa11AY.40.000002
ORF1ab/nsp2601T601delACA---11AY.40.000002
ORF1ab/nsp2601T601TacAacG11AY.40.000002
ORF1ab/nsp2601T601SAcaTca11AY.40.000002
ORF1ab/nsp2601T601AAcaGca11AY.4.20.000022
ORF1ab/nsp2601T601delACA---11AY.4.50.000107
ORF1ab/nsp2601T601delACA---11AY.400.000964
ORF1ab/nsp2601T601delACA---11AY.420.00004
ORF1ab/nsp2601T601KaCaaAa11AY.430.000004
ORF1ab/nsp2601T601TacAacG11AY.440.000006
ORF1ab/nsp2601T601KaCaaAa11AY.440.000006
ORF1ab/nsp2601T601RaCaaGa11AY.440.000006
ORF1ab/nsp2601T601SAcaTca11AY.440.000006
ORF1ab/nsp2601T601LACaTTa11AY.440.000006
ORF1ab/nsp2601T601del2ACa--a11AY.440.000006
ORF1ab/nsp2601T601IaCaaTa11AY.460.000104
ORF1ab/nsp2601T601IaCaaTa11AY.46.20.000635
ORF1ab/nsp2601T601IaCaaTa11AY.46.40.000165
ORF1ab/nsp2601T601IaCaaTa11AY.46.60.000072
ORF1ab/nsp2601T601RaCaaGa11AY.470.000031
ORF1ab/nsp2601T601TacAacG11AY.5.30.000337
ORF1ab/nsp2601T601AAcaGca11AY.530.000288
ORF1ab/nsp2601T601IaCaaTa11AY.540.000095
ORF1ab/nsp2601T601AAcaGca11AY.550.000917
ORF1ab/nsp2601T601VACAGTT11AY.550.000917
ORF1ab/nsp2601T601delACA---11AY.60.000041
ORF1ab/nsp2601T601IaCaaTa11AY.600.000938
ORF1ab/nsp2601T601IaCaaTa11AY.660.00107
ORF1ab/nsp2601T601delACA---11AY.680.000274
ORF1ab/nsp2601T601AAcaGca11AY.690.000187
ORF1ab/nsp2601T601del2ACA--C11AY.7.20.000559
ORF1ab/nsp2601T601delACA---11AY.730.000665
ORF1ab/nsp2601T601AAcaGca11AY.750.000056
ORF1ab/nsp2601T601KaCaaAa11AY.750.000056
ORF1ab/nsp2601T601delACA---11AY.75.10.00018
ORF1ab/nsp2601T601IaCaaTa11AY.790.001211
ORF1ab/nsp2601T601delACA---11AY.98.10.000048
ORF1ab/nsp2601T601TacAacG11B0.000128
ORF1ab/nsp2601T601AAcaGca11B0.000128
ORF1ab/nsp2601T601AAcaGca11B.10.000009
ORF1ab/nsp2601T601RaCaaGa11B.10.000009
ORF1ab/nsp2601T601PAcaCca11B.10.000009
ORF1ab/nsp2601T601XACaTGa11B.1.10.000018
ORF1ab/nsp2601T601CACATGC11B.1.10.000018
ORF1ab/nsp2601T601RaCaaGa11B.1.10.000018
ORF1ab/nsp2601T601TacAacC11B.1.10.000018
ORF1ab/nsp2601T601IaCaaTa11B.1.1.10.000327
ORF1ab/nsp2601T601delACA---11B.1.1.1390.022727
ORF1ab/nsp2601T601IaCaaTa11B.1.1.2160.00089
ORF1ab/nsp2601T601RaCaaGa11B.1.1.390.00051
ORF1ab/nsp2601T601IaCaaTa11B.1.1.390.00051
ORF1ab/nsp2601T601delACA---11B.1.1.4160.000905
ORF1ab/nsp2601T601delACA---11B.1.1.4480.002033
ORF1ab/nsp2601T601IaCaaTa11B.1.1.5170.006803
ORF1ab/nsp2601T601AAcaGca11B.1.1.5190.00004
ORF1ab/nsp2601T601IaCaaTa11B.1.1.5190.00004
ORF1ab/nsp2601T601delACA---11B.1.1.700.000341
ORF1ab/nsp2601T601IaCaaTa11B.1.1.700.000341
ORF1ab/nsp2601T601TacAacG11B.1.1.700.000341
ORF1ab/nsp2601T601AAcaGca11B.1.1.80.003584
ORF1ab/nsp2601T601delACA---11B.1.1400.018868
ORF1ab/nsp2601T601IaCaaTa11B.1.1600.000031
ORF1ab/nsp2601T601delACA---11B.1.1600.000031
ORF1ab/nsp2601T601IaCaaTa11B.1.177.200.001517
ORF1ab/nsp2601T601KaCaaAa11B.1.177.210.000076
ORF1ab/nsp2601T601IaCaaTa11B.1.177.320.00135
ORF1ab/nsp2601T601IaCaaTa11B.1.177.330.001645
ORF1ab/nsp2601T601KaCaaAa11B.1.177.440.000519
ORF1ab/nsp2601T601IaCaaTa11B.1.177.570.000281
ORF1ab/nsp2601T601IaCaaTa11B.1.177.600.000218
ORF1ab/nsp2601T601SAcaTca11B.1.177.600.000218
ORF1ab/nsp2601T601delACA---11B.1.177.620.001192
ORF1ab/nsp2601T601delACA---11B.1.177.830.001481
ORF1ab/nsp2601T601delACA---11B.1.177.90.001332
ORF1ab/nsp2601T601IaCaaTa11B.1.1790.003759
ORF1ab/nsp2601T601IaCaaTa11B.1.1870.033333
ORF1ab/nsp2601T601IaCaaTa11B.1.1880.016667
ORF1ab/nsp2601T601SAcaTca11B.1.20.000009
ORF1ab/nsp2601T601del2ACA--T11B.1.20.000009
ORF1ab/nsp2601T601IaCaaTa11B.1.2180.005155
ORF1ab/nsp2601T601IaCaaTa11B.1.3510.00003
ORF1ab/nsp2601T601TacAacT11B.1.351.30.000876
ORF1ab/nsp2601T601delACA---11B.1.360.000146
ORF1ab/nsp2601T601RaCAaGG11B.1.36.80.001
ORF1ab/nsp2601T601IaCaaTa11B.1.3670.000792
ORF1ab/nsp2601T601IaCaaTa11B.1.3720.010989
ORF1ab/nsp2601T601IaCaaTa11B.1.4290.000024
ORF1ab/nsp2601T601IaCaaTa11B.1.4370.020833
ORF1ab/nsp2601T601IaCaaTa11B.1.466.20.000391
ORF1ab/nsp2601T601IaCaaTa11B.1.4970.000315
ORF1ab/nsp2601T601AAcaGca11B.1.4970.000315
ORF1ab/nsp2601T601TacAacG11B.1.4970.000315
ORF1ab/nsp2601T601IaCaaTa11B.1.4990.00105
ORF1ab/nsp2601T601delACA---11B.1.5250.000113
ORF1ab/nsp2601T601delACA---11B.1.5610.000397
ORF1ab/nsp2601T601AAcaGca11B.1.5950.000261
ORF1ab/nsp2601T601IaCaaTa11B.1.5960.000087
ORF1ab/nsp2601T601delACA---11B.1.617.10.000129
ORF1ab/nsp2601T601IaCaaTa11B.1.617.10.000129
ORF1ab/nsp2601T601delACA---11B.1.617.20.000004
ORF1ab/nsp2601T601SAcATcT11B.1.617.20.000004
ORF1ab/nsp2601T601delACA---11B.1.617.30.002985
ORF1ab/nsp2601T601IaCaaTa11B.1.6200.000946
ORF1ab/nsp2601T601IaCaaTa11B.1.6210.000089
ORF1ab/nsp2601T601delACA---11B.1.621.10.000506
ORF1ab/nsp2601T601IaCaaTa11B.3.10.001658
ORF1ab/nsp2601T601delACA---11B.570.015152
ORF1ab/nsp2601T601AAcaGca11C.370.000116
ORF1ab/nsp2601T601delACA---11C.370.000116
ORF1ab/nsp2601T601TacAacG11P.10.000016
ORF1ab/nsp2601T601IaCaaTa11P.1.120.000484
ORF1ab/nsp2601T601IaCaaTa11Q.10.000126
ORF1ab/nsp2601T601TacAacG11Q.10.000126
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