CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 6 | V6V | V186V | syn | gtC | gtT | 25269 | 24793 | 0.981163 | 821-823 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 24793 | 25269 | All | 0.004742 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 12979 | 12987 | B.1.1.7 | 0.011619 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2097 | 2099 | AY.4 | 0.003264 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 424 | 735 | AY.44 | 0.002581 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 560 | 666 | B.1.617.2 | 0.002109 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 592 | 592 | B.1.258.17 | 0.061551 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 553 | 553 | B.1.2 | 0.004869 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 500 | 504 | AY.43 | 0.002215 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 432 | 434 | AY.103 | 0.002682 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 422 | 422 | AY.25 | 0.002538 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 418 | 419 | B.1.177 | 0.005504 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 401 | 401 | AY.108 | 0.442117 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 276 | 276 | AY.120 | 0.010261 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 191 | 191 | AY.26 | 0.005407 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 181 | 185 | B.1 | 0.001658 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 179 | 180 | AY.118 | 0.011214 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 167 | 179 | AY.3 | 0.001661 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 179 | 179 | B.1.1 | 0.003247 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 154 | 154 | B.1.243 | 0.010716 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 154 | 154 | P.1 | 0.002426 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 153 | 153 | B.1.1.285 | 1 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 132 | 132 | R.1 | 0.011881 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 131 | 131 | B.1.221.3 | 0.109167 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 130 | 130 | AA.2 | 1 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 127 | 127 | B.1.427 | 0.006413 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 102 | 102 | AY.102 | 0.002704 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 101 | 101 | Q.8 | 0.016656 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 92 | 92 | B.1.429 | 0.002165 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 92 | 92 | B.1.526 | 0.002162 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 78 | 78 | AY.39 | 0.001927 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 74 | 76 | AY.5 | 0.001528 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 76 | 76 | B.1.404 | 0.098958 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 75 | 75 | B.1.375 | 0.061475 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 64 | 64 | AY.6 | 0.002632 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 64 | 64 | B.1.177.21 | 0.004894 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 63 | 63 | B.1.444 | 1 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 57 | 58 | B.1.351 | 0.001694 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 55 | 55 | B.1.160 | 0.001715 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 53 | 53 | AY.4.2 | 0.00115 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 53 | 53 | B.1.160.8 | 0.068299 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 53 | 53 | B.1.177.4 | 0.011186 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 43 | 49 | AY.74 | 0.004973 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 45 | 45 | B.1.524 | 0.063291 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 41 | 41 | AY.42 | 0.001649 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 40 | 40 | AY.47 | 0.001244 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 38 | 38 | AY.100 | 0.001748 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 38 | 38 | AY.29 | 0.000599 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 37 | 37 | AY.40 | 0.03568 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 36 | 36 | AY.119 | 0.001271 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 36 | 36 | AY.23 | 0.002511 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 35 | 35 | AY.39.1 | 0.001386 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 35 | 35 | AY.4.5 | 0.003762 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 35 | 35 | B.1.517 | 0.014944 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 34 | 34 | AY.93 | 0.009285 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 34 | 34 | B.1.621 | 0.00301 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 33 | 33 | B.1.422 | 0.026807 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 32 | 32 | B.1.258 | 0.00213 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 32 | 32 | B.1.258.11 | 0.012683 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 32 | 32 | B.1.438.1 | 0.003432 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 31 | 31 | AY.110 | 0.003493 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 29 | 29 | AY.20 | 0.001127 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 29 | 29 | AY.27 | 0.001877 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 29 | 29 | B.1.351.3 | 0.025416 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 29 | 29 | C.36 | 0.026412 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 29 | 29 | Q.4 | 0.013188 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 25 | 25 | AY.3.1 | 0.002131 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 25 | 25 | C.37 | 0.002902 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 24 | 24 | B.1.311 | 0.00659 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 22 | 22 | B.1.351.2 | 0.006657 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 22 | 22 | P.1.14 | 0.001052 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 21 | 21 | AY.9 | 0.001419 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 21 | 21 | B.1.596 | 0.00183 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 21 | 21 | P.1.15 | 0.004879 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 17 | 19 | B.1.177.5 | 0.021118 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 19 | 19 | B.1.234 | 0.002507 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 18 | 18 | AY.61 | 0.001886 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 18 | 18 | B.1.1.519 | 0.000715 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 18 | 18 | B.1.139 | 0.013196 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 17 | 17 | AY.24 | 0.007328 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 17 | 17 | B.1.575 | 0.005158 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 16 | 16 | AY.46 | 0.001665 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 16 | 16 | AY.75 | 0.000896 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 15 | 15 | AY.106 | 0.005023 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 15 | 15 | AY.45 | 0.001825 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 14 | 14 | AY.36 | 0.002075 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 14 | 14 | AY.98.1 | 0.000678 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 14 | 14 | B.1.36.18 | 0.005882 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 14 | 14 | B.1.637 | 0.001023 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 13 | 13 | AY.99.2 | 0.001198 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 13 | 13 | B.1.214.2 | 0.007794 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 12 | 12 | AY.33 | 0.000801 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 10 | 12 | AY.46.6 | 0.000722 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 12 | 12 | AY.98 | 0.000948 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 12 | 12 | B.1.1.416 | 0.01086 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 11 | 12 | B.1.623 | 0.005901 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 11 | 11 | AD.2 | 0.002409 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 11 | 11 | AY.54 | 0.001049 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 11 | 11 | B.1.1.244 | 0.169231 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 11 | 11 | B.1.177.15 | 0.00694 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 11 | 11 | B.1.221 | 0.000781 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 11 | 11 | B.1.400 | 0.004719 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 10 | 10 | B.1.525 | 0.001132 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 9 | 9 | AY.117 | 0.000761 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 8 | 9 | AY.35 | 0.001864 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 9 | 9 | AY.75.1 | 0.001623 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 8 | 9 | B | 0.001022 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 9 | 9 | C.35 | 0.006966 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 8 | 8 | AY.92 | 0.002298 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 8 | 8 | P.1.1 | 0.002541 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 8 | 8 | Q.2 | 0.004908 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 7 | 7 | A.2.5 | 0.003493 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 7 | 7 | AY.53 | 0.002013 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 7 | 7 | B.1.1.370 | 0.088608 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 7 | 7 | B.1.1.397 | 0.015766 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 7 | 7 | B.1.567 | 0.023333 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 5 | AY.52 | 0.003257 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | B.1.1.277 | 0.003794 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 5 | B.1.1.284 | 0.00043 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | B.1.1.289 | 0.010417 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | B.1.1.311 | 0.001791 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | B.1.160.16 | 0.004647 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | B.1.160.27 | 0.075758 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | B.1.160.31 | 0.040323 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | B.1.241 | 0.004058 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | B.1.336 | 0.012195 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | B.1.35 | 0.042373 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 5 | 5 | P.3 | 0.007974 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | AE.6 | 0.153846 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | AY.10 | 0.00212 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 4 | AY.111 | 0.000366 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | AY.4.3 | 0.003367 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.1.14 | 0.068966 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.1.354 | 0.017544 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.1.422 | 0.181818 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.119 | 0.042105 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.177.27 | 0.037736 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.232 | 0.002149 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.236 | 0.008214 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.260 | 0.013378 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.416 | 0.005076 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.499 | 0.004202 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.509 | 0.003463 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.587 | 0.00759 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | B.1.596.1 | 0.037383 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.120.2 | 0.003856 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.23.1 | 0.001252 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 3 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.51 | 0.002727 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 3 | AY.62 | 0.000871 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.7.2 | 0.001678 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.86 | 0.00249 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.1.192 | 0.006928 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.1.464 | 0.004418 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.177.32 | 0.004049 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.247 | 0.044776 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.279 | 0.001541 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.337 | 0.01676 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 2 | A | 0.000387 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AM.4 | 0.007143 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.1.232 | 0.00363 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.1.362 | 0.011236 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.1.413 | 0.013793 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.177.31 | 0.022989 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | B.1.9 | 0.012346 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.5.1 | 0.003759 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.40 | 0.034483 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.459 | 0.015385 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.463 | 0.0625 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.160.10 | 0.008065 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.160.25 | 0.011111 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.258.23 | 0.02381 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.36.2 | 0.010753 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.478 | 0.011765 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.486 | 0.111111 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.488 | 0.2 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.507 | 0.011236 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.47 | 0.020408 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | G.1 | 0.041667 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | K.1 | 0.02381 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | S.1 | 0.00495 |
ORF1ab/nsp2 | 6 | V6V | gtC | gtT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|