CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 597

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2597P597PP777PsynccAccG503543690.8677262594-2596
ORF1ab/nsp2597P597PP777PsynccAccC50356330.125722594-2596
ORF1ab/nsp2597P597PP777PsynccAccT5035330.006554122594-2596
ORF1ab/nsp2597P597SP777SnonsynCcaTca105810560.998112594-2596
ORF1ab/nsp2597P597SP777SnonsynCcATcC105810.000945182594-2596
ORF1ab/nsp2597P597SP777SnonsynCcATcT105810.000945182594-2596
ORF1ab/nsp2597P597LP777LnonsyncCacTa4614550.9869852594-2596
ORF1ab/nsp2597P597LP777LnonsynCCaTTa46130.006507592594-2596
ORF1ab/nsp2597P597LP777LnonsyncCAcTG46110.00216922594-2596
ORF1ab/nsp2597P597LP777LnonsyncCAcTC46110.00216922594-2596
ORF1ab/nsp2597P597LP777LnonsyncCAcTT46110.00216922594-2596
ORF1ab/nsp2597P597delP777deldelCCA---12412412594-2596
ORF1ab/nsp2597P597TP777TnonsynCcaAca52490.9423082594-2596
ORF1ab/nsp2597P597TP777TnonsynCcAAcT5220.03846152594-2596
ORF1ab/nsp2597P597TP777TnonsynCcAAcC5210.01923082594-2596
ORF1ab/nsp2597P597QP777QnonsyncCacAa353512594-2596
ORF1ab/nsp2597P597AP777AnonsynCcaGca18160.8888892594-2596
ORF1ab/nsp2597P597AP777AnonsynCcAGcT1810.05555562594-2596
ORF1ab/nsp2597P597AP777AnonsynCcAGcG1810.05555562594-2596
ORF1ab/nsp2597P597del2P777del2delcCAc--520.42594-2596
ORF1ab/nsp2597P597del2P777del2delCCa--a510.22594-2596
ORF1ab/nsp2597P597del2P777del2delCCA--N510.22594-2596
ORF1ab/nsp2597P597del2P777del2delCCAT--510.22594-2596
ORF1ab/nsp2597P597HP777HnonsyncCAcAT3312594-2596
ORF1ab/nsp2597P597del1P777del1delCca-ca320.6666672594-2596
ORF1ab/nsp2597P597del1P777del1delCCA-NN310.3333332594-2596
ORF1ab/nsp2597P597DP777DnonsynCCAGAT2212594-2596
ORF1ab/nsp2597P597EP777EnonsynCCaGAa2212594-2596
ORF1ab/nsp2597P597KP777KnonsynCCaAAa1112594-2596
ORF1ab/nsp2597P597FP777FnonsynCCATTC1112594-2596

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2597P597PccAccG43695035All0.000836
ORF1ab/nsp2597P597PccAccC6335035All0.000121
ORF1ab/nsp2597P597PccAccT335035All0.000006
ORF1ab/nsp2597P597PccAccG38743874P.1.150.900093
ORF1ab/nsp2597P597SCcaTca10561058All0.000202
ORF1ab/nsp2597P597SCcATcT11058All0
ORF1ab/nsp2597P597SCcATcC11058All0
ORF1ab/nsp2597P597PccAccC610644B.1.1.70.000546
ORF1ab/nsp2597P597PccAccT22644B.1.1.70.00002
ORF1ab/nsp2597P597PccAccG12644B.1.1.70.000011
ORF1ab/nsp2597P597LcCacTa455461All0.000087
ORF1ab/nsp2597P597LCCaTTa3461All0.000001
ORF1ab/nsp2597P597LcCAcTG1461All0
ORF1ab/nsp2597P597LcCAcTC1461All0
ORF1ab/nsp2597P597LcCAcTT1461All0
ORF1ab/nsp2597P597SCcaTca380380AY.40.000591
ORF1ab/nsp2597P597LcCacTa125126B.1.1.70.000112
ORF1ab/nsp2597P597LCCaTTa1126B.1.1.70.000001
ORF1ab/nsp2597P597delCCA---124124All0.000024
ORF1ab/nsp2597P597SCcaTca110110B.1.617.20.000414
ORF1ab/nsp2597P597LcCacTa9090AY.250.000541
ORF1ab/nsp2597P597SCcaTca7980AY.430.00035
ORF1ab/nsp2597P597SCcATcC180AY.430.000004
ORF1ab/nsp2597P597SCcaTca7777B.1.1.70.000069
ORF1ab/nsp2597P597PccAccG7071P.10.001103
ORF1ab/nsp2597P597PccAccC171P.10.000016
ORF1ab/nsp2597P597TCcaAca4952All0.000009
ORF1ab/nsp2597P597TCcAAcT252All0
ORF1ab/nsp2597P597TCcAAcC152All0
ORF1ab/nsp2597P597PccAccG4851AY.430.000213
ORF1ab/nsp2597P597PccAccC251AY.430.000009
ORF1ab/nsp2597P597PccAccT151AY.430.000004
ORF1ab/nsp2597P597PccAccG4851B.1.617.20.000181
ORF1ab/nsp2597P597PccAccT351B.1.617.20.000011
ORF1ab/nsp2597P597LcCacTa4848AY.40.000075
ORF1ab/nsp2597P597PccAccG4646AY.60.001892
ORF1ab/nsp2597P597PccAccG3940AY.330.002604
ORF1ab/nsp2597P597PccAccT140AY.330.000067
ORF1ab/nsp2597P597SCcaTca3838B.1.6090.018217
ORF1ab/nsp2597P597SCcaTca3737AY.39.10.001466
ORF1ab/nsp2597P597QcCacAa3535All0.000007
ORF1ab/nsp2597P597PccAccG2527AY.1030.000155
ORF1ab/nsp2597P597PccAccC227AY.1030.000012
ORF1ab/nsp2597P597delCCA---2626B.1.1.70.000023
ORF1ab/nsp2597P597PccAccG1925AY.440.000116
ORF1ab/nsp2597P597PccAccC425AY.440.000024
ORF1ab/nsp2597P597PccAccT225AY.440.000012
ORF1ab/nsp2597P597SCcaTca2121B.1.177.810.003976
ORF1ab/nsp2597P597TCcaAca1919AY.40.00003
ORF1ab/nsp2597P597PccAccG1819B.10.000165
ORF1ab/nsp2597P597PccAccC119B.10.000009
ORF1ab/nsp2597P597ACcaGca1618All0.000003
ORF1ab/nsp2597P597ACcAGcG118All0
ORF1ab/nsp2597P597ACcAGcT118All0
ORF1ab/nsp2597P597SCcaTca1717B.1.20.00015
ORF1ab/nsp2597P597LcCacTa1717B.1.617.20.000064
ORF1ab/nsp2597P597PccAccG1717C.370.001973
ORF1ab/nsp2597P597SCcaTca1717P.10.000268
ORF1ab/nsp2597P597SCcaTca1616B.1.10.00029
ORF1ab/nsp2597P597LcCacTa1315AY.430.000058
ORF1ab/nsp2597P597LcCAcTC115AY.430.000004
ORF1ab/nsp2597P597LCCaTTa115AY.430.000004
ORF1ab/nsp2597P597LcCacTa1414AY.116.10.00436
ORF1ab/nsp2597P597SCcaTca1414AY.30.000139
ORF1ab/nsp2597P597SCcaTca1313AY.610.001362
ORF1ab/nsp2597P597SCcaTca1212AY.1020.000318
ORF1ab/nsp2597P597PccAccG1212AY.250.000072
ORF1ab/nsp2597P597LcCacTa1212AY.440.000073
ORF1ab/nsp2597P597delCCA---1212B.10.00011
ORF1ab/nsp2597P597SCcaTca1212B.1.438.10.001287
ORF1ab/nsp2597P597SCcaTca1111AY.1030.000068
ORF1ab/nsp2597P597PccAccG711AY.40.000011
ORF1ab/nsp2597P597PccAccC411AY.40.000006
ORF1ab/nsp2597P597PccAccG1011B.1.10.000181
ORF1ab/nsp2597P597PccAccC111B.1.10.000018
ORF1ab/nsp2597P597LcCacTa1011B.1.3510.000297
ORF1ab/nsp2597P597LcCAcTT111B.1.3510.00003
ORF1ab/nsp2597P597LcCacTa1010AY.1030.000062
ORF1ab/nsp2597P597TCcaAca1010AY.430.000044
ORF1ab/nsp2597P597LcCacTa1010B.1.6190.008711
ORF1ab/nsp2597P597PccAccG99AE.30.290323
ORF1ab/nsp2597P597PccAccG99AY.1020.000239
ORF1ab/nsp2597P597SCcaTca99AY.920.002585
ORF1ab/nsp2597P597SCcaTca99B.1.1.5190.000357
ORF1ab/nsp2597P597delCCA---99B.1.1770.000119
ORF1ab/nsp2597P597SCcaTca88AY.390.000198
ORF1ab/nsp2597P597SCcaTca88AY.440.000049
ORF1ab/nsp2597P597SCcaTca88AY.50.000165
ORF1ab/nsp2597P597SCcaTca88B.10.000073
ORF1ab/nsp2597P597PccAccG77AY.1000.000322
ORF1ab/nsp2597P597QcCacAa77AY.1190.000247
ORF1ab/nsp2597P597SCcaTca77AY.250.000042
ORF1ab/nsp2597P597LcCacTa77AY.30.00007
ORF1ab/nsp2597P597SCcaTca77AY.460.000729
ORF1ab/nsp2597P597QcCacAa77B.1.1.70.000006
ORF1ab/nsp2597P597SCcaTca77B.1.1770.000092
ORF1ab/nsp2597P597LcCacTa77B.1.5260.000165
ORF1ab/nsp2597P597SCcaTca77B.1.5960.00061
ORF1ab/nsp2597P597LcCacTa66AY.29.10.001323
ORF1ab/nsp2597P597PccAccG46AY.390.000099
ORF1ab/nsp2597P597PccAccC26AY.390.000049
ORF1ab/nsp2597P597ACcaGca66B.10.000055
ORF1ab/nsp2597P597LcCacTa66B.1.177.530.014354
ORF1ab/nsp2597P597del2cCAc--25All0
ORF1ab/nsp2597P597del2CCa--a15All0
ORF1ab/nsp2597P597del2CCAT--15All0
ORF1ab/nsp2597P597del2CCA--N15All0
ORF1ab/nsp2597P597PccAccG55AY.1190.000177
ORF1ab/nsp2597P597PccAccC45AY.260.000113
ORF1ab/nsp2597P597PccAccG15AY.260.000028
ORF1ab/nsp2597P597PccAccG55AY.9.20.000184
ORF1ab/nsp2597P597PccAccG55AY.98.10.000242
ORF1ab/nsp2597P597delCCA---55B.1.10.000091
ORF1ab/nsp2597P597PccAccG55B.1.1770.000066
ORF1ab/nsp2597P597delCCA---55B.1.20.000044
ORF1ab/nsp2597P597SCcaTca55B.1.6200.00473
ORF1ab/nsp2597P597delCCA---55P.10.000079
ORF1ab/nsp2597P597PccAccG55P.1.160.001871
ORF1ab/nsp2597P597delCCA---440.222222
ORF1ab/nsp2597P597SCcaTca44AY.330.000267
ORF1ab/nsp2597P597TCcaAca44B.10.000037
ORF1ab/nsp2597P597PccAccG44B.1.1.4340.001394
ORF1ab/nsp2597P597SCcaTca44B.1.2370.0199
ORF1ab/nsp2597P597PccAccG44B.1.2410.003247
ORF1ab/nsp2597P597SCcaTca44B.1.4270.000202
ORF1ab/nsp2597P597SCcaTca44B.1.5250.000453
ORF1ab/nsp2597P597LcCacTa44B.1.5250.000453
ORF1ab/nsp2597P597QcCacAa44P.10.000063
ORF1ab/nsp2597P597HcCAcAT33All0.000001
ORF1ab/nsp2597P597del1Cca-ca23All0
ORF1ab/nsp2597P597del1CCA-NN13All0
ORF1ab/nsp2597P597SCcaTca33AY.1000.000138
ORF1ab/nsp2597P597SCcaTca33AY.1180.000188
ORF1ab/nsp2597P597LcCacTa33AY.1180.000188
ORF1ab/nsp2597P597LcCacTa33AY.20.001068
ORF1ab/nsp2597P597LcCacTa33AY.260.000085
ORF1ab/nsp2597P597PccAccG33AY.540.000286
ORF1ab/nsp2597P597SCcaTca23AY.550.001835
ORF1ab/nsp2597P597SCcATcT13AY.550.000917
ORF1ab/nsp2597P597LcCacTa33B.10.000027
ORF1ab/nsp2597P597SCcaTca33B.1.1.2140.000166
ORF1ab/nsp2597P597LcCacTa33B.1.1.2940.003797
ORF1ab/nsp2597P597delCCA---33B.1.1.330.001263
ORF1ab/nsp2597P597delCCA---33B.1.1.3480.002389
ORF1ab/nsp2597P597PccAccG33B.1.1.4480.006098
ORF1ab/nsp2597P597PccAccG33B.1.1.5190.000119
ORF1ab/nsp2597P597SCcaTca33B.1.110.30.002155
ORF1ab/nsp2597P597TCcaAca33B.1.110.30.002155
ORF1ab/nsp2597P597SCcaTca33B.1.1600.000094
ORF1ab/nsp2597P597LcCacTa33B.1.1770.00004
ORF1ab/nsp2597P597QcCacAa33B.1.20.000026
ORF1ab/nsp2597P597PccAccG33B.1.20.000026
ORF1ab/nsp2597P597PccAccG33B.1.2430.000209
ORF1ab/nsp2597P597LcCacTa33B.1.2430.000209
ORF1ab/nsp2597P597PccAccG33B.1.2580.0002
ORF1ab/nsp2597P597SCcaTca33B.1.3510.000089
ORF1ab/nsp2597P597PccAccC23B.1.3510.000059
ORF1ab/nsp2597P597PccAccG13B.1.3510.00003
ORF1ab/nsp2597P597delCCA---33B.1.4290.000071
ORF1ab/nsp2597P597LcCacTa33B.1.4290.000071
ORF1ab/nsp2597P597LcCacTa33B.1.466.20.001174
ORF1ab/nsp2597P597SCcaTca33D.20.000225
ORF1ab/nsp2597P597TCcAAcT220.111111
ORF1ab/nsp2597P597ECCaGAa22All0
ORF1ab/nsp2597P597DCCAGAT22All0
ORF1ab/nsp2597P597SCcaTca22AY.1080.002205
ORF1ab/nsp2597P597PccAccG12AY.1200.000037
ORF1ab/nsp2597P597PccAccT12AY.1200.000037
ORF1ab/nsp2597P597SCcaTca22AY.20.000712
ORF1ab/nsp2597P597SCcaTca22AY.200.000078
ORF1ab/nsp2597P597PccAccG22AY.200.000078
ORF1ab/nsp2597P597SCcaTca22AY.230.000139
ORF1ab/nsp2597P597QcCacAa22AY.250.000012
ORF1ab/nsp2597P597SCcaTca22AY.260.000057
ORF1ab/nsp2597P597SCcaTca22AY.290.000032
ORF1ab/nsp2597P597PccAccG22AY.30.00002
ORF1ab/nsp2597P597TCcaAca22AY.39.10.000079
ORF1ab/nsp2597P597PccAccG22AY.4.50.000215
ORF1ab/nsp2597P597ECCaGAa22AY.430.000009
ORF1ab/nsp2597P597DCCAGAT22AY.430.000009
ORF1ab/nsp2597P597ACcAGcT12AY.430.000004
ORF1ab/nsp2597P597ACcaGca12AY.430.000004
ORF1ab/nsp2597P597SCcaTca22AY.470.000062
ORF1ab/nsp2597P597QcCacAa22AY.470.000062
ORF1ab/nsp2597P597SCcaTca22AY.500.001599
ORF1ab/nsp2597P597PccAccG22AY.620.000871
ORF1ab/nsp2597P597SCcaTca22AY.730.001331
ORF1ab/nsp2597P597SCcaTca22AY.840.000875
ORF1ab/nsp2597P597SCcaTca22AY.9.10.000167
ORF1ab/nsp2597P597PccAccG22AY.99.20.000184
ORF1ab/nsp2597P597LcCacTa22B.1.10.000036
ORF1ab/nsp2597P597ACcaGca22B.1.1.280.000622
ORF1ab/nsp2597P597SCcaTca22B.1.1.3090.011696
ORF1ab/nsp2597P597delCCA---22B.1.1.3150.016949
ORF1ab/nsp2597P597delCCA---22B.1.1.460.008734
ORF1ab/nsp2597P597SCcaTca22B.1.1.4670.038462
ORF1ab/nsp2597P597delCCA---22B.1.1.5170.013605
ORF1ab/nsp2597P597SCcaTca22B.1.1.5260.007092
ORF1ab/nsp2597P597ACcAGcG12B.1.1.70.000001
ORF1ab/nsp2597P597ACcaGca12B.1.1.70.000001
ORF1ab/nsp2597P597SCcaTca22B.1.177.160.001329
ORF1ab/nsp2597P597LcCacTa22B.1.20.000018
ORF1ab/nsp2597P597SCcaTca22B.1.36.290.001035
ORF1ab/nsp2597P597PccAccG22B.1.36.70.008
ORF1ab/nsp2597P597delCCA---22B.1.4240.016129
ORF1ab/nsp2597P597SCcaTca22B.1.4290.000047
ORF1ab/nsp2597P597TCcaAca22B.1.4290.000047
ORF1ab/nsp2597P597delCCA---22B.1.5260.000047
ORF1ab/nsp2597P597SCcaTca22B.1.5820.000981
ORF1ab/nsp2597P597LcCacTa22B.1.5960.000174
ORF1ab/nsp2597P597delCCA---22B.1.6210.000177
ORF1ab/nsp2597P597SCcaTca22B.1.6210.000177
ORF1ab/nsp2597P597SCcaTca22B.1.6230.001073
ORF1ab/nsp2597P597PccAccG22C.350.001548
ORF1ab/nsp2597P597ACcaGca22C.360.001821
ORF1ab/nsp2597P597delCCA---22C.370.000232
ORF1ab/nsp2597P597delCCA---22N.60.014184
ORF1ab/nsp2597P597delCCA---22P.1.150.000465
ORF1ab/nsp2597P597TCcaAca11A0.000387
ORF1ab/nsp2597P597SCcaTca11A0.000387
ORF1ab/nsp2597P597TCcAAcC11A.10.000282
ORF1ab/nsp2597P597SCcaTca11A.20.000662
ORF1ab/nsp2597P597PccAccG11AD.20.000219
ORF1ab/nsp2597P597FCCATTC11All0
ORF1ab/nsp2597P597KCCaAAa11All0
ORF1ab/nsp2597P597SCcaTca11AV.10.005051
ORF1ab/nsp2597P597LcCacTa11AY.1000.000046
ORF1ab/nsp2597P597QcCacAa11AY.1030.000006
ORF1ab/nsp2597P597PccAccG11AY.1050.000643
ORF1ab/nsp2597P597LcCacTa11AY.1070.000466
ORF1ab/nsp2597P597delCCA---11AY.1080.001103
ORF1ab/nsp2597P597PccAccG11AY.1160.000287
ORF1ab/nsp2597P597delCCA---11AY.1180.000063
ORF1ab/nsp2597P597LcCacTa11AY.1200.000037
ORF1ab/nsp2597P597SCcaTca11AY.1200.000037
ORF1ab/nsp2597P597LcCacTa11AY.1210.000135
ORF1ab/nsp2597P597SCcaTca11AY.1210.000135
ORF1ab/nsp2597P597SCcaTca11AY.140.000088
ORF1ab/nsp2597P597PccAccG11AY.140.000088
ORF1ab/nsp2597P597SCcaTca11AY.16.10.00047
ORF1ab/nsp2597P597LcCacTa11AY.190.00114
ORF1ab/nsp2597P597ACcaGca11AY.200.000039
ORF1ab/nsp2597P597LcCacTa11AY.270.000065
ORF1ab/nsp2597P597QcCacAa11AY.290.000016
ORF1ab/nsp2597P597PccAccG11AY.290.000016
ORF1ab/nsp2597P597ACcaGca11AY.30.00001
ORF1ab/nsp2597P597PccAccG11AY.3.10.000085
ORF1ab/nsp2597P597LcCacTa11AY.330.000067
ORF1ab/nsp2597P597LcCacTa11AY.340.000097
ORF1ab/nsp2597P597QcCacAa11AY.390.000025
ORF1ab/nsp2597P597PccAccG11AY.39.10.00004
ORF1ab/nsp2597P597QcCacAa11AY.40.000002
ORF1ab/nsp2597P597delCCA---11AY.40.000002
ORF1ab/nsp2597P597LcCacTa11AY.4.20.000022
ORF1ab/nsp2597P597SCcaTca11AY.4.20.000022
ORF1ab/nsp2597P597PccAccG11AY.4.20.000022
ORF1ab/nsp2597P597PccAccG11AY.4.2.10.000149
ORF1ab/nsp2597P597SCcaTca11AY.4.2.10.000149
ORF1ab/nsp2597P597SCcaTca11AY.4.40.000409
ORF1ab/nsp2597P597delCCA---11AY.4.50.000107
ORF1ab/nsp2597P597delCCA---11AY.400.000964
ORF1ab/nsp2597P597TCcaAca11AY.420.00004
ORF1ab/nsp2597P597delCCA---11AY.420.00004
ORF1ab/nsp2597P597SCcaTca11AY.420.00004
ORF1ab/nsp2597P597PccAccG11AY.420.00004
ORF1ab/nsp2597P597QcCacAa11AY.430.000004
ORF1ab/nsp2597P597FCCATTC11AY.430.000004
ORF1ab/nsp2597P597HcCAcAT11AY.430.000004
ORF1ab/nsp2597P597HcCAcAT11AY.440.000006
ORF1ab/nsp2597P597PccAccG11AY.450.000122
ORF1ab/nsp2597P597LcCacTa11AY.460.000104
ORF1ab/nsp2597P597LcCacTa11AY.46.20.000635
ORF1ab/nsp2597P597SCcaTca11AY.46.50.000198
ORF1ab/nsp2597P597PccAccG11AY.470.000031
ORF1ab/nsp2597P597LcCacTa11AY.470.000031
ORF1ab/nsp2597P597LcCacTa11AY.50.000021
ORF1ab/nsp2597P597LcCacTa11AY.5.20.002463
ORF1ab/nsp2597P597SCcaTca11AY.5.40.000277
ORF1ab/nsp2597P597TCcaAca11AY.520.000814
ORF1ab/nsp2597P597SCcaTca11AY.540.000095
ORF1ab/nsp2597P597PccAccG11AY.550.000917
ORF1ab/nsp2597P597delCCA---11AY.60.000041
ORF1ab/nsp2597P597LcCacTa11AY.610.000105
ORF1ab/nsp2597P597ACcaGca11AY.670.000464
ORF1ab/nsp2597P597delCCA---11AY.680.000274
ORF1ab/nsp2597P597LcCacTa11AY.690.000187
ORF1ab/nsp2597P597LcCacTa11AY.7.10.000113
ORF1ab/nsp2597P597delCCA---11AY.7.20.000559
ORF1ab/nsp2597P597LcCacTa11AY.700.000209
ORF1ab/nsp2597P597SCcaTca11AY.710.000475
ORF1ab/nsp2597P597delCCA---11AY.730.000665
ORF1ab/nsp2597P597PccAccG11AY.750.000056
ORF1ab/nsp2597P597delCCA---11AY.75.10.00018
ORF1ab/nsp2597P597del2cCAc--11AY.9.20.000037
ORF1ab/nsp2597P597LcCacTa11AY.9.20.000037
ORF1ab/nsp2597P597SCcaTca11AY.9.20.000037
ORF1ab/nsp2597P597LcCacTa11AY.980.000079
ORF1ab/nsp2597P597SCcaTca11AY.98.10.000048
ORF1ab/nsp2597P597delCCA---11AY.98.10.000048
ORF1ab/nsp2597P597TCcaAca11B0.000128
ORF1ab/nsp2597P597del1Cca-ca11B.10.000009
ORF1ab/nsp2597P597QcCacAa11B.1.10.000018
ORF1ab/nsp2597P597KCCaAAa11B.1.10.000018
ORF1ab/nsp2597P597PccAccG11B.1.1.10.000327
ORF1ab/nsp2597P597PccAccT11B.1.1.100.001115
ORF1ab/nsp2597P597SCcaTca11B.1.1.100.001115
ORF1ab/nsp2597P597delCCA---11B.1.1.1390.022727
ORF1ab/nsp2597P597LcCacTa11B.1.1.1700.001247
ORF1ab/nsp2597P597delCCA---11B.1.1.1970.037037
ORF1ab/nsp2597P597LcCacTa11B.1.1.2140.000055
ORF1ab/nsp2597P597SCcaTca11B.1.1.2220.000204
ORF1ab/nsp2597P597LcCacTa11B.1.1.2220.000204
ORF1ab/nsp2597P597SCcaTca11B.1.1.2360.006897
ORF1ab/nsp2597P597LcCacTa11B.1.1.2730.006757
ORF1ab/nsp2597P597SCcaTca11B.1.1.280.000311
ORF1ab/nsp2597P597PccAccG11B.1.1.3060.000438
ORF1ab/nsp2597P597SCcaTca11B.1.1.3170.000412
ORF1ab/nsp2597P597SCcaTca11B.1.1.3180.000302
ORF1ab/nsp2597P597SCcaTca11B.1.1.3480.000796
ORF1ab/nsp2597P597PccAccG11B.1.1.3980.003226
ORF1ab/nsp2597P597SCcaTca11B.1.1.40.002976
ORF1ab/nsp2597P597delCCA---11B.1.1.4160.000905
ORF1ab/nsp2597P597delCCA---11B.1.1.4480.002033
ORF1ab/nsp2597P597del1CCA-NN11B.1.1.70.000001
ORF1ab/nsp2597P597del2CCAT--11B.1.1.70.000001
ORF1ab/nsp2597P597delCCA---11B.1.1.700.000341
ORF1ab/nsp2597P597LcCacTa11B.1.1390.000733
ORF1ab/nsp2597P597delCCA---11B.1.1400.018868
ORF1ab/nsp2597P597TCcaAca11B.1.1570.002985
ORF1ab/nsp2597P597delCCA---11B.1.1600.000031
ORF1ab/nsp2597P597SCcaTca11B.1.160.290.004219
ORF1ab/nsp2597P597QcCacAa11B.1.1770.000013
ORF1ab/nsp2597P597SCcaTca11B.1.177.600.000218
ORF1ab/nsp2597P597delCCA---11B.1.177.620.001192
ORF1ab/nsp2597P597LcCacTa11B.1.177.730.000566
ORF1ab/nsp2597P597PccAccG11B.1.177.810.000189
ORF1ab/nsp2597P597delCCA---11B.1.177.830.001481
ORF1ab/nsp2597P597del1Cca-ca11B.1.20.000009
ORF1ab/nsp2597P597TCcaAca11B.1.20.000009
ORF1ab/nsp2597P597LcCacTa11B.1.2210.000071
ORF1ab/nsp2597P597PccAccG11B.1.2210.000071
ORF1ab/nsp2597P597SCcaTca11B.1.2340.000132
ORF1ab/nsp2597P597LcCacTa11B.1.2350.002519
ORF1ab/nsp2597P597SCcaTca11B.1.2430.00007
ORF1ab/nsp2597P597LcCacTa11B.1.243.10.022222
ORF1ab/nsp2597P597SCcaTca11B.1.3190.003049
ORF1ab/nsp2597P597LcCacTa11B.1.3200.001245
ORF1ab/nsp2597P597PccAccT11B.1.3490.000715
ORF1ab/nsp2597P597LcCacTa11B.1.3490.000715
ORF1ab/nsp2597P597ACcaGca11B.1.3510.00003
ORF1ab/nsp2597P597SCcaTca11B.1.3570.009524
ORF1ab/nsp2597P597delCCA---11B.1.360.000146
ORF1ab/nsp2597P597SCcaTca11B.1.360.000146
ORF1ab/nsp2597P597LcCacTa11B.1.36.290.000517
ORF1ab/nsp2597P597LCCaTTa11B.1.36.80.001
ORF1ab/nsp2597P597PccAccG11B.1.3890.001002
ORF1ab/nsp2597P597PccAccG11B.1.3980.002976
ORF1ab/nsp2597P597LcCacTa11B.1.4260.001009
ORF1ab/nsp2597P597del2CCa--a11B.1.4590.004082
ORF1ab/nsp2597P597SCcaTca11B.1.4970.000315
ORF1ab/nsp2597P597PccAccT11B.1.4970.000315
ORF1ab/nsp2597P597SCcaTca11B.1.5170.000427
ORF1ab/nsp2597P597LcCacTa11B.1.5170.000427
ORF1ab/nsp2597P597delCCA---11B.1.5250.000113
ORF1ab/nsp2597P597PccAccG11B.1.5260.000024
ORF1ab/nsp2597P597SCcaTca11B.1.5400.009709
ORF1ab/nsp2597P597delCCA---11B.1.5510.00129
ORF1ab/nsp2597P597SCcaTca11B.1.5600.00463
ORF1ab/nsp2597P597delCCA---11B.1.5610.000397
ORF1ab/nsp2597P597LcCacTa11B.1.5650.00081
ORF1ab/nsp2597P597SCcaTca11B.1.5740.002151
ORF1ab/nsp2597P597LcCacTa11B.1.5950.000261
ORF1ab/nsp2597P597QcCacAa11B.1.5960.000087
ORF1ab/nsp2597P597LcCacTa11B.1.6090.000479
ORF1ab/nsp2597P597delCCA---11B.1.617.10.000129
ORF1ab/nsp2597P597delCCA---11B.1.617.20.000004
ORF1ab/nsp2597P597QcCacAa11B.1.617.20.000004
ORF1ab/nsp2597P597del2cCAc--11B.1.617.20.000004
ORF1ab/nsp2597P597HcCAcAT11B.1.617.20.000004
ORF1ab/nsp2597P597TCcaAca11B.1.617.20.000004
ORF1ab/nsp2597P597delCCA---11B.1.617.30.002985
ORF1ab/nsp2597P597del2CCA--N11B.1.6210.000089
ORF1ab/nsp2597P597SCcaTca11B.1.621.10.000506
ORF1ab/nsp2597P597delCCA---11B.1.621.10.000506
ORF1ab/nsp2597P597TCcaAca11B.1.6230.000536
ORF1ab/nsp2597P597LcCacTa11B.1.6230.000536
ORF1ab/nsp2597P597LcCacTa11B.1.6290.013333
ORF1ab/nsp2597P597delCCA---11B.570.015152
ORF1ab/nsp2597P597SCcaTca11C.310.017857
ORF1ab/nsp2597P597PccAccG11C.37.10.002618
ORF1ab/nsp2597P597PccAccG11D.20.000075
ORF1ab/nsp2597P597PccAccG11N.50.001767
ORF1ab/nsp2597P597TCcaAca11P.10.000016
ORF1ab/nsp2597P597LcCacTa11P.10.000016
ORF1ab/nsp2597P597PccAccG11P.1.130.000898
ORF1ab/nsp2597P597LcCAcTG11P.1.150.000232
ORF1ab/nsp2597P597LcCacTa11P.1.170.000162
ORF1ab/nsp2597P597SCcaTca11P.1.70.000319
ORF1ab/nsp2597P597LcCacTa11P.20.000187
ORF1ab/nsp2597P597QcCacAa11P.70.004367
ORF1ab/nsp2597P597delCCA---11Q.10.000126
ORF1ab/nsp2597P597PccAccG11Q.70.001111
ORF1ab/nsp2597P597LcCacTa11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.