CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 596

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2596A596VA776VnonsyngCtgTt120712050.9983432591-2593
ORF1ab/nsp2596A596VA776VnonsyngCTgTC120720.0016572591-2593
ORF1ab/nsp2596A596DA776DnonsyngCtgAt94194112591-2593
ORF1ab/nsp2596A596AA776AsyngcTgcC9026450.7150782591-2593
ORF1ab/nsp2596A596AA776AsyngcTgcA9021840.2039912591-2593
ORF1ab/nsp2596A596AA776AsyngcTgcG902730.08093132591-2593
ORF1ab/nsp2596A596TA776TnonsynGctAct6486470.9984572591-2593
ORF1ab/nsp2596A596TA776TnonsynGcTAcA64810.001543212591-2593
ORF1ab/nsp2596A596SA776SnonsynGctTct20120112591-2593
ORF1ab/nsp2596A596delA776deldelGCT---12412412591-2593
ORF1ab/nsp2596A596PA776PnonsynGctCct262612591-2593
ORF1ab/nsp2596A596GA776GnonsyngCtgGt161612591-2593
ORF1ab/nsp2596A596NA776NnonsynGCtAAt111112591-2593
ORF1ab/nsp2596A596YA776YnonsynGCtTAt111112591-2593
ORF1ab/nsp2596A596CA776CnonsynGCtTGt101012591-2593
ORF1ab/nsp2596A596del1A776del1delgcTgc-860.752591-2593
ORF1ab/nsp2596A596del1A776del1delGct-ct810.1252591-2593
ORF1ab/nsp2596A596del1A776del1delgCtg-t810.1252591-2593
ORF1ab/nsp2596A596FA776FnonsynGCtTTt3312591-2593
ORF1ab/nsp2596A596IA776InonsynGCtATt2212591-2593
ORF1ab/nsp2596A596LA776LnonsynGCTCTC1112591-2593
ORF1ab/nsp2596A596EA776EnonsyngCTgAG1112591-2593

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2596A596VgCtgTt12051207All0.00023
ORF1ab/nsp2596A596VgCTgTC21207All0
ORF1ab/nsp2596A596DgCtgAt941941All0.00018
ORF1ab/nsp2596A596AgcTgcC645902All0.000123
ORF1ab/nsp2596A596AgcTgcA184902All0.000035
ORF1ab/nsp2596A596AgcTgcG73902All0.000014
ORF1ab/nsp2596A596VgCtgTt781781AU.10.988608
ORF1ab/nsp2596A596TGctAct647648All0.000124
ORF1ab/nsp2596A596TGcTAcA1648All0
ORF1ab/nsp2596A596AgcTgcA130219B.1.1.70.000116
ORF1ab/nsp2596A596AgcTgcC82219B.1.1.70.000073
ORF1ab/nsp2596A596AgcTgcG7219B.1.1.70.000006
ORF1ab/nsp2596A596DgCtgAt213213B.1.20.001876
ORF1ab/nsp2596A596SGctTct201201All0.000038
ORF1ab/nsp2596A596DgCtgAt188188B.1.4290.004423
ORF1ab/nsp2596A596TGctAct153153B.1.1.70.000137
ORF1ab/nsp2596A596delGCT---124124All0.000024
ORF1ab/nsp2596A596DgCtgAt121121B.1.1.70.000108
ORF1ab/nsp2596A596AgcTgcC101109B.1.3510.003002
ORF1ab/nsp2596A596AgcTgcA6109B.1.3510.000178
ORF1ab/nsp2596A596AgcTgcG2109B.1.3510.000059
ORF1ab/nsp2596A596TGctAct104104B.1.617.20.000392
ORF1ab/nsp2596A596TGctAct8181AY.440.000493
ORF1ab/nsp2596A596DgCtgAt8080B.1.4270.00404
ORF1ab/nsp2596A596VgCtgTt7878B.1.1.70.00007
ORF1ab/nsp2596A596VgCtgTt7373AY.40.000114
ORF1ab/nsp2596A596AgcTgcC3650B.1.20.000317
ORF1ab/nsp2596A596AgcTgcG1450B.1.20.000123
ORF1ab/nsp2596A596TGctAct4949AY.430.000217
ORF1ab/nsp2596A596AgcTgcC4349B.10.000394
ORF1ab/nsp2596A596AgcTgcA549B.10.000046
ORF1ab/nsp2596A596AgcTgcG149B.10.000009
ORF1ab/nsp2596A596DgCtgAt4444B.10.000403
ORF1ab/nsp2596A596SGctTct4343AY.440.000262
ORF1ab/nsp2596A596SGctTct4040B.1.1770.000527
ORF1ab/nsp2596A596AgcTgcC3838AY.1140.008782
ORF1ab/nsp2596A596TGctAct3636AY.5.30.012146
ORF1ab/nsp2596A596AgcTgcC3034AY.40.000047
ORF1ab/nsp2596A596AgcTgcG334AY.40.000005
ORF1ab/nsp2596A596AgcTgcA134AY.40.000002
ORF1ab/nsp2596A596DgCtgAt3333AY.40.000051
ORF1ab/nsp2596A596DgCtgAt3232B.1.2430.002227
ORF1ab/nsp2596A596DgCtgAt3232B.1.5960.002788
ORF1ab/nsp2596A596AgcTgcC2131B.1.1600.000655
ORF1ab/nsp2596A596AgcTgcG531B.1.1600.000156
ORF1ab/nsp2596A596AgcTgcA531B.1.1600.000156
ORF1ab/nsp2596A596TGctAct3030AY.40.000047
ORF1ab/nsp2596A596AgcTgcC3030AY.99.20.002765
ORF1ab/nsp2596A596TGctAct2828AY.1000.001288
ORF1ab/nsp2596A596delGCT---2828B.1.1.70.000025
ORF1ab/nsp2596A596SGctTct2828B.1.1.70.000025
ORF1ab/nsp2596A596AgcTgcC2027B.1.1770.000263
ORF1ab/nsp2596A596AgcTgcA527B.1.1770.000066
ORF1ab/nsp2596A596AgcTgcG227B.1.1770.000026
ORF1ab/nsp2596A596PGctCct2626All0.000005
ORF1ab/nsp2596A596DgCtgAt2626B.1.1.5190.001032
ORF1ab/nsp2596A596TGctAct2424P.10.000378
ORF1ab/nsp2596A596AgcTgcC1120AY.250.000066
ORF1ab/nsp2596A596AgcTgcG820AY.250.000048
ORF1ab/nsp2596A596AgcTgcA120AY.250.000006
ORF1ab/nsp2596A596PGctCct2020B.1.2430.001392
ORF1ab/nsp2596A596VgCtgTt2020B.1.617.20.000075
ORF1ab/nsp2596A596SGctTct1818AY.40.000028
ORF1ab/nsp2596A596SGctTct1717B.1.617.20.000064
ORF1ab/nsp2596A596GgCtgGt1616All0.000003
ORF1ab/nsp2596A596VgCtgTt1616B.10.000147
ORF1ab/nsp2596A596DgCtgAt1616B.1.1.3180.004828
ORF1ab/nsp2596A596DgCtgAt1515AY.1030.000093
ORF1ab/nsp2596A596AgcTgcC1215AY.4.20.00026
ORF1ab/nsp2596A596AgcTgcA215AY.4.20.000043
ORF1ab/nsp2596A596AgcTgcG115AY.4.20.000022
ORF1ab/nsp2596A596TGctAct1515B.1.1.2140.000832
ORF1ab/nsp2596A596AgcTgcC1214AY.440.000073
ORF1ab/nsp2596A596AgcTgcG214AY.440.000012
ORF1ab/nsp2596A596AgcTgcC1014B.1.10.000181
ORF1ab/nsp2596A596AgcTgcG214B.1.10.000036
ORF1ab/nsp2596A596AgcTgcA214B.1.10.000036
ORF1ab/nsp2596A596AgcTgcC714B.1.617.20.000026
ORF1ab/nsp2596A596AgcTgcA414B.1.617.20.000015
ORF1ab/nsp2596A596AgcTgcG314B.1.617.20.000011
ORF1ab/nsp2596A596VgCtgTt1212AY.1030.000075
ORF1ab/nsp2596A596delGCT---1212B.10.00011
ORF1ab/nsp2596A596VgCtgTt1212B.1.1.700.004093
ORF1ab/nsp2596A596VgCtgTt1212B.1.1770.000158
ORF1ab/nsp2596A596YGCtTAt1111All0.000002
ORF1ab/nsp2596A596NGCtAAt1111All0.000002
ORF1ab/nsp2596A596AgcTgcC811AY.30.00008
ORF1ab/nsp2596A596AgcTgcG311AY.30.00003
ORF1ab/nsp2596A596TGctAct1111AY.330.000735
ORF1ab/nsp2596A596YGCtTAt1111B.1.1.70.00001
ORF1ab/nsp2596A596AgcTgcC1111B.1.160.260.026634
ORF1ab/nsp2596A596VgCtgTt1111B.1.4290.000259
ORF1ab/nsp2596A596CGCtTGt1010All0.000002
ORF1ab/nsp2596A596AgcTgcC1010AY.1030.000062
ORF1ab/nsp2596A596TGctAct1010AY.250.00006
ORF1ab/nsp2596A596AgcTgcC910B.1.1.390.004587
ORF1ab/nsp2596A596AgcTgcA110B.1.1.390.00051
ORF1ab/nsp2596A596NGCtAAt1010B.1.1.70.000009
ORF1ab/nsp2596A596DgCtgAt1010B.1.5510.012903
ORF1ab/nsp2596A596DgCtgAt1010B.1.5610.00397
ORF1ab/nsp2596A596TGctAct99AY.890.044118
ORF1ab/nsp2596A596VgCtgTt99B.1.1.3740.021378
ORF1ab/nsp2596A596CGCtTGt99B.1.1.70.000008
ORF1ab/nsp2596A596GgCtgGt99B.1.1.70.000008
ORF1ab/nsp2596A596delGCT---99B.1.1770.000119
ORF1ab/nsp2596A596TGctAct99B.1.20.000079
ORF1ab/nsp2596A596VgCtgTt99P.10.000142
ORF1ab/nsp2596A596del1gcTgc-68All0.000001
ORF1ab/nsp2596A596del1gCtg-t18All0
ORF1ab/nsp2596A596del1Gct-ct18All0
ORF1ab/nsp2596A596VgCtgTt88AY.250.000048
ORF1ab/nsp2596A596AgcTgcA48AY.430.000018
ORF1ab/nsp2596A596AgcTgcG38AY.430.000013
ORF1ab/nsp2596A596AgcTgcC18AY.430.000004
ORF1ab/nsp2596A596DgCtgAt88B.1.4040.010417
ORF1ab/nsp2596A596SGctTct88B.1.4270.000404
ORF1ab/nsp2596A596VgCtgTt88B.1.466.20.00313
ORF1ab/nsp2596A596VgCtgTt88B.1.5960.000697
ORF1ab/nsp2596A596SGctTct77AY.50.000145
ORF1ab/nsp2596A596VgCtgTt77B.1.20.000062
ORF1ab/nsp2596A596DgCtgAt77B.1.2340.000924
ORF1ab/nsp2596A596DgCtgAt77B.1.243.10.155556
ORF1ab/nsp2596A596AgcTgcC77B.1.564.10.011041
ORF1ab/nsp2596A596AgcTgcC67B.1.6280.002114
ORF1ab/nsp2596A596AgcTgcG17B.1.6280.000352
ORF1ab/nsp2596A596DgCtgAt77P.20.001306
ORF1ab/nsp2596A596TGctAct66AY.1030.000037
ORF1ab/nsp2596A596AgcTgcC66AY.1210.000812
ORF1ab/nsp2596A596VgCtgTt66AY.260.00017
ORF1ab/nsp2596A596VgCtgTt66AY.430.000027
ORF1ab/nsp2596A596AgcTgcC66AY.610.000629
ORF1ab/nsp2596A596AgcTgcC56AY.98.10.000242
ORF1ab/nsp2596A596AgcTgcG16AY.98.10.000048
ORF1ab/nsp2596A596DgCtgAt66B.1.1.2220.001224
ORF1ab/nsp2596A596VgCtgTt66B.1.1.5190.000238
ORF1ab/nsp2596A596DgCtgAt66B.1.3110.001647
ORF1ab/nsp2596A596VgCtgTt66B.1.351.30.005259
ORF1ab/nsp2596A596VgCtgTt66P.1.140.000287
ORF1ab/nsp2596A596DgCtgAt66R.10.00054
ORF1ab/nsp2596A596AgcTgcC45AY.200.000155
ORF1ab/nsp2596A596AgcTgcG15AY.200.000039
ORF1ab/nsp2596A596TGctAct55AY.450.000608
ORF1ab/nsp2596A596AgcTgcC45AY.460.000416
ORF1ab/nsp2596A596AgcTgcA15AY.460.000104
ORF1ab/nsp2596A596AgcTgcG45AY.50.000083
ORF1ab/nsp2596A596AgcTgcC15AY.50.000021
ORF1ab/nsp2596A596VgCtgTt55AY.920.001436
ORF1ab/nsp2596A596delGCT---55B.1.10.000091
ORF1ab/nsp2596A596AgcTgcC55B.1.177.440.002595
ORF1ab/nsp2596A596AgcTgcC45B.1.177.810.000757
ORF1ab/nsp2596A596AgcTgcA15B.1.177.810.000189
ORF1ab/nsp2596A596delGCT---55B.1.20.000044
ORF1ab/nsp2596A596TGctAct55B.1.466.20.001956
ORF1ab/nsp2596A596DgCtgAt55B.1.6090.002397
ORF1ab/nsp2596A596delGCT---55P.10.000079
ORF1ab/nsp2596A596delGCT---440.222222
ORF1ab/nsp2596A596VgCtgTt240.111111
ORF1ab/nsp2596A596VgCTgTC240.111111
ORF1ab/nsp2596A596AgcTgcC44AY.10.001583
ORF1ab/nsp2596A596VgCtgTt44AY.1000.000184
ORF1ab/nsp2596A596SGctTct44AY.200.000155
ORF1ab/nsp2596A596VgCtgTt44AY.5.10.015038
ORF1ab/nsp2596A596VgCtgTt44AY.590.002119
ORF1ab/nsp2596A596TGctAct44AY.670.001857
ORF1ab/nsp2596A596AgcTgcG44AY.700.000834
ORF1ab/nsp2596A596VgCtgTt44B.1.10.000073
ORF1ab/nsp2596A596AgcTgcC44B.1.1.2070.004728
ORF1ab/nsp2596A596AgcTgcC44B.1.1.2650.012618
ORF1ab/nsp2596A596DgCtgAt44B.1.1.3160.0037
ORF1ab/nsp2596A596TGctAct44B.1.1600.000125
ORF1ab/nsp2596A596AgcTgcC34B.1.177.310.034483
ORF1ab/nsp2596A596AgcTgcA14B.1.177.310.011494
ORF1ab/nsp2596A596DgCtgAt44B.1.2390.004884
ORF1ab/nsp2596A596VgCtgTt44B.1.258.170.000416
ORF1ab/nsp2596A596DgCtgAt44B.1.4000.001716
ORF1ab/nsp2596A596DgCtgAt44B.1.5950.001044
ORF1ab/nsp2596A596FGCtTTt33All0.000001
ORF1ab/nsp2596A596SGctTct33AY.1020.00008
ORF1ab/nsp2596A596SGctTct33AY.250.000018
ORF1ab/nsp2596A596AgcTgcC23AY.290.000032
ORF1ab/nsp2596A596AgcTgcG13AY.290.000016
ORF1ab/nsp2596A596TGctAct33AY.30.00003
ORF1ab/nsp2596A596VgCtgTt33AY.440.000018
ORF1ab/nsp2596A596VgCtgTt33AY.46.60.000217
ORF1ab/nsp2596A596VgCtgTt33AY.750.000168
ORF1ab/nsp2596A596VgCtgTt33AY.910.002191
ORF1ab/nsp2596A596TGctAct33B.1.1.2970.006711
ORF1ab/nsp2596A596delGCT---33B.1.1.330.001263
ORF1ab/nsp2596A596DgCtgAt33B.1.1.3480.002389
ORF1ab/nsp2596A596delGCT---33B.1.1.3480.002389
ORF1ab/nsp2596A596AgcTgcA33B.1.1.4340.001046
ORF1ab/nsp2596A596FGCtTTt33B.1.1.70.000003
ORF1ab/nsp2596A596VgCtgTt33B.1.1260.003827
ORF1ab/nsp2596A596AgcTgcC23B.1.160.290.008439
ORF1ab/nsp2596A596AgcTgcA13B.1.160.290.004219
ORF1ab/nsp2596A596AgcTgcC33B.1.177.120.000455
ORF1ab/nsp2596A596AgcTgcC23B.1.2210.000142
ORF1ab/nsp2596A596AgcTgcA13B.1.2210.000071
ORF1ab/nsp2596A596VgCtgTt33B.1.2600.010033
ORF1ab/nsp2596A596AgcTgcC33B.1.2600.010033
ORF1ab/nsp2596A596delGCT---33B.1.4290.000071
ORF1ab/nsp2596A596DgCtgAt33B.1.5260.000071
ORF1ab/nsp2596A596DgCtgAt33B.1.617.20.000011
ORF1ab/nsp2596A596delGCT---33B.1.6210.000266
ORF1ab/nsp2596A596TGctAct33B.1.621.10.001517
ORF1ab/nsp2596A596AgcTgcA33Q.80.000495
ORF1ab/nsp2596A596VgCtgTt33Q.80.000495
ORF1ab/nsp2596A596AgcTgcC220.111111
ORF1ab/nsp2596A596GgCtgGt220.111111
ORF1ab/nsp2596A596VgCtgTt22A.2.50.000998
ORF1ab/nsp2596A596IGCtATt22All0
ORF1ab/nsp2596A596AgcTgcC22AY.1020.000053
ORF1ab/nsp2596A596VgCtgTt22AY.1020.000053
ORF1ab/nsp2596A596SGctTct22AY.1030.000012
ORF1ab/nsp2596A596AgcTgcC22AY.1060.00067
ORF1ab/nsp2596A596TGctAct22AY.1130.000285
ORF1ab/nsp2596A596SGctTct22AY.1200.000074
ORF1ab/nsp2596A596AgcTgcC22AY.140.000176
ORF1ab/nsp2596A596AgcTgcC12AY.160.00038
ORF1ab/nsp2596A596AgcTgcA12AY.160.00038
ORF1ab/nsp2596A596TGctAct22AY.3.10.000171
ORF1ab/nsp2596A596TGctAct22AY.320.001065
ORF1ab/nsp2596A596AgcTgcC22AY.330.000134
ORF1ab/nsp2596A596AgcTgcC12AY.390.000025
ORF1ab/nsp2596A596AgcTgcG12AY.390.000025
ORF1ab/nsp2596A596AgcTgcA22AY.4.2.10.000298
ORF1ab/nsp2596A596SGctTct22AY.430.000009
ORF1ab/nsp2596A596VgCtgTt22AY.450.000243
ORF1ab/nsp2596A596DgCtgAt22AY.470.000062
ORF1ab/nsp2596A596TGctAct22AY.540.000191
ORF1ab/nsp2596A596VgCtgTt22AY.540.000191
ORF1ab/nsp2596A596TGctAct22AY.610.00021
ORF1ab/nsp2596A596DgCtgAt22AY.680.000547
ORF1ab/nsp2596A596AgcTgcC22AY.9.20.000073
ORF1ab/nsp2596A596TGctAct22AY.980.000158
ORF1ab/nsp2596A596VgCtgTt22AY.99.20.000184
ORF1ab/nsp2596A596SGctTct22B.10.000018
ORF1ab/nsp2596A596TGcTAcA12B.10.000009
ORF1ab/nsp2596A596TGctAct12B.10.000009
ORF1ab/nsp2596A596TGctAct22B.1.10.000036
ORF1ab/nsp2596A596AgcTgcC22B.1.1.250.001137
ORF1ab/nsp2596A596delGCT---22B.1.1.3150.016949
ORF1ab/nsp2596A596AgcTgcC22B.1.1.3260.003521
ORF1ab/nsp2596A596VgCtgTt22B.1.1.3850.008929
ORF1ab/nsp2596A596DgCtgAt22B.1.1.4320.002532
ORF1ab/nsp2596A596delGCT---22B.1.1.460.008734
ORF1ab/nsp2596A596delGCT---22B.1.1.5170.013605
ORF1ab/nsp2596A596AgcTgcC22B.1.1.5190.000079
ORF1ab/nsp2596A596IGCtATt22B.1.1.70.000002
ORF1ab/nsp2596A596AgcTgcC22B.1.1.700.000682
ORF1ab/nsp2596A596AgcTgcC22B.1.160.140.004237
ORF1ab/nsp2596A596del1gCtg-t12B.1.20.000009
ORF1ab/nsp2596A596del1gcTgc-12B.1.20.000009
ORF1ab/nsp2596A596DgCtgAt22B.1.2320.001075
ORF1ab/nsp2596A596DgCtgAt22B.1.2400.000431
ORF1ab/nsp2596A596AgcTgcC22B.1.2580.000133
ORF1ab/nsp2596A596TGctAct22B.1.258.170.000208
ORF1ab/nsp2596A596AgcTgcC22B.1.258.170.000208
ORF1ab/nsp2596A596TGctAct22B.1.351.30.001753
ORF1ab/nsp2596A596AgcTgcC22B.1.36.10.002281
ORF1ab/nsp2596A596DgCtgAt22B.1.3960.001411
ORF1ab/nsp2596A596delGCT---22B.1.4240.016129
ORF1ab/nsp2596A596VgCtgTt22B.1.4590.008163
ORF1ab/nsp2596A596delGCT---22B.1.5260.000047
ORF1ab/nsp2596A596DgCtgAt22B.1.5680.002222
ORF1ab/nsp2596A596VgCtgTt22B.1.5950.000522
ORF1ab/nsp2596A596SGctTct22B.1.617.10.000258
ORF1ab/nsp2596A596delGCT---22C.370.000232
ORF1ab/nsp2596A596delGCT---22N.60.014184
ORF1ab/nsp2596A596delGCT---22P.1.150.000465
ORF1ab/nsp2596A596VgCtgTt22P.1.20.002312
ORF1ab/nsp2596A596AgcTgcC22W.40.002703
ORF1ab/nsp2596A596VgCtgTt11A0.000387
ORF1ab/nsp2596A596AgcTgcC11A.10.000282
ORF1ab/nsp2596A596VgCtgTt11A.10.000282
ORF1ab/nsp2596A596delGCT---11A.2.40.003367
ORF1ab/nsp2596A596DgCtgAt11A.2.50.000499
ORF1ab/nsp2596A596VgCtgTt11A.270.001656
ORF1ab/nsp2596A596EgCTgAG11All0
ORF1ab/nsp2596A596LGCTCTC11All0
ORF1ab/nsp2596A596AgcTgcC11AY.1000.000046
ORF1ab/nsp2596A596TGctAct11AY.1020.000027
ORF1ab/nsp2596A596TGctAct11AY.1060.000335
ORF1ab/nsp2596A596delGCT---11AY.1080.001103
ORF1ab/nsp2596A596AgcTgcC11AY.1130.000142
ORF1ab/nsp2596A596TGctAct11AY.1160.000287
ORF1ab/nsp2596A596DgCtgAt11AY.116.10.000311
ORF1ab/nsp2596A596SGctTct11AY.116.10.000311
ORF1ab/nsp2596A596delGCT---11AY.1180.000063
ORF1ab/nsp2596A596DgCtgAt11AY.1190.000035
ORF1ab/nsp2596A596AgcTgcC11AY.1200.000037
ORF1ab/nsp2596A596TGctAct11AY.120.10.000321
ORF1ab/nsp2596A596TGctAct11AY.1210.000135
ORF1ab/nsp2596A596AgcTgcC11AY.130.000161
ORF1ab/nsp2596A596VgCtgTt11AY.140.000088
ORF1ab/nsp2596A596AgcTgcC11AY.16.10.00047
ORF1ab/nsp2596A596VgCtgTt11AY.200.000039
ORF1ab/nsp2596A596TGctAct11AY.200.000039
ORF1ab/nsp2596A596AgcTgcC11AY.230.00007
ORF1ab/nsp2596A596AgcTgcC11AY.260.000028
ORF1ab/nsp2596A596DgCtgAt11AY.260.000028
ORF1ab/nsp2596A596TGctAct11AY.290.000016
ORF1ab/nsp2596A596VgCtgTt11AY.290.000016
ORF1ab/nsp2596A596VgCtgTt11AY.29.10.000221
ORF1ab/nsp2596A596VgCtgTt11AY.30.00001
ORF1ab/nsp2596A596AgcTgcG11AY.3.10.000085
ORF1ab/nsp2596A596SGctTct11AY.3.10.000085
ORF1ab/nsp2596A596TGctAct11AY.300.000396
ORF1ab/nsp2596A596VgCtgTt11AY.300.000396
ORF1ab/nsp2596A596AgcTgcC11AY.300.000396
ORF1ab/nsp2596A596AgcTgcC11AY.340.000097
ORF1ab/nsp2596A596TGctAct11AY.360.000148
ORF1ab/nsp2596A596AgcTgcC11AY.360.000148
ORF1ab/nsp2596A596TGctAct11AY.370.000316
ORF1ab/nsp2596A596TGctAct11AY.390.000025
ORF1ab/nsp2596A596delGCT---11AY.40.000002
ORF1ab/nsp2596A596SGctTct11AY.4.20.000022
ORF1ab/nsp2596A596SGctTct11AY.4.50.000107
ORF1ab/nsp2596A596delGCT---11AY.4.50.000107
ORF1ab/nsp2596A596delGCT---11AY.420.00004
ORF1ab/nsp2596A596SGctTct11AY.420.00004
ORF1ab/nsp2596A596GgCtgGt11AY.430.000004
ORF1ab/nsp2596A596DgCtgAt11AY.430.000004
ORF1ab/nsp2596A596PGctCct11AY.440.000006
ORF1ab/nsp2596A596del1gcTgc-11AY.440.000006
ORF1ab/nsp2596A596LGCTCTC11AY.440.000006
ORF1ab/nsp2596A596DgCtgAt11AY.440.000006
ORF1ab/nsp2596A596VgCtgTt11AY.460.000104
ORF1ab/nsp2596A596DgCtgAt11AY.460.000104
ORF1ab/nsp2596A596SGctTct11AY.46.10.001027
ORF1ab/nsp2596A596SGctTct11AY.46.40.000165
ORF1ab/nsp2596A596VgCtgTt11AY.46.50.000198
ORF1ab/nsp2596A596AgcTgcC11AY.470.000031
ORF1ab/nsp2596A596del1gcTgc-11AY.480.000465
ORF1ab/nsp2596A596DgCtgAt11AY.50.000021
ORF1ab/nsp2596A596SGctTct11AY.5.30.000337
ORF1ab/nsp2596A596DgCtgAt11AY.540.000095
ORF1ab/nsp2596A596TGctAct11AY.550.000917
ORF1ab/nsp2596A596delGCT---11AY.60.000041
ORF1ab/nsp2596A596TGctAct11AY.60.000041
ORF1ab/nsp2596A596SGctTct11AY.610.000105
ORF1ab/nsp2596A596SGctTct11AY.620.000436
ORF1ab/nsp2596A596SGctTct11AY.670.000464
ORF1ab/nsp2596A596delGCT---11AY.680.000274
ORF1ab/nsp2596A596SGctTct11AY.690.000187
ORF1ab/nsp2596A596PGctCct11AY.70.000196
ORF1ab/nsp2596A596delGCT---11AY.7.20.000559
ORF1ab/nsp2596A596DgCtgAt11AY.710.000475
ORF1ab/nsp2596A596delGCT---11AY.730.000665
ORF1ab/nsp2596A596TGctAct11AY.750.000056
ORF1ab/nsp2596A596AgcTgcC11AY.750.000056
ORF1ab/nsp2596A596delGCT---11AY.75.10.00018
ORF1ab/nsp2596A596VgCtgTt11AY.75.10.00018
ORF1ab/nsp2596A596DgCtgAt11AY.75.10.00018
ORF1ab/nsp2596A596del1gcTgc-11AY.790.001211
ORF1ab/nsp2596A596AgcTgcC11AY.90.000068
ORF1ab/nsp2596A596AgcTgcC11AY.9.10.000084
ORF1ab/nsp2596A596VgCtgTt11AY.9.20.000037
ORF1ab/nsp2596A596VgCtgTt11AY.9.2.10.001976
ORF1ab/nsp2596A596SGctTct11AY.920.000287
ORF1ab/nsp2596A596VgCtgTt11AY.980.000079
ORF1ab/nsp2596A596VgCtgTt11AY.98.10.000048
ORF1ab/nsp2596A596DgCtgAt11AZ.30.00152
ORF1ab/nsp2596A596VgCtgTt11B0.000128
ORF1ab/nsp2596A596GgCtgGt11B.10.000009
ORF1ab/nsp2596A596GgCtgGt11B.1.10.000018
ORF1ab/nsp2596A596SGctTct11B.1.10.000018
ORF1ab/nsp2596A596EgCTgAG11B.1.10.000018
ORF1ab/nsp2596A596VgCtgTt11B.1.1.10.000327
ORF1ab/nsp2596A596VgCtgTt11B.1.1.1290.009174
ORF1ab/nsp2596A596delGCT---11B.1.1.1390.022727
ORF1ab/nsp2596A596AgcTgcC11B.1.1.1610.003534
ORF1ab/nsp2596A596VgCtgTt11B.1.1.1860.003436
ORF1ab/nsp2596A596delGCT---11B.1.1.1970.037037
ORF1ab/nsp2596A596DgCtgAt11B.1.1.2070.001182
ORF1ab/nsp2596A596AgcTgcC11B.1.1.2160.00089
ORF1ab/nsp2596A596VgCtgTt11B.1.1.2220.000204
ORF1ab/nsp2596A596DgCtgAt11B.1.1.2310.003096
ORF1ab/nsp2596A596AgcTgcC11B.1.1.2410.00207
ORF1ab/nsp2596A596TGctAct11B.1.1.250.000569
ORF1ab/nsp2596A596VgCtgTt11B.1.1.2690.001353
ORF1ab/nsp2596A596TGctAct11B.1.1.3020.002075
ORF1ab/nsp2596A596AgcTgcA11B.1.1.3120.001912
ORF1ab/nsp2596A596TGctAct11B.1.1.3150.008475
ORF1ab/nsp2596A596VgCtgTt11B.1.1.3170.000412
ORF1ab/nsp2596A596TGctAct11B.1.1.3180.000302
ORF1ab/nsp2596A596VgCtgTt11B.1.1.3260.001761
ORF1ab/nsp2596A596AgcTgcC11B.1.1.370.000193
ORF1ab/nsp2596A596TGctAct11B.1.1.3770.001381
ORF1ab/nsp2596A596AgcTgcC11B.1.1.3890.006061
ORF1ab/nsp2596A596TGctAct11B.1.1.3890.006061
ORF1ab/nsp2596A596delGCT---11B.1.1.4160.000905
ORF1ab/nsp2596A596AgcTgcC11B.1.1.4450.037037
ORF1ab/nsp2596A596delGCT---11B.1.1.4480.002033
ORF1ab/nsp2596A596DgCtgAt11B.1.1.4560.055556
ORF1ab/nsp2596A596AgcTgcA11B.1.1.470.005348
ORF1ab/nsp2596A596VgCtgTt11B.1.1.4860.001577
ORF1ab/nsp2596A596TGctAct11B.1.1.5190.00004
ORF1ab/nsp2596A596PGctCct11B.1.1.70.000001
ORF1ab/nsp2596A596delGCT---11B.1.1.700.000341
ORF1ab/nsp2596A596TGctAct11B.1.130.002375
ORF1ab/nsp2596A596delGCT---11B.1.1400.018868
ORF1ab/nsp2596A596delGCT---11B.1.1600.000031
ORF1ab/nsp2596A596VgCtgTt11B.1.1600.000031
ORF1ab/nsp2596A596AgcTgcC11B.1.160.100.008065
ORF1ab/nsp2596A596AgcTgcC11B.1.160.160.000929
ORF1ab/nsp2596A596AgcTgcC11B.1.160.220.006757
ORF1ab/nsp2596A596AgcTgcC11B.1.160.320.004292
ORF1ab/nsp2596A596TGctAct11B.1.1770.000013
ORF1ab/nsp2596A596AgcTgcC11B.1.177.210.000076
ORF1ab/nsp2596A596AgcTgcC11B.1.177.230.003236
ORF1ab/nsp2596A596TGctAct11B.1.177.330.001645
ORF1ab/nsp2596A596VgCtgTt11B.1.177.40.000211
ORF1ab/nsp2596A596TGctAct11B.1.177.450.000381
ORF1ab/nsp2596A596AgcTgcC11B.1.177.500.004695
ORF1ab/nsp2596A596VgCtgTt11B.1.177.560.000668
ORF1ab/nsp2596A596VgCtgTt11B.1.177.570.000281
ORF1ab/nsp2596A596delGCT---11B.1.177.620.001192
ORF1ab/nsp2596A596AgcTgcC11B.1.177.730.000566
ORF1ab/nsp2596A596delGCT---11B.1.177.830.001481
ORF1ab/nsp2596A596SGctTct11B.1.177.860.000183
ORF1ab/nsp2596A596AgcTgcC11B.1.177.870.000728
ORF1ab/nsp2596A596AgcTgcC11B.1.2060.000816
ORF1ab/nsp2596A596AgcTgcA11B.1.2140.003663
ORF1ab/nsp2596A596AgcTgcC11B.1.2220.001692
ORF1ab/nsp2596A596VgCtgTt11B.1.2220.001692
ORF1ab/nsp2596A596TGctAct11B.1.2320.000537
ORF1ab/nsp2596A596TGctAct11B.1.2340.000132
ORF1ab/nsp2596A596SGctTct11B.1.2340.000132
ORF1ab/nsp2596A596VgCtgTt11B.1.2400.000216
ORF1ab/nsp2596A596SGctTct11B.1.2430.00007
ORF1ab/nsp2596A596AgcTgcC11B.1.2430.00007
ORF1ab/nsp2596A596TGctAct11B.1.2580.000067
ORF1ab/nsp2596A596DgCtgAt11B.1.2650.001271
ORF1ab/nsp2596A596AgcTgcA11B.1.3320.003497
ORF1ab/nsp2596A596AgcTgcC11B.1.3460.001311
ORF1ab/nsp2596A596DgCtgAt11B.1.3490.000715
ORF1ab/nsp2596A596VgCtgTt11B.1.3510.00003
ORF1ab/nsp2596A596del1Gct-ct11B.1.3510.00003
ORF1ab/nsp2596A596DgCtgAt11B.1.3510.00003
ORF1ab/nsp2596A596delGCT---11B.1.360.000146
ORF1ab/nsp2596A596VgCtgTt11B.1.360.000146
ORF1ab/nsp2596A596VgCtgTt11B.1.36.310.001751
ORF1ab/nsp2596A596VgCtgTt11B.1.36.70.004
ORF1ab/nsp2596A596AgcTgcC11B.1.36.80.001
ORF1ab/nsp2596A596VgCtgTt11B.1.36.80.001
ORF1ab/nsp2596A596TGctAct11B.1.3610.001289
ORF1ab/nsp2596A596SGctTct11B.1.3620.001541
ORF1ab/nsp2596A596DgCtgAt11B.1.3690.000285
ORF1ab/nsp2596A596TGctAct11B.1.3750.00082
ORF1ab/nsp2596A596DgCtgAt11B.1.3750.00082
ORF1ab/nsp2596A596SGctTct11B.1.4160.001269
ORF1ab/nsp2596A596DgCtgAt11B.1.4230.010204
ORF1ab/nsp2596A596VgCtgTt11B.1.4620.007246
ORF1ab/nsp2596A596AgcTgcG11B.1.4970.000315
ORF1ab/nsp2596A596TGctAct11B.1.4990.00105
ORF1ab/nsp2596A596PGctCct11B.1.5170.000427
ORF1ab/nsp2596A596AgcTgcC11B.1.5230.002451
ORF1ab/nsp2596A596AgcTgcC11B.1.5250.000113
ORF1ab/nsp2596A596del1gcTgc-11B.1.5250.000113
ORF1ab/nsp2596A596TGctAct11B.1.5250.000113
ORF1ab/nsp2596A596VgCtgTt11B.1.5260.000024
ORF1ab/nsp2596A596AgcTgcC11B.1.5400.009709
ORF1ab/nsp2596A596delGCT---11B.1.5510.00129
ORF1ab/nsp2596A596delGCT---11B.1.5610.000397
ORF1ab/nsp2596A596AgcTgcC11B.1.5640.000426
ORF1ab/nsp2596A596DgCtgAt11B.1.5640.000426
ORF1ab/nsp2596A596DgCtgAt11B.1.5670.003333
ORF1ab/nsp2596A596VgCtgTt11B.1.5740.002151
ORF1ab/nsp2596A596DgCtgAt11B.1.5750.000303
ORF1ab/nsp2596A596VgCtgTt11B.1.575.10.002439
ORF1ab/nsp2596A596DgCtgAt11B.1.5770.000687
ORF1ab/nsp2596A596DgCtgAt11B.1.5820.000491
ORF1ab/nsp2596A596GgCtgGt11B.1.5880.00091
ORF1ab/nsp2596A596AgcTgcC11B.1.5900.004545
ORF1ab/nsp2596A596AgcTgcC11B.1.6020.006536
ORF1ab/nsp2596A596PGctCct11B.1.617.10.000129
ORF1ab/nsp2596A596del1gcTgc-11B.1.617.20.000004
ORF1ab/nsp2596A596delGCT---11B.1.617.20.000004
ORF1ab/nsp2596A596CGCtTGt11B.1.617.20.000004
ORF1ab/nsp2596A596PGctCct11B.1.617.20.000004
ORF1ab/nsp2596A596GgCtgGt11B.1.617.20.000004
ORF1ab/nsp2596A596delGCT---11B.1.617.30.002985
ORF1ab/nsp2596A596AgcTgcG11B.1.6210.000089
ORF1ab/nsp2596A596delGCT---11B.1.621.10.000506
ORF1ab/nsp2596A596AgcTgcC11B.1.6370.000073
ORF1ab/nsp2596A596TGctAct11B.1.6370.000073
ORF1ab/nsp2596A596DgCtgAt11B.1.810.021277
ORF1ab/nsp2596A596TGctAct11B.1.9.40.006135
ORF1ab/nsp2596A596TGctAct11B.40.002208
ORF1ab/nsp2596A596VgCtgTt11B.400.000364
ORF1ab/nsp2596A596delGCT---11B.570.015152
ORF1ab/nsp2596A596DgCtgAt11C.130.025641
ORF1ab/nsp2596A596VgCtgTt11C.160.00106
ORF1ab/nsp2596A596SGctTct11D.20.000075
ORF1ab/nsp2596A596VgCtgTt11D.20.000075
ORF1ab/nsp2596A596DgCtgAt11P.10.000016
ORF1ab/nsp2596A596NGCtAAt11P.10.000016
ORF1ab/nsp2596A596AgcTgcG11P.10.000016
ORF1ab/nsp2596A596DgCtgAt11P.1.10.000318
ORF1ab/nsp2596A596AgcTgcC11P.1.120.000484
ORF1ab/nsp2596A596AgcTgcC11P.1.140.000048
ORF1ab/nsp2596A596VgCtgTt11P.1.150.000232
ORF1ab/nsp2596A596TGctAct11P.1.150.000232
ORF1ab/nsp2596A596AgcTgcC11P.20.000187
ORF1ab/nsp2596A596delGCT---11Q.10.000126
ORF1ab/nsp2596A596AgcTgcC11Q.30.000145
ORF1ab/nsp2596A596VgCtgTt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.