CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 582 | D582G | D762G | nonsyn | gAt | gGt | 1463 | 1462 | 0.999316 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582G | D762G | nonsyn | gAT | gGG | 1463 | 1 | 0.000683527 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582D | D762D | syn | gaT | gaC | 469 | 469 | 1 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582N | D762N | nonsyn | Gat | Aat | 163 | 163 | 1 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582V | D762V | nonsyn | gAt | gTt | 83 | 83 | 1 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582Y | D762Y | nonsyn | Gat | Tat | 72 | 72 | 1 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582del | D762del | del | GAT | --- | 55 | 55 | 1 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582A | D762A | nonsyn | gAt | gCt | 49 | 49 | 1 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582E | D762E | nonsyn | gaT | gaG | 33 | 25 | 0.757576 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582E | D762E | nonsyn | gaT | gaA | 33 | 8 | 0.242424 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582H | D762H | nonsyn | Gat | Cat | 9 | 9 | 1 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582del1 | D762del1 | del | gaT | ga- | 9 | 7 | 0.777778 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582del1 | D762del1 | del | GAt | -Tt | 9 | 1 | 0.111111 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582del1 | D762del1 | del | Gat | -at | 9 | 1 | 0.111111 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582Q | D762Q | nonsyn | GaT | CaG | 3 | 2 | 0.666667 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582Q | D762Q | nonsyn | GaT | CaA | 3 | 1 | 0.333333 | 2549-2551 |
ORF1ab/nsp2 | 582 | D582X | D762X | nonsyn | GAT | TGA | 2 | 2 | 1 | 2549-2551 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1462 | 1463 | All | 0.00028 |
ORF1ab/nsp2 | 582 | D582G | gAT | gGG | 1 | 1463 | All | 0 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 857 | 857 | P.1.2 | 0.990751 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 469 | 469 | All | 0.00009 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 163 | 163 | All | 0.000031 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 146 | 146 | AY.39.1 | 0.005784 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 120 | 120 | AY.5 | 0.002478 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 83 | 83 | All | 0.000016 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 72 | 72 | All | 0.000014 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 68 | 68 | AY.25 | 0.000409 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 68 | 68 | B.1.2 | 0.000599 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 55 | 56 | B.1.1.7 | 0.000049 |
ORF1ab/nsp2 | 582 | D582G | gAT | gGG | 1 | 56 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 55 | 55 | All | 0.000011 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 49 | 49 | All | 0.000009 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 42 | 42 | AY.3.1 | 0.003581 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 39 | 39 | B.1.617.2 | 0.000147 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 25 | 33 | All | 0.000005 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaA | 8 | 33 | All | 0.000002 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 28 | 28 | B.1.234 | 0.003694 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 24 | 24 | AY.4 | 0.000037 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 22 | 22 | AY.50 | 0.017586 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 22 | 22 | B.1.637 | 0.001608 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 19 | 19 | AY.103 | 0.000118 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 19 | 19 | AY.44 | 0.000116 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 19 | 19 | B.1 | 0.000174 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 17 | 17 | AY.59 | 0.009004 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 16 | 16 | AY.6 | 0.000658 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 16 | 16 | B.1.1.517 | 0.108844 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 14 | 14 | B.1.36 | 0.002043 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 12 | 12 | B.1.415 | 0.171429 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 11 | 11 | B.1.1.274 | 0.055556 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 10 | 10 | AY.36 | 0.001482 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 9 | 9 | A | 0.003483 |
ORF1ab/nsp2 | 582 | D582H | Gat | Cat | 9 | 9 | All | 0.000002 |
ORF1ab/nsp2 | 582 | D582del1 | gaT | ga- | 7 | 9 | All | 0.000001 |
ORF1ab/nsp2 | 582 | D582del1 | GAt | -Tt | 1 | 9 | All | 0 |
ORF1ab/nsp2 | 582 | D582del1 | Gat | -at | 1 | 9 | All | 0 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 7 | 7 | B.1.160.17 | 0.011905 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 5 | 5 | B | 0.000639 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 5 | 5 | B.1.177.35 | 0.003455 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 5 | 5 | B.1.213 | 0.074627 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 5 | 5 | B.1.239 | 0.006105 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 4 | 4 | B.1.139 | 0.002933 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp2 | 582 | D582Q | GaT | CaG | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 582 | D582Q | GaT | CaA | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 2 | 3 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaA | 1 | 3 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp2 | 582 | D582del1 | gaT | ga- | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 582 | D582del1 | Gat | -at | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp2 | 582 | D582Q | GaT | CaG | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 2 | 2 | A.5 | 0.003846 |
ORF1ab/nsp2 | 582 | D582X | GAT | TGA | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 582 | D582H | Gat | Cat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 582 | D582del1 | gaT | ga- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 582 | D582H | Gat | Cat | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaA | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 582 | D582Q | GaT | CaA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 582 | D582H | Gat | Cat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 582 | D582H | Gat | Cat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 582 | D582X | GAT | TGA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp2 | 582 | D582H | Gat | Cat | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 582 | D582del1 | gaT | ga- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaA | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | B.1.1.257 | 0.009709 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.1.459 | 0.015385 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaA | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 582 | D582del1 | GAt | -Tt | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.423 | 0.010204 |
ORF1ab/nsp2 | 582 | D582del1 | gaT | ga- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 582 | D582del1 | gaT | ga- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 582 | D582H | Gat | Cat | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp2 | 582 | D582H | Gat | Cat | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 582 | D582X | GAT | TGA | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 582 | D582V | gAt | gTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 582 | D582D | gaT | gaC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 582 | D582E | gaT | gaG | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp2 | 582 | D582Y | Gat | Tat | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 582 | D582del | GAT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp2 | 582 | D582N | Gat | Aat | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 582 | D582A | gAt | gCt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 582 | D582G | gAt | gGt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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