CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 577 | V577V | V757V | syn | gtC | gtT | 8166 | 8026 | 0.982856 | 2534-2536 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 8026 | 8166 | All | 0.001535 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1420 | 1421 | B.1.525 | 0.160688 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1294 | 1313 | B.1.1.7 | 0.001158 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 993 | 999 | AY.4 | 0.001546 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 387 | 390 | B.1.617.2 | 0.001457 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 296 | 297 | B.1.2 | 0.002606 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 230 | 230 | AY.44 | 0.0014 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 207 | 207 | AY.102 | 0.005488 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 168 | 170 | AY.25 | 0.00101 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 155 | 155 | B.1.532 | 0.962733 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 146 | 146 | B.1.221 | 0.010371 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 120 | 128 | B.1 | 0.001099 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 123 | 124 | B.1.177 | 0.00162 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 119 | 119 | AY.4.2 | 0.002581 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 105 | 105 | AY.103 | 0.000652 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 91 | 99 | AY.43 | 0.000403 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 96 | 96 | B.1.628 | 0.033827 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 91 | 91 | B.1.526 | 0.002139 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 76 | 78 | B.1.1.519 | 0.003018 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 76 | 76 | AY.3 | 0.000756 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 72 | 72 | B.1.1 | 0.001306 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 70 | 71 | B.1.160 | 0.002183 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 69 | 69 | B.1.1.153 | 0.075575 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 6 | 68 | B.1.617.1 | 0.000774 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 64 | 64 | AY.47 | 0.001991 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 57 | 57 | B.1.351 | 0.001694 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 56 | 56 | AY.39 | 0.001384 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 49 | 49 | AY.29 | 0.000773 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 49 | 49 | B.1.429 | 0.001153 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 49 | 49 | P.1.15 | 0.011385 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 46 | 46 | B.1.565 | 0.037277 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 38 | 39 | P.1 | 0.000599 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 34 | 35 | AY.75 | 0.001905 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 30 | 30 | AY.94 | 0.01328 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 30 | 30 | B.1.1.28 | 0.009337 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 26 | 26 | AY.54 | 0.002479 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 26 | 26 | B.1.318 | 1 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 25 | 25 | AY.120 | 0.000929 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 24 | 24 | AY.20 | 0.000933 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 23 | 23 | AY.100 | 0.001058 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 23 | 23 | B.1.1.275 | 0.258427 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 22 | 22 | AY.26 | 0.000623 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 21 | 21 | AY.39.1 | 0.000832 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 19 | 19 | AY.119 | 0.000671 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 18 | 18 | AY.13 | 0.002898 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 18 | 18 | AY.5 | 0.000372 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 17 | 17 | AY.14 | 0.001496 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 17 | 17 | AY.23 | 0.001186 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 17 | 17 | B.1.177.81 | 0.003218 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 17 | 17 | C.37 | 0.001973 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 17 | 17 | P.1.7 | 0.005428 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 16 | 16 | AY.4.4 | 0.006547 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 15 | 16 | AY.69 | 0.0028 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 16 | 16 | AY.99.2 | 0.001475 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 15 | 15 | B.1.36 | 0.002189 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 15 | 15 | B.1.561 | 0.005955 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 13 | 14 | AY.6 | 0.000535 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 14 | 14 | AY.9.2 | 0.000514 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 13 | 13 | B.1.147 | 0.009826 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 12 | 12 | AY.42 | 0.000483 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 12 | 12 | AY.46.6 | 0.000866 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 12 | 12 | B.1.1.70 | 0.004093 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 12 | 12 | B.1.177.60 | 0.002621 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 12 | 12 | B.1.361 | 0.015464 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 11 | 11 | B.1.1.277 | 0.008346 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 11 | 11 | B.1.344 | 0.090164 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 11 | 11 | B.1.409 | 0.008594 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 9 | 11 | B.1.596 | 0.000784 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 11 | 11 | P.2 | 0.002053 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 9 | 9 | AY.118 | 0.000564 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 9 | 9 | B.1.258.17 | 0.000936 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 8 | 9 | B.1.637 | 0.000585 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 8 | 8 | B | 0.001022 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 8 | 8 | B.1.1.174 | 0.027027 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 8 | 8 | B.1.1.317 | 0.003294 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 7 | 7 | B.1.1.51 | 0.012027 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 7 | 7 | B.1.241 | 0.005682 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 7 | 7 | B.1.396 | 0.00494 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 7 | 7 | B.1.607 | 0.368421 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 7 | 7 | B.1.620 | 0.006623 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 4 | 6 | AY.46 | 0.000416 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 6 | 6 | B.1.177.33 | 0.009868 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 6 | 6 | Q.3 | 0.00087 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 6 | R.1 | 0.00009 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | AY.106 | 0.001674 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | AY.40 | 0.004822 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | B.1.177.50 | 0.023474 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | B.1.177.75 | 0.005203 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | B.1.213 | 0.074627 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 5 | 5 | S.1 | 0.024752 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 4 | 4 | A.23.1 | 0.002817 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 4 | 4 | B.1.1.372 | 0.002755 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 4 | 4 | B.1.36.38 | 0.006568 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | A.28 | 0.007937 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | AY.78 | 0.004622 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.1.165 | 0.046154 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.1.304 | 0.008427 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 3 | B.1.1.420 | 0.002012 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.1.72 | 0.090909 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.139 | 0.002199 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.265 | 0.003812 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.346 | 0.003932 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.540 | 0.029126 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 3 | B.40 | 0.000729 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 3 | 3 | C.14 | 0.012987 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 2 | A | 0.000387 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 2 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.1.115 | 0.017857 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.160.15 | 0.009901 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.177.26 | 0.013986 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.123 | 0.017857 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.271 | 0.055556 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.320 | 0.018182 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.127 | 0.002198 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.240.2 | 0.030303 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | C.12 | 0.007194 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 577 | V577V | gtC | gtT | 1 | 1 | P.1.8 | 0.004785 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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