CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 575

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2575E575KE755KnonsynGaaAaa2434243412528-2530
ORF1ab/nsp2575E575EE755EsyngaAgaG52452412528-2530
ORF1ab/nsp2575E575DE755DnonsyngaAgaT90480.5333332528-2530
ORF1ab/nsp2575E575DE755DnonsyngaAgaC90420.4666672528-2530
ORF1ab/nsp2575E575delE755deldelGAA---656512528-2530
ORF1ab/nsp2575E575GE755GnonsyngAagGa51490.9607842528-2530
ORF1ab/nsp2575E575GE755GnonsyngAAgGG5120.03921572528-2530
ORF1ab/nsp2575E575VE755VnonsyngAagTa414112528-2530
ORF1ab/nsp2575E575AE755AnonsyngAagCa232312528-2530
ORF1ab/nsp2575E575XE755XnonsynGaaTaa1160.5454552528-2530
ORF1ab/nsp2575E575XE755XnonsynGaATaG1140.3636362528-2530
ORF1ab/nsp2575E575XE755XnonsynGAaTGa1110.09090912528-2530
ORF1ab/nsp2575E575QE755QnonsynGaaCaa6612528-2530
ORF1ab/nsp2575E575del1E755del1delgAag-a1112528-2530
ORF1ab/nsp2575E575RE755RnonsynGAACGT1112528-2530

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2575E575KGaaAaa24342434All0.000466
ORF1ab/nsp2575E575KGaaAaa19341934B.1.2790.993323
ORF1ab/nsp2575E575EgaAgaG524524All0.0001
ORF1ab/nsp2575E575EgaAgaG178178B.1.617.20.00067
ORF1ab/nsp2575E575EgaAgaG175175B.1.1.70.000157
ORF1ab/nsp2575E575DgaAgaT4890All0.000009
ORF1ab/nsp2575E575DgaAgaC4290All0.000008
ORF1ab/nsp2575E575KGaaAaa6868B.60.061874
ORF1ab/nsp2575E575delGAA---6565All0.000012
ORF1ab/nsp2575E575EgaAgaG6161AY.1020.001617
ORF1ab/nsp2575E575KGaaAaa5656B.1.1770.000737
ORF1ab/nsp2575E575GgAagGa4951All0.000009
ORF1ab/nsp2575E575GgAAgGG251All0
ORF1ab/nsp2575E575KGaaAaa5050B.1.1.70.000045
ORF1ab/nsp2575E575KGaaAaa4646AY.250.000277
ORF1ab/nsp2575E575VgAagTa4141All0.000008
ORF1ab/nsp2575E575KGaaAaa4141B.1.617.10.005288
ORF1ab/nsp2575E575KGaaAaa2828AY.40.000044
ORF1ab/nsp2575E575AgAagCa2323All0.000004
ORF1ab/nsp2575E575EgaAgaG2121AY.390.000519
ORF1ab/nsp2575E575VgAagTa1919AY.4.50.002042
ORF1ab/nsp2575E575KGaaAaa1818B.10.000165
ORF1ab/nsp2575E575KGaaAaa1818B.1.1.2260.104651
ORF1ab/nsp2575E575delGAA---1515B.1.1.70.000013
ORF1ab/nsp2575E575AgAagCa1414AY.470.000435
ORF1ab/nsp2575E575KGaaAaa1414B.1.3800.092715
ORF1ab/nsp2575E575DgaAgaT1213B.1.4270.000606
ORF1ab/nsp2575E575DgaAgaC113B.1.4270.00005
ORF1ab/nsp2575E575KGaaAaa1212B0.001534
ORF1ab/nsp2575E575XGaaTaa611All0.000001
ORF1ab/nsp2575E575XGaATaG411All0.000001
ORF1ab/nsp2575E575XGAaTGa111All0
ORF1ab/nsp2575E575DgaAgaT1111B.1.5260.000259
ORF1ab/nsp2575E575KGaaAaa1111P.10.000173
ORF1ab/nsp2575E575EgaAgaG1010AY.430.000044
ORF1ab/nsp2575E575GgAagGa1010B.1.1.70.000009
ORF1ab/nsp2575E575DgaAgaC710B.1.1.70.000006
ORF1ab/nsp2575E575DgaAgaT310B.1.1.70.000003
ORF1ab/nsp2575E575KGaaAaa1010B.1.20.000088
ORF1ab/nsp2575E575KGaaAaa1010B.1.617.20.000038
ORF1ab/nsp2575E575KGaaAaa99A0.003483
ORF1ab/nsp2575E575EgaAgaG99AY.1170.000761
ORF1ab/nsp2575E575DgaAgaT79AY.40.000011
ORF1ab/nsp2575E575DgaAgaC29AY.40.000003
ORF1ab/nsp2575E575VgAagTa99B.1.1.70.000008
ORF1ab/nsp2575E575KGaaAaa99B.1.4290.000212
ORF1ab/nsp2575E575KGaaAaa88B.1.1570.023881
ORF1ab/nsp2575E575DgaAgaC77AY.30.00007
ORF1ab/nsp2575E575GgAagGa77B.1.1.2410.014493
ORF1ab/nsp2575E575KGaaAaa77P.20.001306
ORF1ab/nsp2575E575delGAA---660.333333
ORF1ab/nsp2575E575QGaaCaa66All0.000001
ORF1ab/nsp2575E575EgaAgaG66AY.1160.001721
ORF1ab/nsp2575E575KGaaAaa66AY.440.000037
ORF1ab/nsp2575E575VgAagTa66B.1.1.5190.000238
ORF1ab/nsp2575E575DgaAgaC66B.1.177.120.00091
ORF1ab/nsp2575E575DgaAgaC66B.1.5640.002555
ORF1ab/nsp2575E575KGaaAaa55AY.1030.000031
ORF1ab/nsp2575E575EgaAgaG55AY.250.00003
ORF1ab/nsp2575E575GgAagGa55AY.4.20.000108
ORF1ab/nsp2575E575delGAA---55B.10.000046
ORF1ab/nsp2575E575KGaaAaa55B.1.2400.001078
ORF1ab/nsp2575E575DgaAgaT45B.1.617.20.000015
ORF1ab/nsp2575E575DgaAgaC15B.1.617.20.000004
ORF1ab/nsp2575E575EgaAgaG44AY.1030.000025
ORF1ab/nsp2575E575EgaAgaG44AY.620.001743
ORF1ab/nsp2575E575GgAagGa34B.10.000027
ORF1ab/nsp2575E575GgAAgGG14B.10.000009
ORF1ab/nsp2575E575EgaAgaG44P.1.140.000191
ORF1ab/nsp2575E575KGaaAaa33AY.1000.000138
ORF1ab/nsp2575E575EgaAgaG33AY.1190.000106
ORF1ab/nsp2575E575KGaaAaa33AY.200.000117
ORF1ab/nsp2575E575EgaAgaG33AY.40.000005
ORF1ab/nsp2575E575DgaAgaC23AY.430.000009
ORF1ab/nsp2575E575DgaAgaT13AY.430.000004
ORF1ab/nsp2575E575GgAagGa33AY.440.000018
ORF1ab/nsp2575E575EgaAgaG33AY.440.000018
ORF1ab/nsp2575E575EgaAgaG33AY.450.000365
ORF1ab/nsp2575E575EgaAgaG33B.10.000027
ORF1ab/nsp2575E575delGAA---33B.1.1.330.001263
ORF1ab/nsp2575E575DgaAgaT33B.1.1770.00004
ORF1ab/nsp2575E575KGaaAaa33B.1.2210.000213
ORF1ab/nsp2575E575EgaAgaG33B.1.2210.000213
ORF1ab/nsp2575E575KGaaAaa33B.1.5070.033708
ORF1ab/nsp2575E575GgAagGa33B.1.6210.000266
ORF1ab/nsp2575E575KGaaAaa22AY.230.000139
ORF1ab/nsp2575E575EgaAgaG22AY.30.00002
ORF1ab/nsp2575E575KGaaAaa22AY.39.10.000079
ORF1ab/nsp2575E575AgAagCa22AY.40.000003
ORF1ab/nsp2575E575GgAagGa22AY.40.000003
ORF1ab/nsp2575E575EgaAgaG22AY.46.20.001271
ORF1ab/nsp2575E575DgaAgaC22AY.46.40.000329
ORF1ab/nsp2575E575EgaAgaG22AY.46.40.000329
ORF1ab/nsp2575E575EgaAgaG22AY.770.002255
ORF1ab/nsp2575E575EgaAgaG22B.1.10.000036
ORF1ab/nsp2575E575KGaaAaa22B.1.10.000036
ORF1ab/nsp2575E575delGAA---22B.1.10.000036
ORF1ab/nsp2575E575delGAA---22B.1.1.3480.001592
ORF1ab/nsp2575E575KGaaAaa22B.1.1.5190.000079
ORF1ab/nsp2575E575AgAagCa22B.1.1.70.000002
ORF1ab/nsp2575E575DgaAgaC22B.1.20.000018
ORF1ab/nsp2575E575delGAA---22B.1.20.000018
ORF1ab/nsp2575E575KGaaAaa22B.1.2580.000133
ORF1ab/nsp2575E575delGAA---22B.1.4240.016129
ORF1ab/nsp2575E575delGAA---22B.1.4290.000047
ORF1ab/nsp2575E575GgAagGa22B.1.4290.000047
ORF1ab/nsp2575E575KGaaAaa22B.1.4700.002809
ORF1ab/nsp2575E575KGaaAaa22B.1.5050.008772
ORF1ab/nsp2575E575KGaaAaa22B.1.5260.000047
ORF1ab/nsp2575E575KGaaAaa22B.1.5950.000522
ORF1ab/nsp2575E575KGaaAaa22B.1.617.30.00597
ORF1ab/nsp2575E575DgaAgaC22B.1.6210.000177
ORF1ab/nsp2575E575delGAA---22N.60.014184
ORF1ab/nsp2575E575delGAA---22P.10.000032
ORF1ab/nsp2575E575GgAagGa11A.20.000662
ORF1ab/nsp2575E575EgaAgaG11A.2.40.003367
ORF1ab/nsp2575E575VgAagTa11A.2.50.000499
ORF1ab/nsp2575E575KGaaAaa11A.2.5.10.004808
ORF1ab/nsp2575E575del1gAag-a11All0
ORF1ab/nsp2575E575RGAACGT11All0
ORF1ab/nsp2575E575KGaaAaa11AU.30.00211
ORF1ab/nsp2575E575RGAACGT11AY.1010.00049
ORF1ab/nsp2575E575XGaATaG11AY.1010.00049
ORF1ab/nsp2575E575KGaaAaa11AY.1020.000027
ORF1ab/nsp2575E575DgaAgaT11AY.1020.000027
ORF1ab/nsp2575E575GgAagGa11AY.1030.000006
ORF1ab/nsp2575E575KGaaAaa11AY.1060.000335
ORF1ab/nsp2575E575delGAA---11AY.1080.001103
ORF1ab/nsp2575E575GgAagGa11AY.1100.000113
ORF1ab/nsp2575E575delGAA---11AY.1110.000183
ORF1ab/nsp2575E575VgAagTa11AY.1130.000142
ORF1ab/nsp2575E575GgAagGa11AY.1130.000142
ORF1ab/nsp2575E575QGaaCaa11AY.1190.000035
ORF1ab/nsp2575E575KGaaAaa11AY.1190.000035
ORF1ab/nsp2575E575EgaAgaG11AY.1200.000037
ORF1ab/nsp2575E575GgAagGa11AY.1210.000135
ORF1ab/nsp2575E575KGaaAaa11AY.130.000161
ORF1ab/nsp2575E575QGaaCaa11AY.130.000161
ORF1ab/nsp2575E575delGAA---11AY.190.00114
ORF1ab/nsp2575E575DgaAgaT11AY.230.00007
ORF1ab/nsp2575E575delGAA---11AY.240.000431
ORF1ab/nsp2575E575delGAA---11AY.250.000006
ORF1ab/nsp2575E575DgaAgaT11AY.250.000006
ORF1ab/nsp2575E575KGaaAaa11AY.260.000028
ORF1ab/nsp2575E575delGAA---11AY.290.000016
ORF1ab/nsp2575E575KGaaAaa11AY.290.000016
ORF1ab/nsp2575E575GgAagGa11AY.290.000016
ORF1ab/nsp2575E575EgaAgaG11AY.290.000016
ORF1ab/nsp2575E575delGAA---11AY.30.00001
ORF1ab/nsp2575E575KGaaAaa11AY.30.00001
ORF1ab/nsp2575E575KGaaAaa11AY.300.000396
ORF1ab/nsp2575E575DgaAgaC11AY.330.000067
ORF1ab/nsp2575E575EgaAgaG11AY.360.000148
ORF1ab/nsp2575E575VgAagTa11AY.40.000002
ORF1ab/nsp2575E575delGAA---11AY.40.000002
ORF1ab/nsp2575E575KGaaAaa11AY.4.10.000737
ORF1ab/nsp2575E575KGaaAaa11AY.4.20.000022
ORF1ab/nsp2575E575EgaAgaG11AY.4.40.000409
ORF1ab/nsp2575E575delGAA---11AY.4.50.000107
ORF1ab/nsp2575E575delGAA---11AY.420.00004
ORF1ab/nsp2575E575XGaaTaa11AY.430.000004
ORF1ab/nsp2575E575GgAagGa11AY.430.000004
ORF1ab/nsp2575E575XGaaTaa11AY.440.000006
ORF1ab/nsp2575E575VgAagTa11AY.450.000122
ORF1ab/nsp2575E575EgaAgaG11AY.5.40.000277
ORF1ab/nsp2575E575KGaaAaa11AY.530.000288
ORF1ab/nsp2575E575DgaAgaC11AY.550.000917
ORF1ab/nsp2575E575XGaATaG11AY.550.000917
ORF1ab/nsp2575E575delGAA---11AY.60.000041
ORF1ab/nsp2575E575KGaaAaa11AY.610.000105
ORF1ab/nsp2575E575XGaATaG11AY.610.000105
ORF1ab/nsp2575E575EgaAgaG11AY.680.000274
ORF1ab/nsp2575E575XGAaTGa11AY.710.000475
ORF1ab/nsp2575E575KGaaAaa11AY.710.000475
ORF1ab/nsp2575E575GgAagGa11AY.750.000056
ORF1ab/nsp2575E575DgaAgaT11AY.800.001129
ORF1ab/nsp2575E575KGaaAaa11AY.920.000287
ORF1ab/nsp2575E575KGaaAaa11AY.980.000079
ORF1ab/nsp2575E575VgAagTa11AY.98.10.000048
ORF1ab/nsp2575E575EgaAgaG11AY.99.20.000092
ORF1ab/nsp2575E575DgaAgaT11AY.99.20.000092
ORF1ab/nsp2575E575EgaAgaG11B0.000128
ORF1ab/nsp2575E575XGaaTaa11B.10.000009
ORF1ab/nsp2575E575QGaaCaa11B.10.000009
ORF1ab/nsp2575E575AgAagCa11B.10.000009
ORF1ab/nsp2575E575XGaaTaa11B.1.10.000018
ORF1ab/nsp2575E575GgAagGa11B.1.10.000018
ORF1ab/nsp2575E575KGaaAaa11B.1.1.1530.001095
ORF1ab/nsp2575E575KGaaAaa11B.1.1.1700.001247
ORF1ab/nsp2575E575delGAA---11B.1.1.2070.001182
ORF1ab/nsp2575E575KGaaAaa11B.1.1.250.000569
ORF1ab/nsp2575E575GgAagGa11B.1.1.2910.000742
ORF1ab/nsp2575E575EgaAgaG11B.1.1.3090.005848
ORF1ab/nsp2575E575VgAagTa11B.1.1.3180.000302
ORF1ab/nsp2575E575KGaaAaa11B.1.1.3260.001761
ORF1ab/nsp2575E575delGAA---11B.1.1.4160.000905
ORF1ab/nsp2575E575AgAagCa11B.1.1.4420.018519
ORF1ab/nsp2575E575delGAA---11B.1.1.4480.002033
ORF1ab/nsp2575E575DgaAgaC11B.1.1.4480.002033
ORF1ab/nsp2575E575EgaAgaG11B.1.1.500.000679
ORF1ab/nsp2575E575EgaAgaG11B.1.1.5190.00004
ORF1ab/nsp2575E575del1gAag-a11B.1.1.70.000001
ORF1ab/nsp2575E575QGaaCaa11B.1.1.70.000001
ORF1ab/nsp2575E575XGaaTaa11B.1.1.70.000001
ORF1ab/nsp2575E575GgAAgGG11B.1.1570.002985
ORF1ab/nsp2575E575KGaaAaa11B.1.1600.000031
ORF1ab/nsp2575E575GgAagGa11B.1.1770.000013
ORF1ab/nsp2575E575KGaaAaa11B.1.177.100.000878
ORF1ab/nsp2575E575QGaaCaa11B.1.177.560.000668
ORF1ab/nsp2575E575KGaaAaa11B.1.177.600.000218
ORF1ab/nsp2575E575DgaAgaT11B.1.177.600.000218
ORF1ab/nsp2575E575delGAA---11B.1.177.830.001481
ORF1ab/nsp2575E575GgAagGa11B.1.20.000009
ORF1ab/nsp2575E575EgaAgaG11B.1.20.000009
ORF1ab/nsp2575E575KGaaAaa11B.1.2100.002132
ORF1ab/nsp2575E575KGaaAaa11B.1.2340.000132
ORF1ab/nsp2575E575EgaAgaG11B.1.2430.00007
ORF1ab/nsp2575E575AgAagCa11B.1.2480.029412
ORF1ab/nsp2575E575EgaAgaG11B.1.3510.00003
ORF1ab/nsp2575E575EgaAgaG11B.1.351.20.000303
ORF1ab/nsp2575E575KGaaAaa11B.1.360.000146
ORF1ab/nsp2575E575KGaaAaa11B.1.36.100.004785
ORF1ab/nsp2575E575KGaaAaa11B.1.36.170.000494
ORF1ab/nsp2575E575delGAA---11B.1.36.180.00042
ORF1ab/nsp2575E575DgaAgaC11B.1.36.220.001208
ORF1ab/nsp2575E575KGaaAaa11B.1.36.270.000763
ORF1ab/nsp2575E575delGAA---11B.1.36.380.001642
ORF1ab/nsp2575E575GgAagGa11B.1.3750.00082
ORF1ab/nsp2575E575AgAagCa11B.1.4520.013699
ORF1ab/nsp2575E575KGaaAaa11B.1.5200.021739
ORF1ab/nsp2575E575AgAagCa11B.1.5250.000113
ORF1ab/nsp2575E575delGAA---11B.1.5610.000397
ORF1ab/nsp2575E575XGaaTaa11B.1.5820.000491
ORF1ab/nsp2575E575KGaaAaa11B.1.5960.000087
ORF1ab/nsp2575E575XGaATaG11B.1.617.20.000004
ORF1ab/nsp2575E575delGAA---11B.1.617.20.000004
ORF1ab/nsp2575E575GgAagGa11B.1.617.20.000004
ORF1ab/nsp2575E575VgAagTa11B.1.617.20.000004
ORF1ab/nsp2575E575QGaaCaa11B.1.617.20.000004
ORF1ab/nsp2575E575delGAA---11B.1.617.30.002985
ORF1ab/nsp2575E575KGaaAaa11B.1.6190.000871
ORF1ab/nsp2575E575EgaAgaG11B.1.619.10.000641
ORF1ab/nsp2575E575delGAA---11B.1.6210.000089
ORF1ab/nsp2575E575KGaaAaa11B.1.9.50.005682
ORF1ab/nsp2575E575KGaaAaa11B.4.10.018868
ORF1ab/nsp2575E575delGAA---11B.570.015152
ORF1ab/nsp2575E575KGaaAaa11C.10.002392
ORF1ab/nsp2575E575DgaAgaT11P.10.000016
ORF1ab/nsp2575E575EgaAgaG11P.1.150.000232
ORF1ab/nsp2575E575KGaaAaa11P.1.150.000232
ORF1ab/nsp2575E575EgaAgaG11P.1.60.001946