CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 575 | E575K | E755K | nonsyn | Gaa | Aaa | 2434 | 2434 | 1 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575E | E755E | syn | gaA | gaG | 524 | 524 | 1 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575D | E755D | nonsyn | gaA | gaT | 90 | 48 | 0.533333 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575D | E755D | nonsyn | gaA | gaC | 90 | 42 | 0.466667 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575del | E755del | del | GAA | --- | 65 | 65 | 1 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575G | E755G | nonsyn | gAa | gGa | 51 | 49 | 0.960784 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575G | E755G | nonsyn | gAA | gGG | 51 | 2 | 0.0392157 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575V | E755V | nonsyn | gAa | gTa | 41 | 41 | 1 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575A | E755A | nonsyn | gAa | gCa | 23 | 23 | 1 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575X | E755X | nonsyn | Gaa | Taa | 11 | 6 | 0.545455 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575X | E755X | nonsyn | GaA | TaG | 11 | 4 | 0.363636 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575X | E755X | nonsyn | GAa | TGa | 11 | 1 | 0.0909091 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575Q | E755Q | nonsyn | Gaa | Caa | 6 | 6 | 1 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575del1 | E755del1 | del | gAa | g-a | 1 | 1 | 1 | 2528-2530 |
ORF1ab/nsp2 | 575 | E575R | E755R | nonsyn | GAA | CGT | 1 | 1 | 1 | 2528-2530 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 2434 | 2434 | All | 0.000466 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1934 | 1934 | B.1.279 | 0.993323 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 524 | 524 | All | 0.0001 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 178 | 178 | B.1.617.2 | 0.00067 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 175 | 175 | B.1.1.7 | 0.000157 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 48 | 90 | All | 0.000009 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 42 | 90 | All | 0.000008 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 68 | 68 | B.6 | 0.061874 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 65 | 65 | All | 0.000012 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 61 | 61 | AY.102 | 0.001617 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 56 | 56 | B.1.177 | 0.000737 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 49 | 51 | All | 0.000009 |
ORF1ab/nsp2 | 575 | E575G | gAA | gGG | 2 | 51 | All | 0 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 50 | 50 | B.1.1.7 | 0.000045 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 46 | 46 | AY.25 | 0.000277 |
ORF1ab/nsp2 | 575 | E575V | gAa | gTa | 41 | 41 | All | 0.000008 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 41 | 41 | B.1.617.1 | 0.005288 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 28 | 28 | AY.4 | 0.000044 |
ORF1ab/nsp2 | 575 | E575A | gAa | gCa | 23 | 23 | All | 0.000004 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 21 | 21 | AY.39 | 0.000519 |
ORF1ab/nsp2 | 575 | E575V | gAa | gTa | 19 | 19 | AY.4.5 | 0.002042 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 18 | 18 | B.1.1.226 | 0.104651 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 575 | E575A | gAa | gCa | 14 | 14 | AY.47 | 0.000435 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 14 | 14 | B.1.380 | 0.092715 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 12 | 13 | B.1.427 | 0.000606 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 1 | 13 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 12 | 12 | B | 0.001534 |
ORF1ab/nsp2 | 575 | E575X | Gaa | Taa | 6 | 11 | All | 0.000001 |
ORF1ab/nsp2 | 575 | E575X | GaA | TaG | 4 | 11 | All | 0.000001 |
ORF1ab/nsp2 | 575 | E575X | GAa | TGa | 1 | 11 | All | 0 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 7 | 10 | B.1.1.7 | 0.000006 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 3 | 10 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 9 | 9 | A | 0.003483 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 9 | 9 | AY.117 | 0.000761 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 7 | 9 | AY.4 | 0.000011 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 2 | 9 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 575 | E575V | gAa | gTa | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 8 | 8 | B.1.157 | 0.023881 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 7 | 7 | B.1.1.241 | 0.014493 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp2 | 575 | E575Q | Gaa | Caa | 6 | 6 | All | 0.000001 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 6 | 6 | AY.116 | 0.001721 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp2 | 575 | E575V | gAa | gTa | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 6 | 6 | B.1.177.12 | 0.00091 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 6 | 6 | B.1.564 | 0.002555 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 4 | 5 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 1 | 5 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 4 | 4 | AY.62 | 0.001743 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp2 | 575 | E575G | gAA | gGG | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 3 | 3 | B.1.507 | 0.033708 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 575 | E575A | gAa | gCa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 575 | E575A | gAa | gCa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 2 | 2 | B.1.505 | 0.008772 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 2 | 2 | B.1.617.3 | 0.00597 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp2 | 575 | E575V | gAa | gTa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp2 | 575 | E575del1 | gAa | g-a | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 575 | E575R | GAA | CGT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp2 | 575 | E575R | GAA | CGT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 575 | E575X | GaA | TaG | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 575 | E575V | gAa | gTa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 575 | E575Q | Gaa | Caa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 575 | E575Q | Gaa | Caa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 575 | E575V | gAa | gTa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 575 | E575X | Gaa | Taa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 575 | E575X | Gaa | Taa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 575 | E575V | gAa | gTa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 575 | E575X | GaA | TaG | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 575 | E575X | GaA | TaG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 575 | E575X | GAa | TGa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 575 | E575V | gAa | gTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 575 | E575X | Gaa | Taa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 575 | E575Q | Gaa | Caa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 575 | E575A | gAa | gCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 575 | E575X | Gaa | Taa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp2 | 575 | E575V | gAa | gTa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 575 | E575A | gAa | gCa | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 575 | E575del1 | gAa | g-a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 575 | E575Q | Gaa | Caa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 575 | E575X | Gaa | Taa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 575 | E575G | gAA | gGG | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp2 | 575 | E575Q | Gaa | Caa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 575 | E575A | gAa | gCa | 1 | 1 | B.1.248 | 0.029412 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaC | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 575 | E575A | gAa | gCa | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp2 | 575 | E575A | gAa | gCa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 575 | E575X | Gaa | Taa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 575 | E575X | GaA | TaG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 575 | E575G | gAa | gGa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 575 | E575V | gAa | gTa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 575 | E575Q | Gaa | Caa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp2 | 575 | E575del | GAA | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp2 | 575 | E575D | gaA | gaT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 575 | E575K | Gaa | Aaa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 575 | E575E | gaA | gaG | 1 | 1 | P.1.6 | 0.001946 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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