CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 574 | E574D | E754D | nonsyn | gaG | gaT | 2459 | 2444 | 0.9939 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574D | E754D | nonsyn | gaG | gaC | 2459 | 15 | 0.00610004 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574K | E754K | nonsyn | Gag | Aag | 1459 | 1455 | 0.997258 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574K | E754K | nonsyn | GaG | AaA | 1459 | 4 | 0.0027416 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574E | E754E | syn | gaG | gaA | 1341 | 1341 | 1 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574G | E754G | nonsyn | gAg | gGg | 409 | 405 | 0.99022 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574G | E754G | nonsyn | gAG | gGA | 409 | 4 | 0.00977995 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574A | E754A | nonsyn | gAg | gCg | 122 | 121 | 0.991803 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574A | E754A | nonsyn | gAG | gCA | 122 | 1 | 0.00819672 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574del | E754del | del | GAG | --- | 63 | 63 | 1 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574V | E754V | nonsyn | gAg | gTg | 34 | 33 | 0.970588 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574V | E754V | nonsyn | gAG | gTA | 34 | 1 | 0.0294118 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574del1 | E754del1 | del | gaG | ga- | 14 | 13 | 0.928571 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574del1 | E754del1 | del | Gag | -ag | 14 | 1 | 0.0714286 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574X | E754X | nonsyn | Gag | Tag | 11 | 11 | 1 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574Q | E754Q | nonsyn | Gag | Cag | 11 | 11 | 1 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574R | E754R | nonsyn | GAG | AGA | 7 | 5 | 0.714286 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574R | E754R | nonsyn | GAg | AGg | 7 | 2 | 0.285714 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574T | E754T | nonsyn | GAg | ACg | 2 | 1 | 0.5 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574T | E754T | nonsyn | GAG | ACA | 2 | 1 | 0.5 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574M | E754M | nonsyn | GAg | ATg | 1 | 1 | 1 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574del2 | E754del2 | del | gAG | g-- | 1 | 1 | 1 | 2525-2527 |
ORF1ab/nsp2 | 574 | E574I | E754I | nonsyn | GAG | ATA | 1 | 1 | 1 | 2525-2527 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2444 | 2459 | All | 0.000467 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaC | 15 | 2459 | All | 0.000003 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1455 | 1459 | All | 0.000278 |
ORF1ab/nsp2 | 574 | E574K | GaG | AaA | 4 | 1459 | All | 0.000001 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1341 | 1341 | All | 0.000256 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1204 | 1204 | B.1.1.7 | 0.001078 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 828 | 828 | AY.25 | 0.00498 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 405 | 409 | All | 0.000077 |
ORF1ab/nsp2 | 574 | E574G | gAG | gGA | 4 | 409 | All | 0.000001 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 370 | 370 | B.1.2 | 0.003258 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 287 | 287 | AY.4 | 0.000447 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 227 | 228 | AY.43 | 0.001006 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaC | 1 | 228 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 135 | 135 | AY.3 | 0.001343 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 131 | 132 | B.1.617.2 | 0.000493 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaC | 1 | 132 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 127 | 127 | B.1.2 | 0.001118 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 121 | 122 | All | 0.000023 |
ORF1ab/nsp2 | 574 | E574A | gAG | gCA | 1 | 122 | All | 0 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 115 | 115 | AY.36 | 0.017045 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 93 | 93 | B.1.554 | 0.409692 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 77 | 77 | AY.3 | 0.000766 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 77 | 77 | B.1.1.7 | 0.000069 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 73 | 73 | B.1.1.55 | 0.948052 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 71 | 71 | AY.4.5 | 0.007632 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 66 | 67 | B.1.1.7 | 0.000059 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaC | 1 | 67 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 66 | 66 | B.1.517 | 0.028181 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 64 | 64 | P.1.15 | 0.01487 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 63 | 63 | All | 0.000012 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 62 | 62 | B.1.177.36 | 1 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 59 | 59 | B.1.1.7 | 0.000053 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 55 | 55 | AY.29 | 0.000868 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 53 | 53 | AY.33 | 0.003539 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 52 | 52 | AZ.2 | 0.042693 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 50 | 50 | AY.4 | 0.000078 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 44 | 44 | B.1.177 | 0.000579 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 44 | 44 | B.1.349 | 0.031451 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 40 | 40 | AY.44 | 0.000243 |
ORF1ab/nsp2 | 574 | E574V | gAg | gTg | 33 | 34 | All | 0.000006 |
ORF1ab/nsp2 | 574 | E574V | gAG | gTA | 1 | 34 | All | 0 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 32 | 32 | AY.84 | 0.013998 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 29 | 29 | AY.9.2 | 0.001065 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 28 | 28 | B.1.22 | 0.036891 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 28 | 28 | B.1.36 | 0.004085 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 24 | 24 | B.1.1.63 | 0.009259 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 23 | 23 | AY.113 | 0.003275 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 23 | 23 | B.1.575 | 0.006978 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 22 | 22 | AY.4.2.1 | 0.003278 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 19 | 20 | AY.25 | 0.000114 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaC | 1 | 20 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 20 | 20 | B.1.177.8 | 0.015049 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 19 | 19 | P.1.17 | 0.003073 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 18 | 18 | AY.71 | 0.008551 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 17 | 18 | B.1 | 0.000156 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaC | 1 | 18 | B.1 | 0.000009 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 17 | 17 | AY.4.2 | 0.000369 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 17 | 17 | B.1.1.301 | 0.020047 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp2 | 574 | E574V | gAg | gTg | 16 | 16 | B.1.551 | 0.020645 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 16 | 16 | Q.1 | 0.002021 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 15 | 15 | AY.75 | 0.00084 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 15 | 15 | B.1.429 | 0.000353 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 15 | 15 | B.1.596 | 0.001307 |
ORF1ab/nsp2 | 574 | E574del1 | gaG | ga- | 13 | 14 | All | 0.000002 |
ORF1ab/nsp2 | 574 | E574del1 | Gag | -ag | 1 | 14 | All | 0 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 13 | 13 | B.1.426 | 0.013118 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 7 | 12 | AY.26 | 0.000198 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaC | 5 | 12 | AY.26 | 0.000142 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 12 | 12 | AY.36 | 0.001779 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp2 | 574 | E574X | Gag | Tag | 11 | 11 | All | 0.000002 |
ORF1ab/nsp2 | 574 | E574Q | Gag | Cag | 11 | 11 | All | 0.000002 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 9 | 9 | AY.5 | 0.000186 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 8 | 9 | B.1 | 0.000073 |
ORF1ab/nsp2 | 574 | E574G | gAG | gGA | 1 | 9 | B.1 | 0.000009 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 9 | 9 | B.1.1.265 | 0.028391 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 8 | 8 | A.2.5 | 0.003992 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 8 | 8 | B.1.1.261 | 0.068966 |
ORF1ab/nsp2 | 574 | E574Q | Gag | Cag | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp2 | 574 | E574R | GAG | AGA | 5 | 7 | All | 0.000001 |
ORF1ab/nsp2 | 574 | E574R | GAg | AGg | 2 | 7 | All | 0 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 7 | 7 | B.1.177.73 | 0.003964 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 7 | 7 | B.1.177.86 | 0.001284 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 6 | 6 | AY.111 | 0.001099 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp2 | 574 | E574V | gAg | gTg | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 5 | 6 | AY.43 | 0.000022 |
ORF1ab/nsp2 | 574 | E574G | gAG | gGA | 1 | 6 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaC | 3 | 6 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 3 | 6 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 6 | 6 | B.1.1.368 | 0.018519 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 5 | 5 | B.1.1.163 | 0.038168 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 4 | 4 | AY.120.1 | 0.001284 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 574 | E574X | Gag | Tag | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 4 | 4 | B.1.177.28 | 0.02963 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 2 | 4 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 574 | E574K | GaG | AaA | 2 | 4 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 4 | 4 | B.1.505 | 0.017544 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 2 | 3 | 0.111111 | |
ORF1ab/nsp2 | 574 | E574K | GaG | AaA | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp2 | 574 | E574del1 | gaG | ga- | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 3 | 3 | AY.76 | 0.014493 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 574 | E574V | gAg | gTg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 3 | 3 | B.1.383 | 0.027027 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 574 | E574R | GAg | AGg | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 574 | E574V | gAg | gTg | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 574 | E574G | gAG | gGA | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 574 | E574V | gAG | gTA | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 574 | E574R | GAG | AGA | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 574 | E574T | GAg | ACg | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 574 | E574T | GAG | ACA | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 574 | E574V | gAg | gTg | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 574 | E574K | GaG | AaA | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | B.1.1.362 | 0.011236 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | B.1.1.453 | 0.016949 |
ORF1ab/nsp2 | 574 | E574del1 | gaG | ga- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp2 | 574 | E574del1 | gaG | ga- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 574 | E574R | GAG | AGA | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 574 | E574T | GAg | ACg | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 574 | E574R | GAg | AGg | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 574 | E574A | gAG | gCA | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 574 | E574T | GAG | ACA | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 574 | E574G | gAG | gGA | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | C.26 | 0.014706 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaC | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 574 | E574I | GAG | ATA | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 574 | E574M | GAg | ATg | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 574 | E574del2 | gAG | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 574 | E574I | GAG | ATA | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 574 | E574M | GAg | ATg | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 574 | E574del1 | gaG | ga- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 574 | E574X | Gag | Tag | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 574 | E574del2 | gAG | g-- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 574 | E574V | gAg | gTg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 574 | E574R | GAG | AGA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 574 | E574R | GAG | AGA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 574 | E574X | Gag | Tag | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp2 | 574 | E574V | gAg | gTg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp2 | 574 | E574X | Gag | Tag | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 574 | E574X | Gag | Tag | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 574 | E574del1 | gaG | ga- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 574 | E574del1 | gaG | ga- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.1.423 | 0.0625 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.1.514 | 0.038462 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | B.1.12 | 0.008 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.162 | 0.005025 |
ORF1ab/nsp2 | 574 | E574X | Gag | Tag | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 574 | E574V | gAg | gTg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp2 | 574 | E574del1 | gaG | ga- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp2 | 574 | E574X | Gag | Tag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 574 | E574Q | Gag | Cag | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 574 | E574X | Gag | Tag | 1 | 1 | B.1.328 | 0.03125 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.341 | 0.022727 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 574 | E574Q | Gag | Cag | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.532 | 0.006211 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp2 | 574 | E574del1 | gaG | ga- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 574 | E574del1 | Gag | -ag | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 574 | E574del1 | gaG | ga- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 574 | E574R | GAG | AGA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 574 | E574V | gAg | gTg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 574 | E574del | GAG | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 574 | E574Q | Gag | Cag | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 574 | E574G | gAg | gGg | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 574 | E574V | gAg | gTg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 574 | E574A | gAg | gCg | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 574 | E574K | Gag | Aag | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 574 | E574E | gaG | gaA | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 574 | E574D | gaG | gaT | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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