CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 571 & Codon = gtT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2571V571VV751VsyngtGgtT32113314840.9804132516-2518

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2571V571VgtGgtT3148432113All0.006022
ORF1ab/nsp2571V571VgtGgtT1988219882AY.98.10.962902
ORF1ab/nsp2571V571VgtGgtT68096833B.1.617.20.025639
ORF1ab/nsp2571V571VgtGgtT36903694AY.980.291492
ORF1ab/nsp2571V571VgtGgtT122228AY.40.00019
ORF1ab/nsp2571V571VgtGgtT211214AY.430.000935
ORF1ab/nsp2571V571VgtGgtT3195AY.530.000863
ORF1ab/nsp2571V571VgtGgtT61115B.1.1.70.000055
ORF1ab/nsp2571V571VgtGgtT4872AY.440.000292
ORF1ab/nsp2571V571VgtGgtT7070AY.420.002816
ORF1ab/nsp2571V571VgtGgtT6165B.1.20.000537
ORF1ab/nsp2571V571VgtGgtT6363B.1.258.201
ORF1ab/nsp2571V571VgtGgtT557AY.30.00005
ORF1ab/nsp2571V571VgtGgtT5454B.1.1.5190.002144
ORF1ab/nsp2571V571VgtGgtT4646AY.1080.050717
ORF1ab/nsp2571V571VgtGgtT4345AY.250.000259
ORF1ab/nsp2571V571VgtGgtT2424AY.46.40.003948
ORF1ab/nsp2571V571VgtGgtT2323B.1.5260.000541
ORF1ab/nsp2571V571VgtGgtT2222AY.1190.000777
ORF1ab/nsp2571V571VgtGgtT122AY.470.000031
ORF1ab/nsp2571V571VgtGgtT1919AY.50.000392
ORF1ab/nsp2571V571VgtGgtT116AY.90.000068
ORF1ab/nsp2571V571VgtGgtT1216B.10.00011
ORF1ab/nsp2571V571VgtGgtT1215AY.1030.000075
ORF1ab/nsp2571V571VgtGgtT114P.1.140.000048
ORF1ab/nsp2571V571VgtGgtT810B.1.10.000145
ORF1ab/nsp2571V571VgtGgtT99AY.460.000937
ORF1ab/nsp2571V571VgtGgtT29AY.610.00021
ORF1ab/nsp2571V571VgtGgtT19B.1.1.4330.001425
ORF1ab/nsp2571V571VgtGgtT88AY.3.10.000682
ORF1ab/nsp2571V571VgtGgtT58AY.390.000124
ORF1ab/nsp2571V571VgtGgtT88B.1.4270.000404
ORF1ab/nsp2571V571VgtGgtT88P.1.40.007812
ORF1ab/nsp2571V571VgtGgtT66AY.1200.000223
ORF1ab/nsp2571V571VgtGgtT66AY.46.60.000433
ORF1ab/nsp2571V571VgtGgtT66AY.800.006772
ORF1ab/nsp2571V571VgtGgtT46B.1.1770.000053
ORF1ab/nsp2571V571VgtGgtT66B.1.177.520.010545
ORF1ab/nsp2571V571VgtGgtT45AY.1020.000106
ORF1ab/nsp2571V571VgtGgtT55AY.840.002187
ORF1ab/nsp2571V571VgtGgtT55B.1.177.210.000382
ORF1ab/nsp2571V571VgtGgtT45P.1.70.001277
ORF1ab/nsp2571V571VgtGgtT44AY.950.003044
ORF1ab/nsp2571V571VgtGgtT44B.1.4290.000094
ORF1ab/nsp2571V571VgtGgtT44B.1.617.10.000516
ORF1ab/nsp2571V571VgtGgtT44P.10.000063
ORF1ab/nsp2571V571VgtGgtT44P.1.10.001271
ORF1ab/nsp2571V571VgtGgtT33AY.1050.001929
ORF1ab/nsp2571V571VgtGgtT23AY.1060.00067
ORF1ab/nsp2571V571VgtGgtT33AY.1110.000549
ORF1ab/nsp2571V571VgtGgtT23AY.4.20.000043
ORF1ab/nsp2571V571VgtGgtT13AY.480.000465
ORF1ab/nsp2571V571VgtGgtT33AY.5.30.001012
ORF1ab/nsp2571V571VgtGgtT33AY.690.00056
ORF1ab/nsp2571V571VgtGgtT23AY.9.20.000073
ORF1ab/nsp2571V571VgtGgtT33AY.930.000819
ORF1ab/nsp2571V571VgtGgtT33AY.990.003148
ORF1ab/nsp2571V571VgtGgtT23B.1.2430.000139
ORF1ab/nsp2571V571VgtGgtT33B.1.351.20.000908
ORF1ab/nsp2571V571VgtGgtT33B.1.36.80.003
ORF1ab/nsp2571V571VgtGgtT22AY.1090.001479
ORF1ab/nsp2571V571VgtGgtT22AY.1130.000285
ORF1ab/nsp2571V571VgtGgtT22AY.1170.000169
ORF1ab/nsp2571V571VgtGgtT22AY.1210.000271
ORF1ab/nsp2571V571VgtGgtT22AY.4.40.000818
ORF1ab/nsp2571V571VgtGgtT22AY.450.000243
ORF1ab/nsp2571V571VgtGgtT12AY.60.000041
ORF1ab/nsp2571V571VgtGgtT22AY.740.000231
ORF1ab/nsp2571V571VgtGgtT22AY.820.002714
ORF1ab/nsp2571V571VgtGgtT22P.1.150.000465
ORF1ab/nsp2571V571VgtGgtT11AY.1000.000046
ORF1ab/nsp2571V571VgtGgtT11AY.1010.00049
ORF1ab/nsp2571V571VgtGgtT11AY.120.20.001285
ORF1ab/nsp2571V571VgtGgtT11AY.160.00038
ORF1ab/nsp2571V571VgtGgtT11AY.190.00114
ORF1ab/nsp2571V571VgtGgtT11AY.230.00007
ORF1ab/nsp2571V571VgtGgtT11AY.320.000532
ORF1ab/nsp2571V571VgtGgtT11AY.330.000067
ORF1ab/nsp2571V571VgtGgtT11AY.410.000294
ORF1ab/nsp2571V571VgtGgtT11AY.46.20.000635
ORF1ab/nsp2571V571VgtGgtT11AY.540.000095
ORF1ab/nsp2571V571VgtGgtT11AY.660.00107
ORF1ab/nsp2571V571VgtGgtT11AY.670.000464
ORF1ab/nsp2571V571VgtGgtT11AY.720.001361
ORF1ab/nsp2571V571VgtGgtT11AY.730.000665
ORF1ab/nsp2571V571VgtGgtT11AY.790.001211
ORF1ab/nsp2571V571VgtGgtT11AY.830.001724
ORF1ab/nsp2571V571VgtGgtT11AY.850.000427
ORF1ab/nsp2571V571VgtGgtT11AY.940.000443
ORF1ab/nsp2571V571VgtGgtT11AY.99.20.000092
ORF1ab/nsp2571V571VgtGgtT11B.1.1.2190.005
ORF1ab/nsp2571V571VgtGgtT11B.1.177.810.000189
ORF1ab/nsp2571V571VgtGgtT11B.1.177.820.000477
ORF1ab/nsp2571V571VgtGgtT11B.1.2210.000071
ORF1ab/nsp2571V571VgtGgtT11B.1.2470.014925
ORF1ab/nsp2571V571VgtGgtT11B.1.4090.000781
ORF1ab/nsp2571V571VgtGgtT11B.1.4320.011236
ORF1ab/nsp2571V571VgtGgtT11B.1.5250.000113
ORF1ab/nsp2571V571VgtGgtT11B.1.6190.000871
ORF1ab/nsp2571V571VgtGgtT11B.1.90.006173
ORF1ab/nsp2571V571VgtGgtT11C.360.000911
ORF1ab/nsp2571V571VgtGgtT11C.37.10.002618
ORF1ab/nsp2571V571VgtGgtT11D.20.000075
ORF1ab/nsp2571V571VgtGgtT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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