CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 571 & Codon = gtA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2571V571VV751VsyngtGgtA321135990.01865292516-2518

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2571V571VgtGgtA59932113All0.000115
ORF1ab/nsp2571V571VgtGgtA106833B.1.617.20.000038
ORF1ab/nsp2571V571VgtGgtA13694AY.980.000079
ORF1ab/nsp2571V571VgtGgtA104228AY.40.000162
ORF1ab/nsp2571V571VgtGgtA3214AY.430.000013
ORF1ab/nsp2571V571VgtGgtA192195AY.530.055204
ORF1ab/nsp2571V571VgtGgtA54115B.1.1.70.000048
ORF1ab/nsp2571V571VgtGgtA2472AY.440.000146
ORF1ab/nsp2571V571VgtGgtA465B.1.20.000035
ORF1ab/nsp2571V571VgtGgtA5257AY.30.000517
ORF1ab/nsp2571V571VgtGgtA245AY.250.000012
ORF1ab/nsp2571V571VgtGgtA2122AY.470.000653
ORF1ab/nsp2571V571VgtGgtA1516AY.90.001014
ORF1ab/nsp2571V571VgtGgtA416B.10.000037
ORF1ab/nsp2571V571VgtGgtA315AY.1030.000019
ORF1ab/nsp2571V571VgtGgtA1314P.1.140.000621
ORF1ab/nsp2571V571VgtGgtA1111AY.7.10.00124
ORF1ab/nsp2571V571VgtGgtA210B.1.10.000036
ORF1ab/nsp2571V571VgtGgtA99AY.260.000255
ORF1ab/nsp2571V571VgtGgtA79AY.610.000733
ORF1ab/nsp2571V571VgtGgtA89B.1.1.4330.011396
ORF1ab/nsp2571V571VgtGgtA99B.1.5780.160714
ORF1ab/nsp2571V571VgtGgtA38AY.390.000074
ORF1ab/nsp2571V571VgtGgtA26B.1.1770.000026
ORF1ab/nsp2571V571VgtGgtA66B.1.351.30.005259
ORF1ab/nsp2571V571VgtGgtA15AY.1020.000027
ORF1ab/nsp2571V571VgtGgtA55B.1.1.1760.002197
ORF1ab/nsp2571V571VgtGgtA15P.1.70.000319
ORF1ab/nsp2571V571VgtGgtA13AY.1060.000335
ORF1ab/nsp2571V571VgtGgtA13AY.4.20.000022
ORF1ab/nsp2571V571VgtGgtA23AY.480.00093
ORF1ab/nsp2571V571VgtGgtA13AY.9.20.000037
ORF1ab/nsp2571V571VgtGgtA33B.1.1.630.001157
ORF1ab/nsp2571V571VgtGgtA13B.1.2430.00007
ORF1ab/nsp2571V571VgtGgtA33B.1.6050.017857
ORF1ab/nsp2571V571VgtGgtA22AY.140.000176
ORF1ab/nsp2571V571VgtGgtA12AY.60.000041
ORF1ab/nsp2571V571VgtGgtA22AY.860.00166
ORF1ab/nsp2571V571VgtGgtA22B.1.177.150.001262
ORF1ab/nsp2571V571VgtGgtA22P.20.000373
ORF1ab/nsp2571V571VgtGgtA110.055556
ORF1ab/nsp2571V571VgtGgtA11A.20.000662
ORF1ab/nsp2571V571VgtGgtA11AE.80.000489
ORF1ab/nsp2571V571VgtGgtA11AY.16.10.00047
ORF1ab/nsp2571V571VgtGgtA11AY.23.10.000417
ORF1ab/nsp2571V571VgtGgtA11AY.680.000274
ORF1ab/nsp2571V571VgtGgtA11B.1.1.1570.000913
ORF1ab/nsp2571V571VgtGgtA11B.1.1.280.000311
ORF1ab/nsp2571V571VgtGgtA11B.1.1.2980.000862
ORF1ab/nsp2571V571VgtGgtA11B.1.3110.000275
ORF1ab/nsp2571V571VgtGgtA11B.1.6180.004032
ORF1ab/nsp2571V571VgtGgtA11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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