CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 571 & Codon = Atg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2571V571MV751MnonsynGtgAtg85585512516-2518

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2571V571MGtgAtg855855All0.000164
ORF1ab/nsp2571V571MGtgAtg757757AY.40.001178
ORF1ab/nsp2571V571MGtgAtg3131B.1.617.20.000117
ORF1ab/nsp2571V571MGtgAtg1111B.1.20.000097
ORF1ab/nsp2571V571MGtgAtg1010B.1.1.70.000009
ORF1ab/nsp2571V571MGtgAtg88B.1.5960.000697
ORF1ab/nsp2571V571MGtgAtg44C.370.000464
ORF1ab/nsp2571V571MGtgAtg33AY.160.001139
ORF1ab/nsp2571V571MGtgAtg33AY.390.000074
ORF1ab/nsp2571V571MGtgAtg33AY.430.000013
ORF1ab/nsp2571V571MGtgAtg33P.1.140.000143
ORF1ab/nsp2571V571MGtgAtg22AY.420.00008
ORF1ab/nsp2571V571MGtgAtg22B.1.1.3160.00185
ORF1ab/nsp2571V571MGtgAtg22C.360.001821
ORF1ab/nsp2571V571MGtgAtg110.055556
ORF1ab/nsp2571V571MGtgAtg11A.20.000662
ORF1ab/nsp2571V571MGtgAtg11AY.1020.000027
ORF1ab/nsp2571V571MGtgAtg11AY.1160.000287
ORF1ab/nsp2571V571MGtgAtg11AY.260.000028
ORF1ab/nsp2571V571MGtgAtg11AY.4.50.000107
ORF1ab/nsp2571V571MGtgAtg11AY.440.000006
ORF1ab/nsp2571V571MGtgAtg11AY.450.000122
ORF1ab/nsp2571V571MGtgAtg11B.10.000009
ORF1ab/nsp2571V571MGtgAtg11B.1.1.2220.000204
ORF1ab/nsp2571V571MGtgAtg11B.1.1.480.002874
ORF1ab/nsp2571V571MGtgAtg11B.1.1100.004525
ORF1ab/nsp2571V571MGtgAtg11B.1.177.330.001645
ORF1ab/nsp2571V571MGtgAtg11B.1.2210.000071
ORF1ab/nsp2571V571MGtgAtg11B.1.90.006173
ORF1ab/nsp2571V571MGtgAtg11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.