CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 564 & Codon = ggG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2564G564GG744GsynggAggG10497540.718782495-2497

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2564G564GggAggG7541049All0.000144
ORF1ab/nsp2564G564GggAggG131133AY.460.013634
ORF1ab/nsp2564G564GggAggG81129B.1.1.70.000073
ORF1ab/nsp2564G564GggAggG98117AY.40.000153
ORF1ab/nsp2564G564GggAggG6266AY.200.00241
ORF1ab/nsp2564G564GggAggG5458B.1.4290.001271
ORF1ab/nsp2564G564GggAggG1557B.1.1.5190.000596
ORF1ab/nsp2564G564GggAggG3451B.1.617.20.000128
ORF1ab/nsp2564G564GggAggG2333AY.430.000102
ORF1ab/nsp2564G564GggAggG2026B.1.1770.000263
ORF1ab/nsp2564G564GggAggG1525B.10.000137
ORF1ab/nsp2564G564GggAggG720AY.440.000043
ORF1ab/nsp2564G564GggAggG1119AY.390.000272
ORF1ab/nsp2564G564GggAggG814AY.1030.00005
ORF1ab/nsp2564G564GggAggG1014AY.30.000099
ORF1ab/nsp2564G564GggAggG1414B.1.2320.007523
ORF1ab/nsp2564G564GggAggG1213AY.1020.000318
ORF1ab/nsp2564G564GggAggG712B.1.20.000062
ORF1ab/nsp2564G564GggAggG710B.1.10.000127
ORF1ab/nsp2564G564GggAggG1010B.1.1.2770.007587
ORF1ab/nsp2564G564GggAggG99B.1.6090.004314
ORF1ab/nsp2564G564GggAggG79P.10.00011
ORF1ab/nsp2564G564GggAggG78AY.250.000042
ORF1ab/nsp2564G564GggAggG48AY.610.000419
ORF1ab/nsp2564G564GggAggG77B.1.1.3750.083333
ORF1ab/nsp2564G564GggAggG66B.1.4160.007614
ORF1ab/nsp2564G564GggAggG66P.30.009569
ORF1ab/nsp2564G564GggAggG45AY.260.000113
ORF1ab/nsp2564G564GggAggG35AY.99.20.000276
ORF1ab/nsp2564G564GggAggG55B.1.4760.5
ORF1ab/nsp2564G564GggAggG25B.1.617.10.000258
ORF1ab/nsp2564G564GggAggG44AY.1000.000184
ORF1ab/nsp2564G564GggAggG44AY.1170.000338
ORF1ab/nsp2564G564GggAggG14B0.000128
ORF1ab/nsp2564G564GggAggG24B.1.360.000292
ORF1ab/nsp2564G564GggAggG44B.1.5610.001588
ORF1ab/nsp2564G564GggAggG44R.10.00036
ORF1ab/nsp2564G564GggAggG33AY.840.001312
ORF1ab/nsp2564G564GggAggG23AY.90.000135
ORF1ab/nsp2564G564GggAggG33AY.920.000862
ORF1ab/nsp2564G564GggAggG33B.1.1890.012876
ORF1ab/nsp2564G564GggAggG22AD.20.000438
ORF1ab/nsp2564G564GggAggG22AY.420.00008
ORF1ab/nsp2564G564GggAggG22AY.930.000546
ORF1ab/nsp2564G564GggAggG22B.1.177.600.000437
ORF1ab/nsp2564G564GggAggG22B.1.36.180.00084
ORF1ab/nsp2564G564GggAggG22B.1.36.290.001035
ORF1ab/nsp2564G564GggAggG11AM.40.003571
ORF1ab/nsp2564G564GggAggG11AY.16.10.00047
ORF1ab/nsp2564G564GggAggG11AY.230.00007
ORF1ab/nsp2564G564GggAggG11AY.360.000148
ORF1ab/nsp2564G564GggAggG11AY.4.30.000842
ORF1ab/nsp2564G564GggAggG11AY.450.000122
ORF1ab/nsp2564G564GggAggG11AY.46.60.000072
ORF1ab/nsp2564G564GggAggG11AY.50.000021
ORF1ab/nsp2564G564GggAggG11AY.540.000095
ORF1ab/nsp2564G564GggAggG11AY.550.000917
ORF1ab/nsp2564G564GggAggG11AY.680.000274
ORF1ab/nsp2564G564GggAggG11AY.750.000056
ORF1ab/nsp2564G564GggAggG11AY.780.001541
ORF1ab/nsp2564G564GggAggG11AY.910.00073
ORF1ab/nsp2564G564GggAggG11AY.98.10.000048
ORF1ab/nsp2564G564GggAggG11B.1.1.3020.002075
ORF1ab/nsp2564G564GggAggG11B.1.160.300.002976
ORF1ab/nsp2564G564GggAggG11B.1.1630.02439
ORF1ab/nsp2564G564GggAggG11B.1.177.190.001431
ORF1ab/nsp2564G564GggAggG11B.1.177.730.000566
ORF1ab/nsp2564G564GggAggG11B.1.177.830.001481
ORF1ab/nsp2564G564GggAggG11B.1.2410.000812
ORF1ab/nsp2564G564GggAggG11B.1.2430.00007
ORF1ab/nsp2564G564GggAggG11B.1.2580.000067
ORF1ab/nsp2564G564GggAggG11B.1.3110.000275
ORF1ab/nsp2564G564GggAggG11B.1.3510.00003
ORF1ab/nsp2564G564GggAggG11B.1.4220.000812
ORF1ab/nsp2564G564GggAggG11B.1.4990.00105
ORF1ab/nsp2564G564GggAggG11B.1.5450.014493
ORF1ab/nsp2564G564GggAggG11B.1.6280.000352
ORF1ab/nsp2564G564GggAggG11P.1.140.000048
ORF1ab/nsp2564G564GggAggG11P.1.150.000232
ORF1ab/nsp2564G564GggAggG11P.1.20.001156

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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