CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 559

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2559I559VI739VnonsynAttGtt3029302912480-2482
ORF1ab/nsp2559I559II739IsynatTatC4534340.9580572480-2482
ORF1ab/nsp2559I559II739IsynatTatA453190.04194262480-2482
ORF1ab/nsp2559I559delI739deldelATT---919112480-2482
ORF1ab/nsp2559I559LI739LnonsynAttCtt63570.9047622480-2482
ORF1ab/nsp2559I559LI739LnonsynAtTTtA6330.0476192480-2482
ORF1ab/nsp2559I559LI739LnonsynAtTCtG6310.0158732480-2482
ORF1ab/nsp2559I559LI739LnonsynAtTCtA6310.0158732480-2482
ORF1ab/nsp2559I559LI739LnonsynAtTTtG6310.0158732480-2482
ORF1ab/nsp2559I559TI739TnonsynaTtaCt19180.9473682480-2482
ORF1ab/nsp2559I559TI739TnonsynaTTaCC1910.05263162480-2482
ORF1ab/nsp2559I559FI739FnonsynAttTtt151512480-2482
ORF1ab/nsp2559I559MI739MnonsynatTatG121212480-2482
ORF1ab/nsp2559I559SI739SnonsynaTtaGt12110.9166672480-2482
ORF1ab/nsp2559I559SI739SnonsynaTTaGC1210.08333332480-2482
ORF1ab/nsp2559I559NI739NnonsynaTtaAt540.82480-2482
ORF1ab/nsp2559I559NI739NnonsynaTTaAC510.22480-2482
ORF1ab/nsp2559I559YI739YnonsynATtTAt3312480-2482
ORF1ab/nsp2559I559del1I739del1delATtG-t210.52480-2482
ORF1ab/nsp2559I559del1I739del1delatTat-210.52480-2482
ORF1ab/nsp2559I559GI739GnonsynATtGGt1112480-2482
ORF1ab/nsp2559I559AI739AnonsynATtGCt1112480-2482
ORF1ab/nsp2559I559RI739RnonsynATTCGG1112480-2482

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2559I559VAttGtt30293029All0.000579
ORF1ab/nsp2559I559VAttGtt27012701B.400.983971
ORF1ab/nsp2559I559IatTatC434453All0.000083
ORF1ab/nsp2559I559IatTatA19453All0.000004
ORF1ab/nsp2559I559IatTatC96102B.1.1.70.000086
ORF1ab/nsp2559I559IatTatA6102B.1.1.70.000005
ORF1ab/nsp2559I559IatTatC9595B.1.4290.002235
ORF1ab/nsp2559I559delATT---9191All0.000017
ORF1ab/nsp2559I559LAttCtt5763All0.000011
ORF1ab/nsp2559I559LAtTTtA363All0.000001
ORF1ab/nsp2559I559LAtTCtA163All0
ORF1ab/nsp2559I559LAtTCtG163All0
ORF1ab/nsp2559I559LAtTTtG163All0
ORF1ab/nsp2559I559VAttGtt6161B.600.968254
ORF1ab/nsp2559I559IatTatC5050AY.740.005782
ORF1ab/nsp2559I559IatTatC3636B.1.20.000317
ORF1ab/nsp2559I559VAttGtt2828B0.003579
ORF1ab/nsp2559I559VAttGtt2525B.1.1.70.000022
ORF1ab/nsp2559I559delATT---2121B.1.1.70.000019
ORF1ab/nsp2559I559TaTtaCt1819All0.000003
ORF1ab/nsp2559I559TaTTaCC119All0
ORF1ab/nsp2559I559VAttGtt1919AY.40.00003
ORF1ab/nsp2559I559IatTatC1519B.10.000137
ORF1ab/nsp2559I559IatTatA419B.10.000037
ORF1ab/nsp2559I559VAttGtt1919B.1.617.20.000072
ORF1ab/nsp2559I559IatTatC1818AY.460.001873
ORF1ab/nsp2559I559VAttGtt1717B.10.000156
ORF1ab/nsp2559I559LAttCtt1717B.1.20.00015
ORF1ab/nsp2559I559FAttTtt1515All0.000003
ORF1ab/nsp2559I559VAttGtt1515AY.9.20.000551
ORF1ab/nsp2559I559VAttGtt1414AY.250.000084
ORF1ab/nsp2559I559MatTatG1212All0.000002
ORF1ab/nsp2559I559SaTtaGt1112All0.000002
ORF1ab/nsp2559I559SaTTaGC112All0
ORF1ab/nsp2559I559VAttGtt1111AY.1020.000292
ORF1ab/nsp2559I559IatTatC1111B.1.617.20.000041
ORF1ab/nsp2559I559IatTatC1010AY.440.000061
ORF1ab/nsp2559I559VAttGtt1010B.1.10.000181
ORF1ab/nsp2559I559VAttGtt1010B.1.1.3060.004384
ORF1ab/nsp2559I559IatTatC1010B.1.5250.001132
ORF1ab/nsp2559I559LAttCtt99AY.40.000014
ORF1ab/nsp2559I559IatTatC99AY.40.000014
ORF1ab/nsp2559I559FAttTtt88AY.1030.00005
ORF1ab/nsp2559I559IatTatC88AY.470.000249
ORF1ab/nsp2559I559VAttGtt77B.1.1.5190.000278
ORF1ab/nsp2559I559IatTatC66AY.540.000572
ORF1ab/nsp2559I559VAttGtt66B.1.6210.000531
ORF1ab/nsp2559I559IatTatC66P.10.000095
ORF1ab/nsp2559I559NaTtaAt45All0.000001
ORF1ab/nsp2559I559NaTTaAC15All0
ORF1ab/nsp2559I559delATT---55AY.40.000008
ORF1ab/nsp2559I559IatTatA35AY.430.000013
ORF1ab/nsp2559I559IatTatC25AY.430.000009
ORF1ab/nsp2559I559VAttGtt55AY.570.003281
ORF1ab/nsp2559I559delATT---55B.10.000046
ORF1ab/nsp2559I559LAtTTtA15B.1.10.000018
ORF1ab/nsp2559I559LAtTCtG15B.1.10.000018
ORF1ab/nsp2559I559LAtTCtA15B.1.10.000018
ORF1ab/nsp2559I559LAttCtt15B.1.10.000018
ORF1ab/nsp2559I559LAtTTtG15B.1.10.000018
ORF1ab/nsp2559I559LAttCtt55B.1.1.5190.000199
ORF1ab/nsp2559I559LAttCtt55B.1.1.70.000004
ORF1ab/nsp2559I559IatTatC55B.1.360.00073
ORF1ab/nsp2559I559delATT---55B.1.617.20.000019
ORF1ab/nsp2559I559delATT---440.222222
ORF1ab/nsp2559I559VAttGtt44AY.390.000099
ORF1ab/nsp2559I559IatTatC44AY.99.20.000369
ORF1ab/nsp2559I559LAttCtt44B.10.000037
ORF1ab/nsp2559I559delATT---44B.1.1770.000053
ORF1ab/nsp2559I559IatTatC34B.1.3510.000089
ORF1ab/nsp2559I559IatTatA14B.1.3510.00003
ORF1ab/nsp2559I559VAttGtt44B.1.5260.000094
ORF1ab/nsp2559I559YATtTAt33All0.000001
ORF1ab/nsp2559I559IatTatC33AY.1170.000254
ORF1ab/nsp2559I559VAttGtt33AY.1210.000406
ORF1ab/nsp2559I559VAttGtt33AY.430.000013
ORF1ab/nsp2559I559IatTatC33AY.60.000123
ORF1ab/nsp2559I559IatTatA23B.1.10.000036
ORF1ab/nsp2559I559IatTatC13B.1.10.000018
ORF1ab/nsp2559I559IatTatC33B.1.1.2140.000166
ORF1ab/nsp2559I559IatTatC33B.1.1.2190.015
ORF1ab/nsp2559I559delATT---33B.1.1.330.001263
ORF1ab/nsp2559I559MatTatG33B.1.1.70.000003
ORF1ab/nsp2559I559IatTatC33B.1.2230.008333
ORF1ab/nsp2559I559IatTatC33B.1.2580.0002
ORF1ab/nsp2559I559VAttGtt33B.1.4270.000151
ORF1ab/nsp2559I559VAttGtt33P.20.00056
ORF1ab/nsp2559I559IatTatA220.111111
ORF1ab/nsp2559I559SaTtaGt220.111111
ORF1ab/nsp2559I559TaTtaCt220.111111
ORF1ab/nsp2559I559del1atTat-12All0
ORF1ab/nsp2559I559del1ATtG-t12All0
ORF1ab/nsp2559I559IatTatC22AY.1000.000092
ORF1ab/nsp2559I559MatTatG22AY.1030.000012
ORF1ab/nsp2559I559IatTatC22AY.1030.000012
ORF1ab/nsp2559I559VAttGtt22AY.1030.000012
ORF1ab/nsp2559I559VAttGtt22AY.1130.000285
ORF1ab/nsp2559I559delATT---22AY.250.000012
ORF1ab/nsp2559I559VAttGtt22AY.290.000032
ORF1ab/nsp2559I559VAttGtt22AY.330.000134
ORF1ab/nsp2559I559VAttGtt22AY.4.50.000215
ORF1ab/nsp2559I559TaTtaCt22AY.430.000009
ORF1ab/nsp2559I559VAttGtt22AY.440.000012
ORF1ab/nsp2559I559delATT---22AY.50.000041
ORF1ab/nsp2559I559TaTtaCt22AY.50.000041
ORF1ab/nsp2559I559LAttCtt12AY.98.10.000048
ORF1ab/nsp2559I559LAtTTtA12AY.98.10.000048
ORF1ab/nsp2559I559YATtTAt22B.10.000018
ORF1ab/nsp2559I559delATT---22B.1.10.000036
ORF1ab/nsp2559I559SaTtaGt22B.1.10.000036
ORF1ab/nsp2559I559LAttCtt22B.1.1.2840.000215
ORF1ab/nsp2559I559delATT---22B.1.1.3480.001592
ORF1ab/nsp2559I559SaTtaGt22B.1.1.70.000002
ORF1ab/nsp2559I559LAttCtt22B.1.1770.000026
ORF1ab/nsp2559I559TaTtaCt22B.1.177.160.001329
ORF1ab/nsp2559I559VAttGtt22B.1.20.000018
ORF1ab/nsp2559I559IatTatC22B.1.258.180.2
ORF1ab/nsp2559I559VAttGtt22B.1.3960.001411
ORF1ab/nsp2559I559delATT---22B.1.4240.016129
ORF1ab/nsp2559I559VAttGtt22B.1.4280.002041
ORF1ab/nsp2559I559delATT---22B.1.4290.000047
ORF1ab/nsp2559I559VAttGtt22B.1.5250.000226
ORF1ab/nsp2559I559VAttGtt22B.30.001661
ORF1ab/nsp2559I559VAttGtt22B.40.004415
ORF1ab/nsp2559I559delATT---22N.60.014184
ORF1ab/nsp2559I559SaTtaGt11A.60.005128
ORF1ab/nsp2559I559VAttGtt11A.60.005128
ORF1ab/nsp2559I559GATtGGt11A.60.005128
ORF1ab/nsp2559I559IatTatC11AE.80.000489
ORF1ab/nsp2559I559RATTCGG11All0
ORF1ab/nsp2559I559GATtGGt11All0
ORF1ab/nsp2559I559AATtGCt11All0
ORF1ab/nsp2559I559TaTtaCt11AY.100.00053
ORF1ab/nsp2559I559MatTatG11AY.1000.000046
ORF1ab/nsp2559I559VAttGtt11AY.1000.000046
ORF1ab/nsp2559I559LAttCtt11AY.1000.000046
ORF1ab/nsp2559I559IatTatC11AY.1020.000027
ORF1ab/nsp2559I559LAtTTtA11AY.1030.000006
ORF1ab/nsp2559I559TaTTaCC11AY.1030.000006
ORF1ab/nsp2559I559VAttGtt11AY.1060.000335
ORF1ab/nsp2559I559delATT---11AY.1080.001103
ORF1ab/nsp2559I559delATT---11AY.1130.000142
ORF1ab/nsp2559I559TaTtaCt11AY.1160.000287
ORF1ab/nsp2559I559VAttGtt11AY.1160.000287
ORF1ab/nsp2559I559IatTatC11AY.1190.000035
ORF1ab/nsp2559I559NaTtaAt11AY.1200.000037
ORF1ab/nsp2559I559TaTtaCt11AY.1200.000037
ORF1ab/nsp2559I559IatTatC11AY.1200.000037
ORF1ab/nsp2559I559delATT---11AY.190.00114
ORF1ab/nsp2559I559AATtGCt11AY.200.000039
ORF1ab/nsp2559I559IatTatC11AY.200.000039
ORF1ab/nsp2559I559VAttGtt11AY.200.000039
ORF1ab/nsp2559I559LAttCtt11AY.230.00007
ORF1ab/nsp2559I559NaTtaAt11AY.250.000006
ORF1ab/nsp2559I559VAttGtt11AY.270.000065
ORF1ab/nsp2559I559LAttCtt11AY.270.000065
ORF1ab/nsp2559I559IatTatC11AY.290.000016
ORF1ab/nsp2559I559VAttGtt11AY.30.00001
ORF1ab/nsp2559I559delATT---11AY.30.00001
ORF1ab/nsp2559I559VAttGtt11AY.3.10.000085
ORF1ab/nsp2559I559MatTatG11AY.3.10.000085
ORF1ab/nsp2559I559VAttGtt11AY.340.000097
ORF1ab/nsp2559I559SaTtaGt11AY.34.10.00051
ORF1ab/nsp2559I559SaTtaGt11AY.390.000025
ORF1ab/nsp2559I559SaTtaGt11AY.40.000002
ORF1ab/nsp2559I559VAttGtt11AY.4.20.000022
ORF1ab/nsp2559I559VAttGtt11AY.4.2.10.000149
ORF1ab/nsp2559I559delATT---11AY.420.00004
ORF1ab/nsp2559I559delATT---11AY.430.000004
ORF1ab/nsp2559I559LAttCtt11AY.430.000004
ORF1ab/nsp2559I559delATT---11AY.440.000006
ORF1ab/nsp2559I559del1ATtG-t11AY.440.000006
ORF1ab/nsp2559I559LAttCtt11AY.440.000006
ORF1ab/nsp2559I559delATT---11AY.460.000104
ORF1ab/nsp2559I559delATT---11AY.46.60.000072
ORF1ab/nsp2559I559VAttGtt11AY.470.000031
ORF1ab/nsp2559I559MatTatG11AY.50.000021
ORF1ab/nsp2559I559LAttCtt11AY.5.40.000277
ORF1ab/nsp2559I559IatTatC11AY.520.000814
ORF1ab/nsp2559I559delATT---11AY.60.000041
ORF1ab/nsp2559I559FAttTtt11AY.70.000196
ORF1ab/nsp2559I559VAttGtt11AY.7.10.000113
ORF1ab/nsp2559I559VAttGtt11AY.740.000116
ORF1ab/nsp2559I559VAttGtt11AY.750.000056
ORF1ab/nsp2559I559LAttCtt11AY.780.001541
ORF1ab/nsp2559I559delATT---11AY.840.000437
ORF1ab/nsp2559I559IatTatC11AY.90.000068
ORF1ab/nsp2559I559IatTatC11AY.9.10.000084
ORF1ab/nsp2559I559delATT---11AY.9.20.000037
ORF1ab/nsp2559I559FAttTtt11AY.910.00073
ORF1ab/nsp2559I559VAttGtt11AY.920.000287
ORF1ab/nsp2559I559VAttGtt11AY.950.000761
ORF1ab/nsp2559I559VAttGtt11AY.960.002075
ORF1ab/nsp2559I559delATT---11AY.990.001049
ORF1ab/nsp2559I559TaTtaCt11AY.99.20.000092
ORF1ab/nsp2559I559VAttGtt11AY.99.20.000092
ORF1ab/nsp2559I559MatTatG11B.10.000009
ORF1ab/nsp2559I559del1atTat-11B.10.000009
ORF1ab/nsp2559I559TaTtaCt11B.10.000009
ORF1ab/nsp2559I559FAttTtt11B.1.10.000018
ORF1ab/nsp2559I559MatTatG11B.1.10.000018
ORF1ab/nsp2559I559VAttGtt11B.1.1.280.000311
ORF1ab/nsp2559I559VAttGtt11B.1.1.330.000421
ORF1ab/nsp2559I559VAttGtt11B.1.1.3690.000446
ORF1ab/nsp2559I559delATT---11B.1.1.4160.000905
ORF1ab/nsp2559I559VAttGtt11B.1.1.440.00241
ORF1ab/nsp2559I559delATT---11B.1.1.4480.002033
ORF1ab/nsp2559I559FAttTtt11B.1.1.70.000001
ORF1ab/nsp2559I559RATTCGG11B.1.1.70.000001
ORF1ab/nsp2559I559TaTtaCt11B.1.1.70.000001
ORF1ab/nsp2559I559IatTatC11B.1.1600.000031
ORF1ab/nsp2559I559SaTtaGt11B.1.1600.000031
ORF1ab/nsp2559I559YATtTAt11B.1.1670.007812
ORF1ab/nsp2559I559NaTtaAt11B.1.1770.000013
ORF1ab/nsp2559I559VAttGtt11B.1.1770.000013
ORF1ab/nsp2559I559IatTatC11B.1.177.200.001517
ORF1ab/nsp2559I559delATT---11B.1.177.430.001477
ORF1ab/nsp2559I559delATT---11B.1.177.540.000606
ORF1ab/nsp2559I559VAttGtt11B.1.177.570.000281
ORF1ab/nsp2559I559delATT---11B.1.177.570.000281
ORF1ab/nsp2559I559FAttTtt11B.1.177.70.000165
ORF1ab/nsp2559I559delATT---11B.1.177.830.001481
ORF1ab/nsp2559I559delATT---11B.1.1790.003759
ORF1ab/nsp2559I559IatTatC11B.1.1950.005025
ORF1ab/nsp2559I559VAttGtt11B.1.220.001318
ORF1ab/nsp2559I559delATT---11B.1.2210.000071
ORF1ab/nsp2559I559TaTtaCt11B.1.2210.000071
ORF1ab/nsp2559I559VAttGtt11B.1.2340.000132
ORF1ab/nsp2559I559IatTatC11B.1.2340.000132
ORF1ab/nsp2559I559LAttCtt11B.1.2340.000132
ORF1ab/nsp2559I559delATT---11B.1.258.30.001675
ORF1ab/nsp2559I559IatTatC11B.1.2600.003344
ORF1ab/nsp2559I559FAttTtt11B.1.3110.000275
ORF1ab/nsp2559I559FAttTtt11B.1.36.100.004785
ORF1ab/nsp2559I559VAttGtt11B.1.36.160.001425
ORF1ab/nsp2559I559delATT---11B.1.36.180.00042
ORF1ab/nsp2559I559IatTatC11B.1.36.290.000517
ORF1ab/nsp2559I559IatTatC11B.1.36.80.001
ORF1ab/nsp2559I559TaTtaCt11B.1.3670.000792
ORF1ab/nsp2559I559VAttGtt11B.1.4090.000781
ORF1ab/nsp2559I559IatTatC11B.1.4270.00005
ORF1ab/nsp2559I559LAttCtt11B.1.4270.00005
ORF1ab/nsp2559I559MatTatG11B.1.4290.000024
ORF1ab/nsp2559I559SaTTaGC11B.1.4970.000315
ORF1ab/nsp2559I559IatTatC11B.1.5260.000024
ORF1ab/nsp2559I559VAttGtt11B.1.5380.008065
ORF1ab/nsp2559I559delATT---11B.1.5610.000397
ORF1ab/nsp2559I559TaTtaCt11B.1.564.10.001577
ORF1ab/nsp2559I559VAttGtt11B.1.5750.000303
ORF1ab/nsp2559I559VAttGtt11B.1.5960.000087
ORF1ab/nsp2559I559IatTatC11B.1.5960.000087
ORF1ab/nsp2559I559VAttGtt11B.1.6090.000479
ORF1ab/nsp2559I559IatTatC11B.1.6090.000479
ORF1ab/nsp2559I559LAttCtt11B.1.617.10.000129
ORF1ab/nsp2559I559IatTatC11B.1.617.10.000129
ORF1ab/nsp2559I559TaTtaCt11B.1.617.20.000004
ORF1ab/nsp2559I559MatTatG11B.1.617.20.000004
ORF1ab/nsp2559I559NaTtaAt11B.1.617.20.000004
ORF1ab/nsp2559I559delATT---11B.1.617.30.002985
ORF1ab/nsp2559I559delATT---11B.1.6210.000089
ORF1ab/nsp2559I559IatTatC11B.1.6230.000536
ORF1ab/nsp2559I559IatTatA11B.1.6280.000352
ORF1ab/nsp2559I559VAttGtt11B.1.6370.000073
ORF1ab/nsp2559I559IatTatC11B.1.940.027027
ORF1ab/nsp2559I559delATT---11B.340.013699
ORF1ab/nsp2559I559delATT---11B.570.015152
ORF1ab/nsp2559I559IatTatC11N.50.001767
ORF1ab/nsp2559I559VAttGtt11P.10.000016
ORF1ab/nsp2559I559delATT---11P.10.000016
ORF1ab/nsp2559I559NaTTaAC11P.10.000016
ORF1ab/nsp2559I559LAttCtt11P.1.100.000269
ORF1ab/nsp2559I559VAttGtt11P.1.170.000162
ORF1ab/nsp2559I559delATT---11P.20.000187
ORF1ab/nsp2559I559VAttGtt11Q.80.000165
ORF1ab/nsp2559I559IatTatC11Q.80.000165