CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 557 | K557R | K737R | nonsyn | aAa | aGa | 349 | 346 | 0.991404 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557R | K737R | nonsyn | aAA | aGG | 349 | 2 | 0.00573066 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557R | K737R | nonsyn | AAa | CGa | 349 | 1 | 0.00286533 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557K | K737K | syn | aaA | aaG | 155 | 155 | 1 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557Q | K737Q | nonsyn | Aaa | Caa | 141 | 141 | 1 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557del | K737del | del | AAA | --- | 92 | 92 | 1 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557E | K737E | nonsyn | Aaa | Gaa | 84 | 82 | 0.97619 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557E | K737E | nonsyn | AaA | GaG | 84 | 2 | 0.0238095 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557N | K737N | nonsyn | aaA | aaT | 35 | 18 | 0.514286 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557N | K737N | nonsyn | aaA | aaC | 35 | 17 | 0.485714 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557T | K737T | nonsyn | aAa | aCa | 30 | 27 | 0.9 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557T | K737T | nonsyn | aAA | aCT | 30 | 2 | 0.0666667 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557T | K737T | nonsyn | aAA | aCC | 30 | 1 | 0.0333333 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557I | K737I | nonsyn | aAa | aTa | 19 | 19 | 1 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557X | K737X | nonsyn | Aaa | Taa | 5 | 4 | 0.8 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557X | K737X | nonsyn | AAa | TGa | 5 | 1 | 0.2 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557del1 | K737del1 | del | Aaa | -aa | 3 | 3 | 1 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557S | K737S | nonsyn | aAA | aGT | 3 | 2 | 0.666667 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557L | K737L | nonsyn | AAa | TTa | 3 | 2 | 0.666667 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557S | K737S | nonsyn | AAa | TCa | 3 | 1 | 0.333333 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557L | K737L | nonsyn | AAa | CTa | 3 | 1 | 0.333333 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557del2 | K737del2 | del | aAA | a-- | 2 | 2 | 1 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557G | K737G | nonsyn | AAA | GGG | 2 | 1 | 0.5 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557G | K737G | nonsyn | AAa | GGa | 2 | 1 | 0.5 | 2474-2476 |
ORF1ab/nsp2 | 557 | K557P | K737P | nonsyn | AAa | CCa | 1 | 1 | 1 | 2474-2476 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 346 | 349 | All | 0.000066 |
ORF1ab/nsp2 | 557 | K557R | aAA | aGG | 2 | 349 | All | 0 |
ORF1ab/nsp2 | 557 | K557R | AAa | CGa | 1 | 349 | All | 0 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 228 | 228 | N.4 | 0.970213 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 155 | 155 | All | 0.00003 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 141 | 141 | All | 0.000027 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 92 | 92 | All | 0.000018 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 82 | 84 | All | 0.000016 |
ORF1ab/nsp2 | 557 | K557E | AaA | GaG | 2 | 84 | All | 0 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 84 | 84 | B.1.617.2 | 0.000316 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 44 | 44 | AY.5 | 0.000909 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 39 | 39 | AY.98 | 0.003081 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 36 | 37 | B.1 | 0.00033 |
ORF1ab/nsp2 | 557 | K557R | aAA | aGG | 1 | 37 | B.1 | 0.000009 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 18 | 35 | All | 0.000003 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaC | 17 | 35 | All | 0.000003 |
ORF1ab/nsp2 | 557 | K557T | aAa | aCa | 27 | 30 | All | 0.000005 |
ORF1ab/nsp2 | 557 | K557T | aAA | aCT | 2 | 30 | All | 0 |
ORF1ab/nsp2 | 557 | K557T | aAA | aCC | 1 | 30 | All | 0 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 28 | 28 | AY.70 | 0.005838 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 25 | 25 | B.1.1.355 | 0.384615 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp2 | 557 | K557I | aAa | aTa | 19 | 19 | All | 0.000004 |
ORF1ab/nsp2 | 557 | K557T | aAa | aCa | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 12 | 12 | B.1.531 | 1 |
ORF1ab/nsp2 | 557 | K557I | aAa | aTa | 11 | 11 | AY.7.1 | 0.00124 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 5 | 10 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaC | 5 | 10 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 5 | 6 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 557 | K557E | AaA | GaG | 1 | 6 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 5 | 6 | B.1.1 | 0.000091 |
ORF1ab/nsp2 | 557 | K557R | AAa | CGa | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp2 | 557 | K557X | Aaa | Taa | 4 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 557 | K557X | AAa | TGa | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 4 | 5 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 557 | K557R | aAA | aGG | 1 | 5 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 5 | 5 | B.1.36.36 | 0.00301 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaC | 3 | 5 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 2 | 5 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp2 | 557 | K557T | aAa | aCa | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 557 | K557T | aAA | aCT | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 557 | K557del1 | Aaa | -aa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 557 | K557S | aAA | aGT | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 557 | K557L | AAa | TTa | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 557 | K557S | AAa | TCa | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 557 | K557L | AAa | CTa | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaC | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 557 | K557L | AAa | TTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 557 | K557S | aAA | aGT | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 557 | K557del2 | aAA | a-- | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 557 | K557G | AAa | GGa | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 557 | K557G | AAA | GGG | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 557 | K557T | aAa | aCa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 557 | K557G | AAa | GGa | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 557 | K557G | AAA | GGG | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 557 | K557T | aAA | aCC | 1 | 2 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 557 | K557T | aAa | aCa | 1 | 2 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 557 | K557X | AAa | TGa | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 557 | K557X | Aaa | Taa | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaC | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 557 | K557E | AaA | GaG | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 557 | K557del1 | Aaa | -aa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaC | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp2 | 557 | K557I | aAa | aTa | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp2 | 557 | K557P | AAa | CCa | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 557 | K557T | aAa | aCa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 557 | K557T | aAa | aCa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 557 | K557I | aAa | aTa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 557 | K557del2 | aAA | a-- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 557 | K557I | aAa | aTa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 557 | K557I | aAa | aTa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 557 | K557S | AAa | TCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 557 | K557P | AAa | CCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 557 | K557T | aAa | aCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 557 | K557del1 | Aaa | -aa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 557 | K557T | aAa | aCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 557 | K557X | Aaa | Taa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 557 | K557L | AAa | CTa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | B.1.177.26 | 0.006993 |
ORF1ab/nsp2 | 557 | K557del2 | aAA | a-- | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 557 | K557X | Aaa | Taa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 557 | K557X | Aaa | Taa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 557 | K557I | aAa | aTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 557 | K557I | aAa | aTa | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 557 | K557Q | Aaa | Caa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 557 | K557I | aAa | aTa | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp2 | 557 | K557I | aAa | aTa | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 557 | K557K | aaA | aaG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 557 | K557R | aAa | aGa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 557 | K557del | AAA | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 557 | K557E | Aaa | Gaa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 557 | K557N | aaA | aaT | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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