CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 557

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2557K557RK737RnonsynaAaaGa3493460.9914042474-2476
ORF1ab/nsp2557K557RK737RnonsynaAAaGG34920.005730662474-2476
ORF1ab/nsp2557K557RK737RnonsynAAaCGa34910.002865332474-2476
ORF1ab/nsp2557K557KK737KsynaaAaaG15515512474-2476
ORF1ab/nsp2557K557QK737QnonsynAaaCaa14114112474-2476
ORF1ab/nsp2557K557delK737deldelAAA---929212474-2476
ORF1ab/nsp2557K557EK737EnonsynAaaGaa84820.976192474-2476
ORF1ab/nsp2557K557EK737EnonsynAaAGaG8420.02380952474-2476
ORF1ab/nsp2557K557NK737NnonsynaaAaaT35180.5142862474-2476
ORF1ab/nsp2557K557NK737NnonsynaaAaaC35170.4857142474-2476
ORF1ab/nsp2557K557TK737TnonsynaAaaCa30270.92474-2476
ORF1ab/nsp2557K557TK737TnonsynaAAaCT3020.06666672474-2476
ORF1ab/nsp2557K557TK737TnonsynaAAaCC3010.03333332474-2476
ORF1ab/nsp2557K557IK737InonsynaAaaTa191912474-2476
ORF1ab/nsp2557K557XK737XnonsynAaaTaa540.82474-2476
ORF1ab/nsp2557K557XK737XnonsynAAaTGa510.22474-2476
ORF1ab/nsp2557K557del1K737del1delAaa-aa3312474-2476
ORF1ab/nsp2557K557SK737SnonsynaAAaGT320.6666672474-2476
ORF1ab/nsp2557K557LK737LnonsynAAaTTa320.6666672474-2476
ORF1ab/nsp2557K557SK737SnonsynAAaTCa310.3333332474-2476
ORF1ab/nsp2557K557LK737LnonsynAAaCTa310.3333332474-2476
ORF1ab/nsp2557K557del2K737del2delaAAa--2212474-2476
ORF1ab/nsp2557K557GK737GnonsynAAAGGG210.52474-2476
ORF1ab/nsp2557K557GK737GnonsynAAaGGa210.52474-2476
ORF1ab/nsp2557K557PK737PnonsynAAaCCa1112474-2476

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2557K557RaAaaGa346349All0.000066
ORF1ab/nsp2557K557RaAAaGG2349All0
ORF1ab/nsp2557K557RAAaCGa1349All0
ORF1ab/nsp2557K557RaAaaGa228228N.40.970213
ORF1ab/nsp2557K557KaaAaaG155155All0.00003
ORF1ab/nsp2557K557QAaaCaa141141All0.000027
ORF1ab/nsp2557K557delAAA---9292All0.000018
ORF1ab/nsp2557K557EAaaGaa8284All0.000016
ORF1ab/nsp2557K557EAaAGaG284All0
ORF1ab/nsp2557K557QAaaCaa8484B.1.617.20.000316
ORF1ab/nsp2557K557EAaaGaa4444AY.50.000909
ORF1ab/nsp2557K557QAaaCaa3939AY.980.003081
ORF1ab/nsp2557K557RaAaaGa3637B.10.00033
ORF1ab/nsp2557K557RaAAaGG137B.10.000009
ORF1ab/nsp2557K557NaaAaaT1835All0.000003
ORF1ab/nsp2557K557NaaAaaC1735All0.000003
ORF1ab/nsp2557K557TaAaaCa2730All0.000005
ORF1ab/nsp2557K557TaAAaCT230All0
ORF1ab/nsp2557K557TaAAaCC130All0
ORF1ab/nsp2557K557KaaAaaG2828AY.700.005838
ORF1ab/nsp2557K557RaAaaGa2626B.1.1.70.000023
ORF1ab/nsp2557K557KaaAaaG2525B.1.1.3550.384615
ORF1ab/nsp2557K557delAAA---2121B.1.1.70.000019
ORF1ab/nsp2557K557IaAaaTa1919All0.000004
ORF1ab/nsp2557K557TaAaaCa1818B.1.617.20.000068
ORF1ab/nsp2557K557KaaAaaG1515AY.40.000023
ORF1ab/nsp2557K557KaaAaaG1212B.1.1.70.000011
ORF1ab/nsp2557K557KaaAaaG1212B.1.5311
ORF1ab/nsp2557K557IaAaaTa1111AY.7.10.00124
ORF1ab/nsp2557K557EAaaGaa1111B.1.1.70.00001
ORF1ab/nsp2557K557NaaAaaT510AY.40.000008
ORF1ab/nsp2557K557NaaAaaC510AY.40.000008
ORF1ab/nsp2557K557RaAaaGa88AY.250.000048
ORF1ab/nsp2557K557RaAaaGa77AY.90.000473
ORF1ab/nsp2557K557delAAA---77B.10.000064
ORF1ab/nsp2557K557KaaAaaG66AY.1030.000037
ORF1ab/nsp2557K557EAaaGaa56AY.40.000008
ORF1ab/nsp2557K557EAaAGaG16AY.40.000002
ORF1ab/nsp2557K557KaaAaaG66AY.98.10.000291
ORF1ab/nsp2557K557RaAaaGa56B.1.10.000091
ORF1ab/nsp2557K557RAAaCGa16B.1.10.000018
ORF1ab/nsp2557K557delAAA---66B.1.617.20.000023
ORF1ab/nsp2557K557RaAaaGa66P.10.000095
ORF1ab/nsp2557K557XAaaTaa45All0.000001
ORF1ab/nsp2557K557XAAaTGa15All0
ORF1ab/nsp2557K557delAAA---55AY.40.000008
ORF1ab/nsp2557K557RaAaaGa45AY.40.000006
ORF1ab/nsp2557K557RaAAaGG15AY.40.000002
ORF1ab/nsp2557K557KaaAaaG55B.1.36.360.00301
ORF1ab/nsp2557K557NaaAaaC35B.1.617.20.000011
ORF1ab/nsp2557K557NaaAaaT25B.1.617.20.000008
ORF1ab/nsp2557K557delAAA---440.222222
ORF1ab/nsp2557K557TaAaaCa240.111111
ORF1ab/nsp2557K557TaAAaCT240.111111
ORF1ab/nsp2557K557KaaAaaG44AY.1020.000106
ORF1ab/nsp2557K557KaaAaaG44AY.1160.001147
ORF1ab/nsp2557K557EAaaGaa44B.1.617.20.000015
ORF1ab/nsp2557K557del1Aaa-aa33All0.000001
ORF1ab/nsp2557K557SaAAaGT23All0
ORF1ab/nsp2557K557LAAaTTa23All0
ORF1ab/nsp2557K557SAAaTCa13All0
ORF1ab/nsp2557K557LAAaCTa13All0
ORF1ab/nsp2557K557KaaAaaG33AY.440.000018
ORF1ab/nsp2557K557KaaAaaG33B.10.000027
ORF1ab/nsp2557K557NaaAaaT23B.10.000018
ORF1ab/nsp2557K557NaaAaaC13B.10.000009
ORF1ab/nsp2557K557KaaAaaG33B.1.10.000054
ORF1ab/nsp2557K557delAAA---33B.1.1.330.001263
ORF1ab/nsp2557K557QAaaCaa33B.1.1.70.000003
ORF1ab/nsp2557K557QAaaCaa33B.1.1600.000094
ORF1ab/nsp2557K557delAAA---33B.1.1770.00004
ORF1ab/nsp2557K557KaaAaaG33B.1.177.730.001699
ORF1ab/nsp2557K557RaAaaGa33B.1.5090.002597
ORF1ab/nsp2557K557RaAaaGa220.111111
ORF1ab/nsp2557K557NaaAaaT220.111111
ORF1ab/nsp2557K557LAAaTTa220.111111
ORF1ab/nsp2557K557SaAAaGT220.111111
ORF1ab/nsp2557K557del2aAAa--22All0
ORF1ab/nsp2557K557GAAaGGa12All0
ORF1ab/nsp2557K557GAAAGGG12All0
ORF1ab/nsp2557K557KaaAaaG22AY.1110.000366
ORF1ab/nsp2557K557RaAaaGa22AY.1200.000074
ORF1ab/nsp2557K557delAAA---22AY.250.000012
ORF1ab/nsp2557K557TaAaaCa22AY.40.000003
ORF1ab/nsp2557K557GAAaGGa12AY.40.000002
ORF1ab/nsp2557K557GAAAGGG12AY.40.000002
ORF1ab/nsp2557K557KaaAaaG22AY.430.000009
ORF1ab/nsp2557K557delAAA---22AY.50.000041
ORF1ab/nsp2557K557EAaaGaa22AY.510.001818
ORF1ab/nsp2557K557EAaaGaa22AY.750.000112
ORF1ab/nsp2557K557delAAA---22AY.9.20.000073
ORF1ab/nsp2557K557TaAAaCC12AY.98.10.000048
ORF1ab/nsp2557K557TaAaaCa12AY.98.10.000048
ORF1ab/nsp2557K557QAaaCaa22B.1.10.000036
ORF1ab/nsp2557K557delAAA---22B.1.10.000036
ORF1ab/nsp2557K557XAAaTGa12B.1.10.000018
ORF1ab/nsp2557K557XAaaTaa12B.1.10.000018
ORF1ab/nsp2557K557RaAaaGa22B.1.1.330.000842
ORF1ab/nsp2557K557delAAA---22B.1.1.3480.001592
ORF1ab/nsp2557K557QAaaCaa22B.1.1.5190.000079
ORF1ab/nsp2557K557NaaAaaC22B.1.1.70.000002
ORF1ab/nsp2557K557KaaAaaG22B.1.1770.000026
ORF1ab/nsp2557K557EAaaGaa12B.1.1770.000013
ORF1ab/nsp2557K557EAaAGaG12B.1.1770.000013
ORF1ab/nsp2557K557del1Aaa-aa22B.1.20.000018
ORF1ab/nsp2557K557EAaaGaa22B.1.20.000018
ORF1ab/nsp2557K557KaaAaaG22B.1.2580.000133
ORF1ab/nsp2557K557RaAaaGa22B.1.3460.002621
ORF1ab/nsp2557K557delAAA---22B.1.4240.016129
ORF1ab/nsp2557K557QAaaCaa22B.1.4290.000047
ORF1ab/nsp2557K557delAAA---22B.1.4290.000047
ORF1ab/nsp2557K557RaAaaGa22B.1.617.10.000258
ORF1ab/nsp2557K557KaaAaaG22B.1.617.20.000008
ORF1ab/nsp2557K557delAAA---22N.60.014184
ORF1ab/nsp2557K557KaaAaaG22P.10.000032
ORF1ab/nsp2557K557NaaAaaC12P.10.000016
ORF1ab/nsp2557K557NaaAaaT12P.10.000016
ORF1ab/nsp2557K557IaAaaTa11A.2.20.001689
ORF1ab/nsp2557K557KaaAaaG11A.30.002096
ORF1ab/nsp2557K557KaaAaaG11A.60.005128
ORF1ab/nsp2557K557PAAaCCa11All0
ORF1ab/nsp2557K557TaAaaCa11AY.1020.000027
ORF1ab/nsp2557K557NaaAaaC11AY.1030.000006
ORF1ab/nsp2557K557delAAA---11AY.1080.001103
ORF1ab/nsp2557K557delAAA---11AY.1130.000142
ORF1ab/nsp2557K557KaaAaaG11AY.1140.000231
ORF1ab/nsp2557K557RaAaaGa11AY.1190.000035
ORF1ab/nsp2557K557KaaAaaG11AY.160.00038
ORF1ab/nsp2557K557delAAA---11AY.190.00114
ORF1ab/nsp2557K557TaAaaCa11AY.200.000039
ORF1ab/nsp2557K557IaAaaTa11AY.200.000039
ORF1ab/nsp2557K557KaaAaaG11AY.23.10.000417
ORF1ab/nsp2557K557QAaaCaa11AY.250.000006
ORF1ab/nsp2557K557NaaAaaT11AY.250.000006
ORF1ab/nsp2557K557EAaaGaa11AY.250.000006
ORF1ab/nsp2557K557EAaaGaa11AY.260.000028
ORF1ab/nsp2557K557RaAaaGa11AY.260.000028
ORF1ab/nsp2557K557NaaAaaT11AY.290.000016
ORF1ab/nsp2557K557KaaAaaG11AY.30.00001
ORF1ab/nsp2557K557NaaAaaC11AY.30.00001
ORF1ab/nsp2557K557RaAaaGa11AY.30.00001
ORF1ab/nsp2557K557delAAA---11AY.30.00001
ORF1ab/nsp2557K557RaAaaGa11AY.390.000025
ORF1ab/nsp2557K557QAaaCaa11AY.390.000025
ORF1ab/nsp2557K557QAaaCaa11AY.40.000002
ORF1ab/nsp2557K557delAAA---11AY.420.00004
ORF1ab/nsp2557K557NaaAaaC11AY.430.000004
ORF1ab/nsp2557K557delAAA---11AY.430.000004
ORF1ab/nsp2557K557RaAaaGa11AY.440.000006
ORF1ab/nsp2557K557delAAA---11AY.440.000006
ORF1ab/nsp2557K557EAaaGaa11AY.440.000006
ORF1ab/nsp2557K557delAAA---11AY.46.20.000635
ORF1ab/nsp2557K557delAAA---11AY.46.60.000072
ORF1ab/nsp2557K557QAaaCaa11AY.540.000095
ORF1ab/nsp2557K557del2aAAa--11AY.60.000041
ORF1ab/nsp2557K557RaAaaGa11AY.610.000105
ORF1ab/nsp2557K557IaAaaTa11AY.700.000209
ORF1ab/nsp2557K557KaaAaaG11AY.750.000056
ORF1ab/nsp2557K557KaaAaaG11AY.75.10.00018
ORF1ab/nsp2557K557NaaAaaC11AY.840.000437
ORF1ab/nsp2557K557delAAA---11AY.840.000437
ORF1ab/nsp2557K557NaaAaaC11AY.98.10.000048
ORF1ab/nsp2557K557delAAA---11AY.990.001049
ORF1ab/nsp2557K557delAAA---11B0.000128
ORF1ab/nsp2557K557KaaAaaG11B0.000128
ORF1ab/nsp2557K557IaAaaTa11B.10.000009
ORF1ab/nsp2557K557QAaaCaa11B.10.000009
ORF1ab/nsp2557K557EAaaGaa11B.10.000009
ORF1ab/nsp2557K557EAaaGaa11B.1.10.000018
ORF1ab/nsp2557K557SAAaTCa11B.1.10.000018
ORF1ab/nsp2557K557PAAaCCa11B.1.10.000018
ORF1ab/nsp2557K557TaAaaCa11B.1.10.000018
ORF1ab/nsp2557K557del1Aaa-aa11B.1.10.000018
ORF1ab/nsp2557K557RaAaaGa11B.1.1.2220.000204
ORF1ab/nsp2557K557delAAA---11B.1.1.4160.000905
ORF1ab/nsp2557K557delAAA---11B.1.1.4480.002033
ORF1ab/nsp2557K557TaAaaCa11B.1.1.70.000001
ORF1ab/nsp2557K557XAaaTaa11B.1.1.70.000001
ORF1ab/nsp2557K557LAAaCTa11B.1.1600.000031
ORF1ab/nsp2557K557EAaaGaa11B.1.177.200.001517
ORF1ab/nsp2557K557KaaAaaG11B.1.177.260.006993
ORF1ab/nsp2557K557del2aAAa--11B.1.177.430.001477
ORF1ab/nsp2557K557delAAA---11B.1.177.540.000606
ORF1ab/nsp2557K557delAAA---11B.1.177.570.000281
ORF1ab/nsp2557K557delAAA---11B.1.177.830.001481
ORF1ab/nsp2557K557delAAA---11B.1.1790.003759
ORF1ab/nsp2557K557XAaaTaa11B.1.20.000009
ORF1ab/nsp2557K557RaAaaGa11B.1.20.000009
ORF1ab/nsp2557K557XAaaTaa11B.1.2430.00007
ORF1ab/nsp2557K557delAAA---11B.1.258.30.001675
ORF1ab/nsp2557K557KaaAaaG11B.1.2650.001271
ORF1ab/nsp2557K557NaaAaaT11B.1.3510.00003
ORF1ab/nsp2557K557RaAaaGa11B.1.360.000146
ORF1ab/nsp2557K557EAaaGaa11B.1.360.000146
ORF1ab/nsp2557K557delAAA---11B.1.36.180.00042
ORF1ab/nsp2557K557IaAaaTa11B.1.36.290.000517
ORF1ab/nsp2557K557IaAaaTa11B.1.36.390.002217
ORF1ab/nsp2557K557RaAaaGa11B.1.3610.001289
ORF1ab/nsp2557K557EAaaGaa11B.1.3620.001541
ORF1ab/nsp2557K557RaAaaGa11B.1.3690.000285
ORF1ab/nsp2557K557QAaaCaa11B.1.4270.00005
ORF1ab/nsp2557K557KaaAaaG11B.1.5260.000024
ORF1ab/nsp2557K557delAAA---11B.1.5610.000397
ORF1ab/nsp2557K557RaAaaGa11B.1.617.20.000004
ORF1ab/nsp2557K557delAAA---11B.1.617.30.002985
ORF1ab/nsp2557K557delAAA---11B.1.6210.000089
ORF1ab/nsp2557K557KaaAaaG11B.1.6210.000089
ORF1ab/nsp2557K557IaAaaTa11B.1.6370.000073
ORF1ab/nsp2557K557delAAA---11B.340.013699
ORF1ab/nsp2557K557IaAaaTa11B.40.002208
ORF1ab/nsp2557K557delAAA---11B.570.015152
ORF1ab/nsp2557K557EAaaGaa11C.350.000774
ORF1ab/nsp2557K557KaaAaaG11D.20.000075
ORF1ab/nsp2557K557EAaaGaa11P.10.000016
ORF1ab/nsp2557K557delAAA---11P.10.000016
ORF1ab/nsp2557K557NaaAaaT11P.1.140.000048
ORF1ab/nsp2557K557RaAaaGa11P.1.150.000232
ORF1ab/nsp2557K557NaaAaaT11P.20.000187
ORF1ab/nsp2557K557delAAA---11P.20.000187
ORF1ab/nsp2557K557EAaaGaa11Q.10.000126
ORF1ab/nsp2557K557NaaAaaT11Z.10.00289