CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 557

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp2	557	K557R	K737R	nonsyn	aAa	aGa	349	346	0.991404	2474-2476
ORF1ab/nsp2	557	K557R	K737R	nonsyn	aAA	aGG	349	2	0.00573066	2474-2476
ORF1ab/nsp2	557	K557R	K737R	nonsyn	AAa	CGa	349	1	0.00286533	2474-2476
ORF1ab/nsp2	557	K557K	K737K	syn	aaA	aaG	155	155	1	2474-2476
ORF1ab/nsp2	557	K557Q	K737Q	nonsyn	Aaa	Caa	141	141	1	2474-2476
ORF1ab/nsp2	557	K557del	K737del	del	AAA	---	92	92	1	2474-2476
ORF1ab/nsp2	557	K557E	K737E	nonsyn	Aaa	Gaa	84	82	0.97619	2474-2476
ORF1ab/nsp2	557	K557E	K737E	nonsyn	AaA	GaG	84	2	0.0238095	2474-2476
ORF1ab/nsp2	557	K557N	K737N	nonsyn	aaA	aaT	35	18	0.514286	2474-2476
ORF1ab/nsp2	557	K557N	K737N	nonsyn	aaA	aaC	35	17	0.485714	2474-2476
ORF1ab/nsp2	557	K557T	K737T	nonsyn	aAa	aCa	30	27	0.9	2474-2476
ORF1ab/nsp2	557	K557T	K737T	nonsyn	aAA	aCT	30	2	0.0666667	2474-2476
ORF1ab/nsp2	557	K557T	K737T	nonsyn	aAA	aCC	30	1	0.0333333	2474-2476
ORF1ab/nsp2	557	K557I	K737I	nonsyn	aAa	aTa	19	19	1	2474-2476
ORF1ab/nsp2	557	K557X	K737X	nonsyn	Aaa	Taa	5	4	0.8	2474-2476
ORF1ab/nsp2	557	K557X	K737X	nonsyn	AAa	TGa	5	1	0.2	2474-2476
ORF1ab/nsp2	557	K557del1	K737del1	del	Aaa	-aa	3	3	1	2474-2476
ORF1ab/nsp2	557	K557S	K737S	nonsyn	aAA	aGT	3	2	0.666667	2474-2476
ORF1ab/nsp2	557	K557L	K737L	nonsyn	AAa	TTa	3	2	0.666667	2474-2476
ORF1ab/nsp2	557	K557S	K737S	nonsyn	AAa	TCa	3	1	0.333333	2474-2476
ORF1ab/nsp2	557	K557L	K737L	nonsyn	AAa	CTa	3	1	0.333333	2474-2476
ORF1ab/nsp2	557	K557del2	K737del2	del	aAA	a--	2	2	1	2474-2476
ORF1ab/nsp2	557	K557G	K737G	nonsyn	AAA	GGG	2	1	0.5	2474-2476
ORF1ab/nsp2	557	K557G	K737G	nonsyn	AAa	GGa	2	1	0.5	2474-2476
ORF1ab/nsp2	557	K557P	K737P	nonsyn	AAa	CCa	1	1	1	2474-2476

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp2	557	K557R	aAa	aGa	346	349	All	0.000066
ORF1ab/nsp2	557	K557R	aAA	aGG	2	349	All	0
ORF1ab/nsp2	557	K557R	AAa	CGa	1	349	All	0
ORF1ab/nsp2	557	K557R	aAa	aGa	228	228	N.4	0.970213
ORF1ab/nsp2	557	K557K	aaA	aaG	155	155	All	0.00003
ORF1ab/nsp2	557	K557Q	Aaa	Caa	141	141	All	0.000027
ORF1ab/nsp2	557	K557del	AAA	---	92	92	All	0.000018
ORF1ab/nsp2	557	K557E	Aaa	Gaa	82	84	All	0.000016
ORF1ab/nsp2	557	K557E	AaA	GaG	2	84	All	0
ORF1ab/nsp2	557	K557Q	Aaa	Caa	84	84	B.1.617.2	0.000316
ORF1ab/nsp2	557	K557E	Aaa	Gaa	44	44	AY.5	0.000909
ORF1ab/nsp2	557	K557Q	Aaa	Caa	39	39	AY.98	0.003081
ORF1ab/nsp2	557	K557R	aAa	aGa	36	37	B.1	0.00033
ORF1ab/nsp2	557	K557R	aAA	aGG	1	37	B.1	0.000009
ORF1ab/nsp2	557	K557N	aaA	aaT	18	35	All	0.000003
ORF1ab/nsp2	557	K557N	aaA	aaC	17	35	All	0.000003
ORF1ab/nsp2	557	K557T	aAa	aCa	27	30	All	0.000005
ORF1ab/nsp2	557	K557T	aAA	aCT	2	30	All	0
ORF1ab/nsp2	557	K557T	aAA	aCC	1	30	All	0
ORF1ab/nsp2	557	K557K	aaA	aaG	28	28	AY.70	0.005838
ORF1ab/nsp2	557	K557R	aAa	aGa	26	26	B.1.1.7	0.000023
ORF1ab/nsp2	557	K557K	aaA	aaG	25	25	B.1.1.355	0.384615
ORF1ab/nsp2	557	K557del	AAA	---	21	21	B.1.1.7	0.000019
ORF1ab/nsp2	557	K557I	aAa	aTa	19	19	All	0.000004
ORF1ab/nsp2	557	K557T	aAa	aCa	18	18	B.1.617.2	0.000068
ORF1ab/nsp2	557	K557K	aaA	aaG	15	15	AY.4	0.000023
ORF1ab/nsp2	557	K557K	aaA	aaG	12	12	B.1.1.7	0.000011
ORF1ab/nsp2	557	K557K	aaA	aaG	12	12	B.1.531	1
ORF1ab/nsp2	557	K557I	aAa	aTa	11	11	AY.7.1	0.00124
ORF1ab/nsp2	557	K557E	Aaa	Gaa	11	11	B.1.1.7	0.00001
ORF1ab/nsp2	557	K557N	aaA	aaT	5	10	AY.4	0.000008
ORF1ab/nsp2	557	K557N	aaA	aaC	5	10	AY.4	0.000008
ORF1ab/nsp2	557	K557R	aAa	aGa	8	8	AY.25	0.000048
ORF1ab/nsp2	557	K557R	aAa	aGa	7	7	AY.9	0.000473
ORF1ab/nsp2	557	K557del	AAA	---	7	7	B.1	0.000064
ORF1ab/nsp2	557	K557K	aaA	aaG	6	6	AY.103	0.000037
ORF1ab/nsp2	557	K557E	Aaa	Gaa	5	6	AY.4	0.000008
ORF1ab/nsp2	557	K557E	AaA	GaG	1	6	AY.4	0.000002
ORF1ab/nsp2	557	K557K	aaA	aaG	6	6	AY.98.1	0.000291
ORF1ab/nsp2	557	K557R	aAa	aGa	5	6	B.1.1	0.000091
ORF1ab/nsp2	557	K557R	AAa	CGa	1	6	B.1.1	0.000018
ORF1ab/nsp2	557	K557del	AAA	---	6	6	B.1.617.2	0.000023
ORF1ab/nsp2	557	K557R	aAa	aGa	6	6	P.1	0.000095
ORF1ab/nsp2	557	K557X	Aaa	Taa	4	5	All	0.000001
ORF1ab/nsp2	557	K557X	AAa	TGa	1	5	All	0
ORF1ab/nsp2	557	K557del	AAA	---	5	5	AY.4	0.000008
ORF1ab/nsp2	557	K557R	aAa	aGa	4	5	AY.4	0.000006
ORF1ab/nsp2	557	K557R	aAA	aGG	1	5	AY.4	0.000002
ORF1ab/nsp2	557	K557K	aaA	aaG	5	5	B.1.36.36	0.00301
ORF1ab/nsp2	557	K557N	aaA	aaC	3	5	B.1.617.2	0.000011
ORF1ab/nsp2	557	K557N	aaA	aaT	2	5	B.1.617.2	0.000008
ORF1ab/nsp2	557	K557del	AAA	---	4	4		0.222222
ORF1ab/nsp2	557	K557T	aAa	aCa	2	4		0.111111
ORF1ab/nsp2	557	K557T	aAA	aCT	2	4		0.111111
ORF1ab/nsp2	557	K557K	aaA	aaG	4	4	AY.102	0.000106
ORF1ab/nsp2	557	K557K	aaA	aaG	4	4	AY.116	0.001147
ORF1ab/nsp2	557	K557E	Aaa	Gaa	4	4	B.1.617.2	0.000015
ORF1ab/nsp2	557	K557del1	Aaa	-aa	3	3	All	0.000001
ORF1ab/nsp2	557	K557S	aAA	aGT	2	3	All	0
ORF1ab/nsp2	557	K557L	AAa	TTa	2	3	All	0
ORF1ab/nsp2	557	K557S	AAa	TCa	1	3	All	0
ORF1ab/nsp2	557	K557L	AAa	CTa	1	3	All	0
ORF1ab/nsp2	557	K557K	aaA	aaG	3	3	AY.44	0.000018
ORF1ab/nsp2	557	K557K	aaA	aaG	3	3	B.1	0.000027
ORF1ab/nsp2	557	K557N	aaA	aaT	2	3	B.1	0.000018
ORF1ab/nsp2	557	K557N	aaA	aaC	1	3	B.1	0.000009
ORF1ab/nsp2	557	K557K	aaA	aaG	3	3	B.1.1	0.000054
ORF1ab/nsp2	557	K557del	AAA	---	3	3	B.1.1.33	0.001263
ORF1ab/nsp2	557	K557Q	Aaa	Caa	3	3	B.1.1.7	0.000003
ORF1ab/nsp2	557	K557Q	Aaa	Caa	3	3	B.1.160	0.000094
ORF1ab/nsp2	557	K557del	AAA	---	3	3	B.1.177	0.00004
ORF1ab/nsp2	557	K557K	aaA	aaG	3	3	B.1.177.73	0.001699
ORF1ab/nsp2	557	K557R	aAa	aGa	3	3	B.1.509	0.002597
ORF1ab/nsp2	557	K557R	aAa	aGa	2	2		0.111111
ORF1ab/nsp2	557	K557N	aaA	aaT	2	2		0.111111
ORF1ab/nsp2	557	K557L	AAa	TTa	2	2		0.111111
ORF1ab/nsp2	557	K557S	aAA	aGT	2	2		0.111111
ORF1ab/nsp2	557	K557del2	aAA	a--	2	2	All	0
ORF1ab/nsp2	557	K557G	AAa	GGa	1	2	All	0
ORF1ab/nsp2	557	K557G	AAA	GGG	1	2	All	0
ORF1ab/nsp2	557	K557K	aaA	aaG	2	2	AY.111	0.000366
ORF1ab/nsp2	557	K557R	aAa	aGa	2	2	AY.120	0.000074
ORF1ab/nsp2	557	K557del	AAA	---	2	2	AY.25	0.000012
ORF1ab/nsp2	557	K557T	aAa	aCa	2	2	AY.4	0.000003
ORF1ab/nsp2	557	K557G	AAa	GGa	1	2	AY.4	0.000002
ORF1ab/nsp2	557	K557G	AAA	GGG	1	2	AY.4	0.000002
ORF1ab/nsp2	557	K557K	aaA	aaG	2	2	AY.43	0.000009
ORF1ab/nsp2	557	K557del	AAA	---	2	2	AY.5	0.000041
ORF1ab/nsp2	557	K557E	Aaa	Gaa	2	2	AY.51	0.001818
ORF1ab/nsp2	557	K557E	Aaa	Gaa	2	2	AY.75	0.000112
ORF1ab/nsp2	557	K557del	AAA	---	2	2	AY.9.2	0.000073
ORF1ab/nsp2	557	K557T	aAA	aCC	1	2	AY.98.1	0.000048
ORF1ab/nsp2	557	K557T	aAa	aCa	1	2	AY.98.1	0.000048
ORF1ab/nsp2	557	K557Q	Aaa	Caa	2	2	B.1.1	0.000036
ORF1ab/nsp2	557	K557del	AAA	---	2	2	B.1.1	0.000036
ORF1ab/nsp2	557	K557X	AAa	TGa	1	2	B.1.1	0.000018
ORF1ab/nsp2	557	K557X	Aaa	Taa	1	2	B.1.1	0.000018
ORF1ab/nsp2	557	K557R	aAa	aGa	2	2	B.1.1.33	0.000842
ORF1ab/nsp2	557	K557del	AAA	---	2	2	B.1.1.348	0.001592
ORF1ab/nsp2	557	K557Q	Aaa	Caa	2	2	B.1.1.519	0.000079
ORF1ab/nsp2	557	K557N	aaA	aaC	2	2	B.1.1.7	0.000002
ORF1ab/nsp2	557	K557K	aaA	aaG	2	2	B.1.177	0.000026
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	2	B.1.177	0.000013
ORF1ab/nsp2	557	K557E	AaA	GaG	1	2	B.1.177	0.000013
ORF1ab/nsp2	557	K557del1	Aaa	-aa	2	2	B.1.2	0.000018
ORF1ab/nsp2	557	K557E	Aaa	Gaa	2	2	B.1.2	0.000018
ORF1ab/nsp2	557	K557K	aaA	aaG	2	2	B.1.258	0.000133
ORF1ab/nsp2	557	K557R	aAa	aGa	2	2	B.1.346	0.002621
ORF1ab/nsp2	557	K557del	AAA	---	2	2	B.1.424	0.016129
ORF1ab/nsp2	557	K557Q	Aaa	Caa	2	2	B.1.429	0.000047
ORF1ab/nsp2	557	K557del	AAA	---	2	2	B.1.429	0.000047
ORF1ab/nsp2	557	K557R	aAa	aGa	2	2	B.1.617.1	0.000258
ORF1ab/nsp2	557	K557K	aaA	aaG	2	2	B.1.617.2	0.000008
ORF1ab/nsp2	557	K557del	AAA	---	2	2	N.6	0.014184
ORF1ab/nsp2	557	K557K	aaA	aaG	2	2	P.1	0.000032
ORF1ab/nsp2	557	K557N	aaA	aaC	1	2	P.1	0.000016
ORF1ab/nsp2	557	K557N	aaA	aaT	1	2	P.1	0.000016
ORF1ab/nsp2	557	K557I	aAa	aTa	1	1	A.2.2	0.001689
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	A.3	0.002096
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	A.6	0.005128
ORF1ab/nsp2	557	K557P	AAa	CCa	1	1	All	0
ORF1ab/nsp2	557	K557T	aAa	aCa	1	1	AY.102	0.000027
ORF1ab/nsp2	557	K557N	aaA	aaC	1	1	AY.103	0.000006
ORF1ab/nsp2	557	K557del	AAA	---	1	1	AY.108	0.001103
ORF1ab/nsp2	557	K557del	AAA	---	1	1	AY.113	0.000142
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	AY.114	0.000231
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	AY.119	0.000035
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	AY.16	0.00038
ORF1ab/nsp2	557	K557del	AAA	---	1	1	AY.19	0.00114
ORF1ab/nsp2	557	K557T	aAa	aCa	1	1	AY.20	0.000039
ORF1ab/nsp2	557	K557I	aAa	aTa	1	1	AY.20	0.000039
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	AY.23.1	0.000417
ORF1ab/nsp2	557	K557Q	Aaa	Caa	1	1	AY.25	0.000006
ORF1ab/nsp2	557	K557N	aaA	aaT	1	1	AY.25	0.000006
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	1	AY.25	0.000006
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	1	AY.26	0.000028
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	AY.26	0.000028
ORF1ab/nsp2	557	K557N	aaA	aaT	1	1	AY.29	0.000016
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	AY.3	0.00001
ORF1ab/nsp2	557	K557N	aaA	aaC	1	1	AY.3	0.00001
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	AY.3	0.00001
ORF1ab/nsp2	557	K557del	AAA	---	1	1	AY.3	0.00001
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	AY.39	0.000025
ORF1ab/nsp2	557	K557Q	Aaa	Caa	1	1	AY.39	0.000025
ORF1ab/nsp2	557	K557Q	Aaa	Caa	1	1	AY.4	0.000002
ORF1ab/nsp2	557	K557del	AAA	---	1	1	AY.42	0.00004
ORF1ab/nsp2	557	K557N	aaA	aaC	1	1	AY.43	0.000004
ORF1ab/nsp2	557	K557del	AAA	---	1	1	AY.43	0.000004
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	AY.44	0.000006
ORF1ab/nsp2	557	K557del	AAA	---	1	1	AY.44	0.000006
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	1	AY.44	0.000006
ORF1ab/nsp2	557	K557del	AAA	---	1	1	AY.46.2	0.000635
ORF1ab/nsp2	557	K557del	AAA	---	1	1	AY.46.6	0.000072
ORF1ab/nsp2	557	K557Q	Aaa	Caa	1	1	AY.54	0.000095
ORF1ab/nsp2	557	K557del2	aAA	a--	1	1	AY.6	0.000041
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	AY.61	0.000105
ORF1ab/nsp2	557	K557I	aAa	aTa	1	1	AY.70	0.000209
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	AY.75	0.000056
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	AY.75.1	0.00018
ORF1ab/nsp2	557	K557N	aaA	aaC	1	1	AY.84	0.000437
ORF1ab/nsp2	557	K557del	AAA	---	1	1	AY.84	0.000437
ORF1ab/nsp2	557	K557N	aaA	aaC	1	1	AY.98.1	0.000048
ORF1ab/nsp2	557	K557del	AAA	---	1	1	AY.99	0.001049
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B	0.000128
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	B	0.000128
ORF1ab/nsp2	557	K557I	aAa	aTa	1	1	B.1	0.000009
ORF1ab/nsp2	557	K557Q	Aaa	Caa	1	1	B.1	0.000009
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	1	B.1	0.000009
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	1	B.1.1	0.000018
ORF1ab/nsp2	557	K557S	AAa	TCa	1	1	B.1.1	0.000018
ORF1ab/nsp2	557	K557P	AAa	CCa	1	1	B.1.1	0.000018
ORF1ab/nsp2	557	K557T	aAa	aCa	1	1	B.1.1	0.000018
ORF1ab/nsp2	557	K557del1	Aaa	-aa	1	1	B.1.1	0.000018
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	B.1.1.222	0.000204
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.1.1.416	0.000905
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp2	557	K557T	aAa	aCa	1	1	B.1.1.7	0.000001
ORF1ab/nsp2	557	K557X	Aaa	Taa	1	1	B.1.1.7	0.000001
ORF1ab/nsp2	557	K557L	AAa	CTa	1	1	B.1.160	0.000031
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	1	B.1.177.20	0.001517
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	B.1.177.26	0.006993
ORF1ab/nsp2	557	K557del2	aAA	a--	1	1	B.1.177.43	0.001477
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.1.179	0.003759
ORF1ab/nsp2	557	K557X	Aaa	Taa	1	1	B.1.2	0.000009
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	B.1.2	0.000009
ORF1ab/nsp2	557	K557X	Aaa	Taa	1	1	B.1.243	0.00007
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.1.258.3	0.001675
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	B.1.265	0.001271
ORF1ab/nsp2	557	K557N	aaA	aaT	1	1	B.1.351	0.00003
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	B.1.36	0.000146
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	1	B.1.36	0.000146
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.1.36.18	0.00042
ORF1ab/nsp2	557	K557I	aAa	aTa	1	1	B.1.36.29	0.000517
ORF1ab/nsp2	557	K557I	aAa	aTa	1	1	B.1.36.39	0.002217
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	B.1.361	0.001289
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	1	B.1.362	0.001541
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	B.1.369	0.000285
ORF1ab/nsp2	557	K557Q	Aaa	Caa	1	1	B.1.427	0.00005
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	B.1.526	0.000024
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.1.561	0.000397
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.1.617.3	0.002985
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.1.621	0.000089
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	B.1.621	0.000089
ORF1ab/nsp2	557	K557I	aAa	aTa	1	1	B.1.637	0.000073
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.34	0.013699
ORF1ab/nsp2	557	K557I	aAa	aTa	1	1	B.4	0.002208
ORF1ab/nsp2	557	K557del	AAA	---	1	1	B.57	0.015152
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	1	C.35	0.000774
ORF1ab/nsp2	557	K557K	aaA	aaG	1	1	D.2	0.000075
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	1	P.1	0.000016
ORF1ab/nsp2	557	K557del	AAA	---	1	1	P.1	0.000016
ORF1ab/nsp2	557	K557N	aaA	aaT	1	1	P.1.14	0.000048
ORF1ab/nsp2	557	K557R	aAa	aGa	1	1	P.1.15	0.000232
ORF1ab/nsp2	557	K557N	aaA	aaT	1	1	P.2	0.000187
ORF1ab/nsp2	557	K557del	AAA	---	1	1	P.2	0.000187
ORF1ab/nsp2	557	K557E	Aaa	Gaa	1	1	Q.1	0.000126
ORF1ab/nsp2	557	K557N	aaA	aaT	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.