CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 554 | K554E | K734E | nonsyn | Aaa | Gaa | 339 | 339 | 1 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554K | K734K | syn | aaA | aaG | 205 | 205 | 1 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554R | K734R | nonsyn | aAa | aGa | 167 | 166 | 0.994012 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554R | K734R | nonsyn | AAa | CGa | 167 | 1 | 0.00598802 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554N | K734N | nonsyn | aaA | aaC | 139 | 110 | 0.791367 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554N | K734N | nonsyn | aaA | aaT | 139 | 29 | 0.208633 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554del | K734del | del | AAA | --- | 74 | 74 | 1 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554Q | K734Q | nonsyn | Aaa | Caa | 53 | 51 | 0.962264 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554Q | K734Q | nonsyn | AaA | CaG | 53 | 2 | 0.0377358 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554T | K734T | nonsyn | aAa | aCa | 52 | 52 | 1 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554I | K734I | nonsyn | aAa | aTa | 14 | 14 | 1 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554del1 | K734del1 | del | Aaa | -aa | 8 | 7 | 0.875 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554del1 | K734del1 | del | aaA | aa- | 8 | 1 | 0.125 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554X | K734X | nonsyn | Aaa | Taa | 5 | 3 | 0.6 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554X | K734X | nonsyn | AAa | TGa | 5 | 1 | 0.2 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554X | K734X | nonsyn | AaA | TaG | 5 | 1 | 0.2 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554P | K734P | nonsyn | AAa | CCa | 2 | 2 | 1 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554G | K734G | nonsyn | AAA | GGT | 1 | 1 | 1 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554H | K734H | nonsyn | AaA | CaT | 1 | 1 | 1 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554Y | K734Y | nonsyn | AaA | TaT | 1 | 1 | 1 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554del2 | K734del2 | del | aAA | a-- | 1 | 1 | 1 | 2465-2467 |
ORF1ab/nsp2 | 554 | K554L | K734L | nonsyn | AAA | CTT | 1 | 1 | 1 | 2465-2467 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 339 | 339 | All | 0.000065 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 205 | 205 | All | 0.000039 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 166 | 167 | All | 0.000032 |
ORF1ab/nsp2 | 554 | K554R | AAa | CGa | 1 | 167 | All | 0 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 110 | 139 | All | 0.000021 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 29 | 139 | All | 0.000006 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 111 | 111 | AY.94 | 0.049137 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 90 | 90 | B.1.1.7 | 0.000081 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 74 | 74 | All | 0.000014 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 62 | 62 | B.1.444 | 0.984127 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 51 | 53 | All | 0.00001 |
ORF1ab/nsp2 | 554 | K554Q | AaA | CaG | 2 | 53 | All | 0 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 52 | 52 | All | 0.00001 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 40 | 40 | AY.4 | 0.000062 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 39 | 39 | B.1.429 | 0.000918 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 34 | 34 | B.1.1.7 | 0.00003 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 31 | 31 | B.1.177.37 | 0.837838 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 27 | 27 | AY.113 | 0.003845 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 24 | 25 | B.1.1.7 | 0.000021 |
ORF1ab/nsp2 | 554 | K554R | AAa | CGa | 1 | 25 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 24 | 24 | AY.103 | 0.000149 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 14 | 19 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 5 | 19 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 18 | 18 | B.1.478 | 0.211765 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp2 | 554 | K554I | aAa | aTa | 14 | 14 | All | 0.000003 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 11 | 11 | AY.117 | 0.00093 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 8 | 10 | AY.3 | 0.00008 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 2 | 10 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp2 | 554 | K554del1 | Aaa | -aa | 7 | 8 | All | 0.000001 |
ORF1ab/nsp2 | 554 | K554del1 | aaA | aa- | 1 | 8 | All | 0 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 8 | 8 | AY.54 | 0.000763 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp2 | 554 | K554X | Aaa | Taa | 3 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 554 | K554X | AAa | TGa | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 554 | K554X | AaA | TaG | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 3 | 5 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 2 | 5 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 5 | 5 | B.1.177.20 | 0.007587 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 3 | 4 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 1 | 4 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 3 | 4 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 4 | 4 | B.1.1.526 | 0.014184 |
ORF1ab/nsp2 | 554 | K554I | aAa | aTa | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 3 | 3 | B.1.1.319 | 0.052632 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 3 | 3 | B.1.119 | 0.031579 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 2 | 3 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 3 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 3 | 3 | B.1.177.45 | 0.001144 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 3 | 3 | B.1.554 | 0.013216 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 554 | K554P | AAa | CCa | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 554 | K554P | AAa | CCa | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 554 | K554X | AaA | TaG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554X | Aaa | Taa | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554Q | AaA | CaG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 554 | K554I | aAa | aTa | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp2 | 554 | K554G | AAA | GGT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 554 | K554del2 | aAA | a-- | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 554 | K554Y | AaA | TaT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 554 | K554H | AaA | CaT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 554 | K554L | AAA | CTT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 554 | K554I | aAa | aTa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 554 | K554del1 | Aaa | -aa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 554 | K554del1 | Aaa | -aa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 554 | K554X | Aaa | Taa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 554 | K554del2 | aAA | a-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 554 | K554I | aAa | aTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp2 | 554 | K554G | AAA | GGT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 554 | K554del1 | Aaa | -aa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 554 | K554X | Aaa | Taa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 554 | K554I | aAa | aTa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 554 | K554H | AaA | CaT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554Y | AaA | TaT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554L | AAA | CTT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp2 | 554 | K554del1 | Aaa | -aa | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp2 | 554 | K554del1 | Aaa | -aa | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 554 | K554X | AAa | TGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 554 | K554I | aAa | aTa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | B.1.177.26 | 0.006993 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 554 | K554del1 | aaA | aa- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 554 | K554I | aAa | aTa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 554 | K554I | aAa | aTa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 554 | K554T | aAa | aCa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 554 | K554I | aAa | aTa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 554 | K554del1 | Aaa | -aa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 554 | K554R | aAa | aGa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 554 | K554Q | AaA | CaG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 554 | K554I | aAa | aTa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 554 | K554del1 | Aaa | -aa | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 554 | K554Q | Aaa | Caa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 554 | K554E | Aaa | Gaa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 554 | K554K | aaA | aaG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp2 | 554 | K554del | AAA | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 554 | K554N | aaA | aaC | 1 | 1 | Q.1 | 0.000126 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|