CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 554

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2554K554EK734EnonsynAaaGaa33933912465-2467
ORF1ab/nsp2554K554KK734KsynaaAaaG20520512465-2467
ORF1ab/nsp2554K554RK734RnonsynaAaaGa1671660.9940122465-2467
ORF1ab/nsp2554K554RK734RnonsynAAaCGa16710.005988022465-2467
ORF1ab/nsp2554K554NK734NnonsynaaAaaC1391100.7913672465-2467
ORF1ab/nsp2554K554NK734NnonsynaaAaaT139290.2086332465-2467
ORF1ab/nsp2554K554delK734deldelAAA---747412465-2467
ORF1ab/nsp2554K554QK734QnonsynAaaCaa53510.9622642465-2467
ORF1ab/nsp2554K554QK734QnonsynAaACaG5320.03773582465-2467
ORF1ab/nsp2554K554TK734TnonsynaAaaCa525212465-2467
ORF1ab/nsp2554K554IK734InonsynaAaaTa141412465-2467
ORF1ab/nsp2554K554del1K734del1delAaa-aa870.8752465-2467
ORF1ab/nsp2554K554del1K734del1delaaAaa-810.1252465-2467
ORF1ab/nsp2554K554XK734XnonsynAaaTaa530.62465-2467
ORF1ab/nsp2554K554XK734XnonsynAAaTGa510.22465-2467
ORF1ab/nsp2554K554XK734XnonsynAaATaG510.22465-2467
ORF1ab/nsp2554K554PK734PnonsynAAaCCa2212465-2467
ORF1ab/nsp2554K554GK734GnonsynAAAGGT1112465-2467
ORF1ab/nsp2554K554HK734HnonsynAaACaT1112465-2467
ORF1ab/nsp2554K554YK734YnonsynAaATaT1112465-2467
ORF1ab/nsp2554K554del2K734del2delaAAa--1112465-2467
ORF1ab/nsp2554K554LK734LnonsynAAACTT1112465-2467

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2554K554EAaaGaa339339All0.000065
ORF1ab/nsp2554K554KaaAaaG205205All0.000039
ORF1ab/nsp2554K554RaAaaGa166167All0.000032
ORF1ab/nsp2554K554RAAaCGa1167All0
ORF1ab/nsp2554K554NaaAaaC110139All0.000021
ORF1ab/nsp2554K554NaaAaaT29139All0.000006
ORF1ab/nsp2554K554EAaaGaa111111AY.940.049137
ORF1ab/nsp2554K554EAaaGaa9090B.1.1.70.000081
ORF1ab/nsp2554K554delAAA---7474All0.000014
ORF1ab/nsp2554K554RaAaaGa6262B.1.4440.984127
ORF1ab/nsp2554K554QAaaCaa5153All0.00001
ORF1ab/nsp2554K554QAaACaG253All0
ORF1ab/nsp2554K554TaAaaCa5252All0.00001
ORF1ab/nsp2554K554KaaAaaG4444B.1.1.70.000039
ORF1ab/nsp2554K554KaaAaaG4040AY.40.000062
ORF1ab/nsp2554K554EAaaGaa3939B.1.4290.000918
ORF1ab/nsp2554K554TaAaaCa3434B.1.1.70.00003
ORF1ab/nsp2554K554NaaAaaC3131B.1.177.370.837838
ORF1ab/nsp2554K554NaaAaaC2727AY.1130.003845
ORF1ab/nsp2554K554RaAaaGa2425B.1.1.70.000021
ORF1ab/nsp2554K554RAAaCGa125B.1.1.70.000001
ORF1ab/nsp2554K554EAaaGaa2424AY.1030.000149
ORF1ab/nsp2554K554NaaAaaC1419B.1.1.70.000013
ORF1ab/nsp2554K554NaaAaaT519B.1.1.70.000004
ORF1ab/nsp2554K554EAaaGaa1818B.1.4780.211765
ORF1ab/nsp2554K554RaAaaGa1717B.10.000156
ORF1ab/nsp2554K554delAAA---1616B.1.1.70.000014
ORF1ab/nsp2554K554IaAaaTa1414All0.000003
ORF1ab/nsp2554K554QAaaCaa1313B.1.617.20.000049
ORF1ab/nsp2554K554KaaAaaG1212B.1.2580.000799
ORF1ab/nsp2554K554RaAaaGa1111AY.1170.00093
ORF1ab/nsp2554K554NaaAaaC810AY.30.00008
ORF1ab/nsp2554K554NaaAaaT210AY.30.00002
ORF1ab/nsp2554K554RaAaaGa99AY.40.000014
ORF1ab/nsp2554K554KaaAaaG99B.1.5260.000212
ORF1ab/nsp2554K554EAaaGaa99P.1.140.00043
ORF1ab/nsp2554K554del1Aaa-aa78All0.000001
ORF1ab/nsp2554K554del1aaAaa-18All0
ORF1ab/nsp2554K554QAaaCaa88AY.250.000048
ORF1ab/nsp2554K554KaaAaaG88AY.540.000763
ORF1ab/nsp2554K554delAAA---77B.10.000064
ORF1ab/nsp2554K554QAaaCaa77B.1.1.70.000006
ORF1ab/nsp2554K554KaaAaaG77B.1.20.000062
ORF1ab/nsp2554K554KaaAaaG77B.1.4290.000165
ORF1ab/nsp2554K554EAaaGaa77P.10.00011
ORF1ab/nsp2554K554KaaAaaG66AY.250.000036
ORF1ab/nsp2554K554XAaaTaa35All0.000001
ORF1ab/nsp2554K554XAAaTGa15All0
ORF1ab/nsp2554K554XAaATaG15All0
ORF1ab/nsp2554K554KaaAaaG55AY.1030.000031
ORF1ab/nsp2554K554EAaaGaa55AY.40.000008
ORF1ab/nsp2554K554NaaAaaT35AY.430.000013
ORF1ab/nsp2554K554NaaAaaC25AY.430.000009
ORF1ab/nsp2554K554RaAaaGa55B.1.177.200.007587
ORF1ab/nsp2554K554KaaAaaG55B.1.617.20.000019
ORF1ab/nsp2554K554delAAA---440.222222
ORF1ab/nsp2554K554QAaaCaa44AY.1020.000106
ORF1ab/nsp2554K554TaAaaCa44AY.1030.000025
ORF1ab/nsp2554K554NaaAaaC34AY.250.000018
ORF1ab/nsp2554K554NaaAaaT14AY.250.000006
ORF1ab/nsp2554K554KaaAaaG44AY.30.00004
ORF1ab/nsp2554K554EAaaGaa44AY.320.00213
ORF1ab/nsp2554K554RaAaaGa44AY.330.000267
ORF1ab/nsp2554K554NaaAaaC34AY.440.000018
ORF1ab/nsp2554K554NaaAaaT14AY.440.000006
ORF1ab/nsp2554K554KaaAaaG44B.1.10.000073
ORF1ab/nsp2554K554KaaAaaG44B.1.1.5260.014184
ORF1ab/nsp2554K554IaAaaTa44B.1.1.70.000004
ORF1ab/nsp2554K554KaaAaaG33AY.1000.000138
ORF1ab/nsp2554K554KaaAaaG33AY.1020.00008
ORF1ab/nsp2554K554EAaaGaa33AY.250.000018
ORF1ab/nsp2554K554NaaAaaC33AY.260.000085
ORF1ab/nsp2554K554KaaAaaG33AY.360.000445
ORF1ab/nsp2554K554delAAA---33AY.40.000005
ORF1ab/nsp2554K554KaaAaaG33AY.430.000013
ORF1ab/nsp2554K554KaaAaaG33AY.710.001425
ORF1ab/nsp2554K554KaaAaaG33B.10.000027
ORF1ab/nsp2554K554RaAaaGa33B.1.10.000054
ORF1ab/nsp2554K554delAAA---33B.1.10.000054
ORF1ab/nsp2554K554RaAaaGa33B.1.1.3190.052632
ORF1ab/nsp2554K554delAAA---33B.1.1.330.001263
ORF1ab/nsp2554K554RaAaaGa33B.1.1190.031579
ORF1ab/nsp2554K554NaaAaaT23B.1.1770.000026
ORF1ab/nsp2554K554NaaAaaC13B.1.1770.000013
ORF1ab/nsp2554K554RaAaaGa33B.1.177.450.001144
ORF1ab/nsp2554K554RaAaaGa33B.1.5540.013216
ORF1ab/nsp2554K554RaAaaGa33B.1.617.20.000011
ORF1ab/nsp2554K554delAAA---33B.1.617.20.000011
ORF1ab/nsp2554K554NaaAaaT23B.1.617.20.000008
ORF1ab/nsp2554K554NaaAaaC13B.1.617.20.000004
ORF1ab/nsp2554K554RaAaaGa33P.10.000047
ORF1ab/nsp2554K554PAAaCCa220.111111
ORF1ab/nsp2554K554PAAaCCa22All0
ORF1ab/nsp2554K554EAaaGaa22AY.1110.000366
ORF1ab/nsp2554K554RaAaaGa22AY.1190.000071
ORF1ab/nsp2554K554delAAA---22AY.250.000012
ORF1ab/nsp2554K554QAaaCaa22AY.290.000032
ORF1ab/nsp2554K554EAaaGaa22AY.30.00002
ORF1ab/nsp2554K554KaaAaaG22AY.3.10.000171
ORF1ab/nsp2554K554QAaaCaa22AY.390.000049
ORF1ab/nsp2554K554TaAaaCa22AY.40.000003
ORF1ab/nsp2554K554QAaaCaa22AY.40.000003
ORF1ab/nsp2554K554NaaAaaT22AY.4.20.000043
ORF1ab/nsp2554K554EAaaGaa22AY.430.000009
ORF1ab/nsp2554K554delAAA---22AY.430.000009
ORF1ab/nsp2554K554QAaaCaa22AY.440.000012
ORF1ab/nsp2554K554KaaAaaG22AY.440.000012
ORF1ab/nsp2554K554delAAA---22AY.46.60.000144
ORF1ab/nsp2554K554EAaaGaa22AY.510.001818
ORF1ab/nsp2554K554QAaaCaa22AY.570.001312
ORF1ab/nsp2554K554QAaaCaa22B.10.000018
ORF1ab/nsp2554K554TaAaaCa22B.10.000018
ORF1ab/nsp2554K554EAaaGaa22B.10.000018
ORF1ab/nsp2554K554NaaAaaT12B.10.000009
ORF1ab/nsp2554K554NaaAaaC12B.10.000009
ORF1ab/nsp2554K554XAaATaG12B.1.10.000018
ORF1ab/nsp2554K554XAaaTaa12B.1.10.000018
ORF1ab/nsp2554K554QAaaCaa12B.1.10.000018
ORF1ab/nsp2554K554QAaACaG12B.1.10.000018
ORF1ab/nsp2554K554NaaAaaT22B.1.1.1760.000879
ORF1ab/nsp2554K554delAAA---22B.1.1.3480.001592
ORF1ab/nsp2554K554KaaAaaG22B.1.1.5190.000079
ORF1ab/nsp2554K554IaAaaTa22B.1.177.730.001133
ORF1ab/nsp2554K554NaaAaaT22B.1.2580.000133
ORF1ab/nsp2554K554NaaAaaC22B.1.3510.000059
ORF1ab/nsp2554K554KaaAaaG22B.1.3510.000059
ORF1ab/nsp2554K554delAAA---22B.1.4240.016129
ORF1ab/nsp2554K554delAAA---22B.1.4290.000047
ORF1ab/nsp2554K554delAAA---22N.60.014184
ORF1ab/nsp2554K554NaaAaaC22P.1.140.000096
ORF1ab/nsp2554K554KaaAaaG11A.230.010526
ORF1ab/nsp2554K554GAAAGGT11All0
ORF1ab/nsp2554K554del2aAAa--11All0
ORF1ab/nsp2554K554YAaATaT11All0
ORF1ab/nsp2554K554HAaACaT11All0
ORF1ab/nsp2554K554LAAACTT11All0
ORF1ab/nsp2554K554QAaaCaa11AY.1000.000046
ORF1ab/nsp2554K554RaAaaGa11AY.1020.000027
ORF1ab/nsp2554K554IaAaaTa11AY.1020.000027
ORF1ab/nsp2554K554NaaAaaC11AY.1020.000027
ORF1ab/nsp2554K554QAaaCaa11AY.1030.000006
ORF1ab/nsp2554K554RaAaaGa11AY.1030.000006
ORF1ab/nsp2554K554NaaAaaC11AY.1030.000006
ORF1ab/nsp2554K554delAAA---11AY.1080.001103
ORF1ab/nsp2554K554RaAaaGa11AY.1130.000142
ORF1ab/nsp2554K554KaaAaaG11AY.1130.000142
ORF1ab/nsp2554K554delAAA---11AY.1130.000142
ORF1ab/nsp2554K554EAaaGaa11AY.1160.000287
ORF1ab/nsp2554K554EAaaGaa11AY.1190.000035
ORF1ab/nsp2554K554NaaAaaC11AY.1190.000035
ORF1ab/nsp2554K554KaaAaaG11AY.160.00038
ORF1ab/nsp2554K554QAaaCaa11AY.230.00007
ORF1ab/nsp2554K554del1Aaa-aa11AY.230.00007
ORF1ab/nsp2554K554KaaAaaG11AY.240.000431
ORF1ab/nsp2554K554KaaAaaG11AY.260.000028
ORF1ab/nsp2554K554del1Aaa-aa11AY.260.000028
ORF1ab/nsp2554K554KaaAaaG11AY.290.000016
ORF1ab/nsp2554K554TaAaaCa11AY.30.00001
ORF1ab/nsp2554K554RaAaaGa11AY.30.00001
ORF1ab/nsp2554K554QAaaCaa11AY.30.00001
ORF1ab/nsp2554K554delAAA---11AY.30.00001
ORF1ab/nsp2554K554NaaAaaC11AY.330.000067
ORF1ab/nsp2554K554XAaaTaa11AY.330.000067
ORF1ab/nsp2554K554NaaAaaT11AY.340.000097
ORF1ab/nsp2554K554NaaAaaT11AY.40.000002
ORF1ab/nsp2554K554del2aAAa--11AY.40.000002
ORF1ab/nsp2554K554KaaAaaG11AY.4.20.000022
ORF1ab/nsp2554K554delAAA---11AY.420.00004
ORF1ab/nsp2554K554TaAaaCa11AY.420.00004
ORF1ab/nsp2554K554EAaaGaa11AY.420.00004
ORF1ab/nsp2554K554RaAaaGa11AY.430.000004
ORF1ab/nsp2554K554RaAaaGa11AY.440.000006
ORF1ab/nsp2554K554EAaaGaa11AY.450.000122
ORF1ab/nsp2554K554RaAaaGa11AY.450.000122
ORF1ab/nsp2554K554KaaAaaG11AY.460.000104
ORF1ab/nsp2554K554NaaAaaT11AY.460.000104
ORF1ab/nsp2554K554EAaaGaa11AY.470.000031
ORF1ab/nsp2554K554EAaaGaa11AY.50.000021
ORF1ab/nsp2554K554TaAaaCa11AY.540.000095
ORF1ab/nsp2554K554TaAaaCa11AY.60.000041
ORF1ab/nsp2554K554EAaaGaa11AY.690.000187
ORF1ab/nsp2554K554KaaAaaG11AY.790.001211
ORF1ab/nsp2554K554delAAA---11AY.840.000437
ORF1ab/nsp2554K554NaaAaaT11AY.9.20.000037
ORF1ab/nsp2554K554delAAA---11AY.9.20.000037
ORF1ab/nsp2554K554IaAaaTa11AY.920.000287
ORF1ab/nsp2554K554EAaaGaa11AY.930.000273
ORF1ab/nsp2554K554EAaaGaa11AY.98.10.000048
ORF1ab/nsp2554K554NaaAaaC11AY.98.10.000048
ORF1ab/nsp2554K554delAAA---11AY.990.001049
ORF1ab/nsp2554K554KaaAaaG11AY.99.20.000092
ORF1ab/nsp2554K554EAaaGaa11AZ.10.000867
ORF1ab/nsp2554K554GAAAGGT11B0.000128
ORF1ab/nsp2554K554del1Aaa-aa11B.10.000009
ORF1ab/nsp2554K554XAaaTaa11B.10.000009
ORF1ab/nsp2554K554IaAaaTa11B.10.000009
ORF1ab/nsp2554K554HAaACaT11B.1.10.000018
ORF1ab/nsp2554K554YAaATaT11B.1.10.000018
ORF1ab/nsp2554K554TaAaaCa11B.1.10.000018
ORF1ab/nsp2554K554LAAACTT11B.1.10.000018
ORF1ab/nsp2554K554NaaAaaT11B.1.10.000018
ORF1ab/nsp2554K554EAaaGaa11B.1.10.000018
ORF1ab/nsp2554K554EAaaGaa11B.1.1.1570.000913
ORF1ab/nsp2554K554del1Aaa-aa11B.1.1.2260.005814
ORF1ab/nsp2554K554KaaAaaG11B.1.1.2650.003155
ORF1ab/nsp2554K554del1Aaa-aa11B.1.1.3630.005988
ORF1ab/nsp2554K554delAAA---11B.1.1.4160.000905
ORF1ab/nsp2554K554delAAA---11B.1.1.4480.002033
ORF1ab/nsp2554K554XAAaTGa11B.1.1.70.000001
ORF1ab/nsp2554K554TaAaaCa11B.1.1600.000031
ORF1ab/nsp2554K554TaAaaCa11B.1.160.220.006757
ORF1ab/nsp2554K554delAAA---11B.1.1770.000013
ORF1ab/nsp2554K554KaaAaaG11B.1.1770.000013
ORF1ab/nsp2554K554RaAaaGa11B.1.1770.000013
ORF1ab/nsp2554K554IaAaaTa11B.1.1770.000013
ORF1ab/nsp2554K554KaaAaaG11B.1.177.150.000631
ORF1ab/nsp2554K554EAaaGaa11B.1.177.210.000076
ORF1ab/nsp2554K554EAaaGaa11B.1.177.260.006993
ORF1ab/nsp2554K554delAAA---11B.1.177.540.000606
ORF1ab/nsp2554K554del1aaAaa-11B.1.177.570.000281
ORF1ab/nsp2554K554NaaAaaC11B.1.177.750.001041
ORF1ab/nsp2554K554delAAA---11B.1.177.830.001481
ORF1ab/nsp2554K554delAAA---11B.1.1790.003759
ORF1ab/nsp2554K554IaAaaTa11B.1.20.000009
ORF1ab/nsp2554K554KaaAaaG11B.1.221.10.002907
ORF1ab/nsp2554K554KaaAaaG11B.1.2320.000537
ORF1ab/nsp2554K554TaAaaCa11B.1.2340.000132
ORF1ab/nsp2554K554NaaAaaC11B.1.2430.00007
ORF1ab/nsp2554K554NaaAaaC11B.1.3400.004292
ORF1ab/nsp2554K554TaAaaCa11B.1.3510.00003
ORF1ab/nsp2554K554RaAaaGa11B.1.3510.00003
ORF1ab/nsp2554K554IaAaaTa11B.1.3510.00003
ORF1ab/nsp2554K554KaaAaaG11B.1.351.50.0006
ORF1ab/nsp2554K554KaaAaaG11B.1.36.10.00114
ORF1ab/nsp2554K554delAAA---11B.1.36.180.00042
ORF1ab/nsp2554K554KaaAaaG11B.1.3670.000792
ORF1ab/nsp2554K554KaaAaaG11B.1.3690.000285
ORF1ab/nsp2554K554EAaaGaa11B.1.3960.000706
ORF1ab/nsp2554K554KaaAaaG11B.1.4270.00005
ORF1ab/nsp2554K554EAaaGaa11B.1.4270.00005
ORF1ab/nsp2554K554TaAaaCa11B.1.5250.000113
ORF1ab/nsp2554K554KaaAaaG11B.1.5250.000113
ORF1ab/nsp2554K554IaAaaTa11B.1.5260.000024
ORF1ab/nsp2554K554delAAA---11B.1.5610.000397
ORF1ab/nsp2554K554KaaAaaG11B.1.5640.000426
ORF1ab/nsp2554K554del1Aaa-aa11B.1.5950.000261
ORF1ab/nsp2554K554RaAaaGa11B.1.595.40.007299
ORF1ab/nsp2554K554NaaAaaT11B.1.6090.000479
ORF1ab/nsp2554K554RaAaaGa11B.1.617.10.000129
ORF1ab/nsp2554K554EAaaGaa11B.1.617.10.000129
ORF1ab/nsp2554K554QAaACaG11B.1.617.10.000129
ORF1ab/nsp2554K554EAaaGaa11B.1.617.20.000004
ORF1ab/nsp2554K554IaAaaTa11B.1.617.20.000004
ORF1ab/nsp2554K554delAAA---11B.1.617.30.002985
ORF1ab/nsp2554K554QAaaCaa11B.1.6210.000089
ORF1ab/nsp2554K554delAAA---11B.1.6210.000089
ORF1ab/nsp2554K554del1Aaa-aa11B.1.6270.00202
ORF1ab/nsp2554K554delAAA---11B.340.013699
ORF1ab/nsp2554K554KaaAaaG11B.400.000364
ORF1ab/nsp2554K554delAAA---11B.570.015152
ORF1ab/nsp2554K554QAaaCaa11C.370.000116
ORF1ab/nsp2554K554NaaAaaC11C.370.000116
ORF1ab/nsp2554K554EAaaGaa11C.370.000116
ORF1ab/nsp2554K554NaaAaaC11P.10.000016
ORF1ab/nsp2554K554KaaAaaG11P.10.000016
ORF1ab/nsp2554K554delAAA---11P.10.000016
ORF1ab/nsp2554K554NaaAaaC11P.1.100.000269
ORF1ab/nsp2554K554delAAA---11P.20.000187
ORF1ab/nsp2554K554NaaAaaC11Q.10.000126