CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 554

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp2	554	K554E	K734E	nonsyn	Aaa	Gaa	339	339	1	2465-2467
ORF1ab/nsp2	554	K554K	K734K	syn	aaA	aaG	205	205	1	2465-2467
ORF1ab/nsp2	554	K554R	K734R	nonsyn	aAa	aGa	167	166	0.994012	2465-2467
ORF1ab/nsp2	554	K554R	K734R	nonsyn	AAa	CGa	167	1	0.00598802	2465-2467
ORF1ab/nsp2	554	K554N	K734N	nonsyn	aaA	aaC	139	110	0.791367	2465-2467
ORF1ab/nsp2	554	K554N	K734N	nonsyn	aaA	aaT	139	29	0.208633	2465-2467
ORF1ab/nsp2	554	K554del	K734del	del	AAA	---	74	74	1	2465-2467
ORF1ab/nsp2	554	K554Q	K734Q	nonsyn	Aaa	Caa	53	51	0.962264	2465-2467
ORF1ab/nsp2	554	K554Q	K734Q	nonsyn	AaA	CaG	53	2	0.0377358	2465-2467
ORF1ab/nsp2	554	K554T	K734T	nonsyn	aAa	aCa	52	52	1	2465-2467
ORF1ab/nsp2	554	K554I	K734I	nonsyn	aAa	aTa	14	14	1	2465-2467
ORF1ab/nsp2	554	K554del1	K734del1	del	Aaa	-aa	8	7	0.875	2465-2467
ORF1ab/nsp2	554	K554del1	K734del1	del	aaA	aa-	8	1	0.125	2465-2467
ORF1ab/nsp2	554	K554X	K734X	nonsyn	Aaa	Taa	5	3	0.6	2465-2467
ORF1ab/nsp2	554	K554X	K734X	nonsyn	AAa	TGa	5	1	0.2	2465-2467
ORF1ab/nsp2	554	K554X	K734X	nonsyn	AaA	TaG	5	1	0.2	2465-2467
ORF1ab/nsp2	554	K554P	K734P	nonsyn	AAa	CCa	2	2	1	2465-2467
ORF1ab/nsp2	554	K554G	K734G	nonsyn	AAA	GGT	1	1	1	2465-2467
ORF1ab/nsp2	554	K554H	K734H	nonsyn	AaA	CaT	1	1	1	2465-2467
ORF1ab/nsp2	554	K554Y	K734Y	nonsyn	AaA	TaT	1	1	1	2465-2467
ORF1ab/nsp2	554	K554del2	K734del2	del	aAA	a--	1	1	1	2465-2467
ORF1ab/nsp2	554	K554L	K734L	nonsyn	AAA	CTT	1	1	1	2465-2467

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp2	554	K554E	Aaa	Gaa	339	339	All	0.000065
ORF1ab/nsp2	554	K554K	aaA	aaG	205	205	All	0.000039
ORF1ab/nsp2	554	K554R	aAa	aGa	166	167	All	0.000032
ORF1ab/nsp2	554	K554R	AAa	CGa	1	167	All	0
ORF1ab/nsp2	554	K554N	aaA	aaC	110	139	All	0.000021
ORF1ab/nsp2	554	K554N	aaA	aaT	29	139	All	0.000006
ORF1ab/nsp2	554	K554E	Aaa	Gaa	111	111	AY.94	0.049137
ORF1ab/nsp2	554	K554E	Aaa	Gaa	90	90	B.1.1.7	0.000081
ORF1ab/nsp2	554	K554del	AAA	---	74	74	All	0.000014
ORF1ab/nsp2	554	K554R	aAa	aGa	62	62	B.1.444	0.984127
ORF1ab/nsp2	554	K554Q	Aaa	Caa	51	53	All	0.00001
ORF1ab/nsp2	554	K554Q	AaA	CaG	2	53	All	0
ORF1ab/nsp2	554	K554T	aAa	aCa	52	52	All	0.00001
ORF1ab/nsp2	554	K554K	aaA	aaG	44	44	B.1.1.7	0.000039
ORF1ab/nsp2	554	K554K	aaA	aaG	40	40	AY.4	0.000062
ORF1ab/nsp2	554	K554E	Aaa	Gaa	39	39	B.1.429	0.000918
ORF1ab/nsp2	554	K554T	aAa	aCa	34	34	B.1.1.7	0.00003
ORF1ab/nsp2	554	K554N	aaA	aaC	31	31	B.1.177.37	0.837838
ORF1ab/nsp2	554	K554N	aaA	aaC	27	27	AY.113	0.003845
ORF1ab/nsp2	554	K554R	aAa	aGa	24	25	B.1.1.7	0.000021
ORF1ab/nsp2	554	K554R	AAa	CGa	1	25	B.1.1.7	0.000001
ORF1ab/nsp2	554	K554E	Aaa	Gaa	24	24	AY.103	0.000149
ORF1ab/nsp2	554	K554N	aaA	aaC	14	19	B.1.1.7	0.000013
ORF1ab/nsp2	554	K554N	aaA	aaT	5	19	B.1.1.7	0.000004
ORF1ab/nsp2	554	K554E	Aaa	Gaa	18	18	B.1.478	0.211765
ORF1ab/nsp2	554	K554R	aAa	aGa	17	17	B.1	0.000156
ORF1ab/nsp2	554	K554del	AAA	---	16	16	B.1.1.7	0.000014
ORF1ab/nsp2	554	K554I	aAa	aTa	14	14	All	0.000003
ORF1ab/nsp2	554	K554Q	Aaa	Caa	13	13	B.1.617.2	0.000049
ORF1ab/nsp2	554	K554K	aaA	aaG	12	12	B.1.258	0.000799
ORF1ab/nsp2	554	K554R	aAa	aGa	11	11	AY.117	0.00093
ORF1ab/nsp2	554	K554N	aaA	aaC	8	10	AY.3	0.00008
ORF1ab/nsp2	554	K554N	aaA	aaT	2	10	AY.3	0.00002
ORF1ab/nsp2	554	K554R	aAa	aGa	9	9	AY.4	0.000014
ORF1ab/nsp2	554	K554K	aaA	aaG	9	9	B.1.526	0.000212
ORF1ab/nsp2	554	K554E	Aaa	Gaa	9	9	P.1.14	0.00043
ORF1ab/nsp2	554	K554del1	Aaa	-aa	7	8	All	0.000001
ORF1ab/nsp2	554	K554del1	aaA	aa-	1	8	All	0
ORF1ab/nsp2	554	K554Q	Aaa	Caa	8	8	AY.25	0.000048
ORF1ab/nsp2	554	K554K	aaA	aaG	8	8	AY.54	0.000763
ORF1ab/nsp2	554	K554del	AAA	---	7	7	B.1	0.000064
ORF1ab/nsp2	554	K554Q	Aaa	Caa	7	7	B.1.1.7	0.000006
ORF1ab/nsp2	554	K554K	aaA	aaG	7	7	B.1.2	0.000062
ORF1ab/nsp2	554	K554K	aaA	aaG	7	7	B.1.429	0.000165
ORF1ab/nsp2	554	K554E	Aaa	Gaa	7	7	P.1	0.00011
ORF1ab/nsp2	554	K554K	aaA	aaG	6	6	AY.25	0.000036
ORF1ab/nsp2	554	K554X	Aaa	Taa	3	5	All	0.000001
ORF1ab/nsp2	554	K554X	AAa	TGa	1	5	All	0
ORF1ab/nsp2	554	K554X	AaA	TaG	1	5	All	0
ORF1ab/nsp2	554	K554K	aaA	aaG	5	5	AY.103	0.000031
ORF1ab/nsp2	554	K554E	Aaa	Gaa	5	5	AY.4	0.000008
ORF1ab/nsp2	554	K554N	aaA	aaT	3	5	AY.43	0.000013
ORF1ab/nsp2	554	K554N	aaA	aaC	2	5	AY.43	0.000009
ORF1ab/nsp2	554	K554R	aAa	aGa	5	5	B.1.177.20	0.007587
ORF1ab/nsp2	554	K554K	aaA	aaG	5	5	B.1.617.2	0.000019
ORF1ab/nsp2	554	K554del	AAA	---	4	4		0.222222
ORF1ab/nsp2	554	K554Q	Aaa	Caa	4	4	AY.102	0.000106
ORF1ab/nsp2	554	K554T	aAa	aCa	4	4	AY.103	0.000025
ORF1ab/nsp2	554	K554N	aaA	aaC	3	4	AY.25	0.000018
ORF1ab/nsp2	554	K554N	aaA	aaT	1	4	AY.25	0.000006
ORF1ab/nsp2	554	K554K	aaA	aaG	4	4	AY.3	0.00004
ORF1ab/nsp2	554	K554E	Aaa	Gaa	4	4	AY.32	0.00213
ORF1ab/nsp2	554	K554R	aAa	aGa	4	4	AY.33	0.000267
ORF1ab/nsp2	554	K554N	aaA	aaC	3	4	AY.44	0.000018
ORF1ab/nsp2	554	K554N	aaA	aaT	1	4	AY.44	0.000006
ORF1ab/nsp2	554	K554K	aaA	aaG	4	4	B.1.1	0.000073
ORF1ab/nsp2	554	K554K	aaA	aaG	4	4	B.1.1.526	0.014184
ORF1ab/nsp2	554	K554I	aAa	aTa	4	4	B.1.1.7	0.000004
ORF1ab/nsp2	554	K554K	aaA	aaG	3	3	AY.100	0.000138
ORF1ab/nsp2	554	K554K	aaA	aaG	3	3	AY.102	0.00008
ORF1ab/nsp2	554	K554E	Aaa	Gaa	3	3	AY.25	0.000018
ORF1ab/nsp2	554	K554N	aaA	aaC	3	3	AY.26	0.000085
ORF1ab/nsp2	554	K554K	aaA	aaG	3	3	AY.36	0.000445
ORF1ab/nsp2	554	K554del	AAA	---	3	3	AY.4	0.000005
ORF1ab/nsp2	554	K554K	aaA	aaG	3	3	AY.43	0.000013
ORF1ab/nsp2	554	K554K	aaA	aaG	3	3	AY.71	0.001425
ORF1ab/nsp2	554	K554K	aaA	aaG	3	3	B.1	0.000027
ORF1ab/nsp2	554	K554R	aAa	aGa	3	3	B.1.1	0.000054
ORF1ab/nsp2	554	K554del	AAA	---	3	3	B.1.1	0.000054
ORF1ab/nsp2	554	K554R	aAa	aGa	3	3	B.1.1.319	0.052632
ORF1ab/nsp2	554	K554del	AAA	---	3	3	B.1.1.33	0.001263
ORF1ab/nsp2	554	K554R	aAa	aGa	3	3	B.1.119	0.031579
ORF1ab/nsp2	554	K554N	aaA	aaT	2	3	B.1.177	0.000026
ORF1ab/nsp2	554	K554N	aaA	aaC	1	3	B.1.177	0.000013
ORF1ab/nsp2	554	K554R	aAa	aGa	3	3	B.1.177.45	0.001144
ORF1ab/nsp2	554	K554R	aAa	aGa	3	3	B.1.554	0.013216
ORF1ab/nsp2	554	K554R	aAa	aGa	3	3	B.1.617.2	0.000011
ORF1ab/nsp2	554	K554del	AAA	---	3	3	B.1.617.2	0.000011
ORF1ab/nsp2	554	K554N	aaA	aaT	2	3	B.1.617.2	0.000008
ORF1ab/nsp2	554	K554N	aaA	aaC	1	3	B.1.617.2	0.000004
ORF1ab/nsp2	554	K554R	aAa	aGa	3	3	P.1	0.000047
ORF1ab/nsp2	554	K554P	AAa	CCa	2	2		0.111111
ORF1ab/nsp2	554	K554P	AAa	CCa	2	2	All	0
ORF1ab/nsp2	554	K554E	Aaa	Gaa	2	2	AY.111	0.000366
ORF1ab/nsp2	554	K554R	aAa	aGa	2	2	AY.119	0.000071
ORF1ab/nsp2	554	K554del	AAA	---	2	2	AY.25	0.000012
ORF1ab/nsp2	554	K554Q	Aaa	Caa	2	2	AY.29	0.000032
ORF1ab/nsp2	554	K554E	Aaa	Gaa	2	2	AY.3	0.00002
ORF1ab/nsp2	554	K554K	aaA	aaG	2	2	AY.3.1	0.000171
ORF1ab/nsp2	554	K554Q	Aaa	Caa	2	2	AY.39	0.000049
ORF1ab/nsp2	554	K554T	aAa	aCa	2	2	AY.4	0.000003
ORF1ab/nsp2	554	K554Q	Aaa	Caa	2	2	AY.4	0.000003
ORF1ab/nsp2	554	K554N	aaA	aaT	2	2	AY.4.2	0.000043
ORF1ab/nsp2	554	K554E	Aaa	Gaa	2	2	AY.43	0.000009
ORF1ab/nsp2	554	K554del	AAA	---	2	2	AY.43	0.000009
ORF1ab/nsp2	554	K554Q	Aaa	Caa	2	2	AY.44	0.000012
ORF1ab/nsp2	554	K554K	aaA	aaG	2	2	AY.44	0.000012
ORF1ab/nsp2	554	K554del	AAA	---	2	2	AY.46.6	0.000144
ORF1ab/nsp2	554	K554E	Aaa	Gaa	2	2	AY.51	0.001818
ORF1ab/nsp2	554	K554Q	Aaa	Caa	2	2	AY.57	0.001312
ORF1ab/nsp2	554	K554Q	Aaa	Caa	2	2	B.1	0.000018
ORF1ab/nsp2	554	K554T	aAa	aCa	2	2	B.1	0.000018
ORF1ab/nsp2	554	K554E	Aaa	Gaa	2	2	B.1	0.000018
ORF1ab/nsp2	554	K554N	aaA	aaT	1	2	B.1	0.000009
ORF1ab/nsp2	554	K554N	aaA	aaC	1	2	B.1	0.000009
ORF1ab/nsp2	554	K554X	AaA	TaG	1	2	B.1.1	0.000018
ORF1ab/nsp2	554	K554X	Aaa	Taa	1	2	B.1.1	0.000018
ORF1ab/nsp2	554	K554Q	Aaa	Caa	1	2	B.1.1	0.000018
ORF1ab/nsp2	554	K554Q	AaA	CaG	1	2	B.1.1	0.000018
ORF1ab/nsp2	554	K554N	aaA	aaT	2	2	B.1.1.176	0.000879
ORF1ab/nsp2	554	K554del	AAA	---	2	2	B.1.1.348	0.001592
ORF1ab/nsp2	554	K554K	aaA	aaG	2	2	B.1.1.519	0.000079
ORF1ab/nsp2	554	K554I	aAa	aTa	2	2	B.1.177.73	0.001133
ORF1ab/nsp2	554	K554N	aaA	aaT	2	2	B.1.258	0.000133
ORF1ab/nsp2	554	K554N	aaA	aaC	2	2	B.1.351	0.000059
ORF1ab/nsp2	554	K554K	aaA	aaG	2	2	B.1.351	0.000059
ORF1ab/nsp2	554	K554del	AAA	---	2	2	B.1.424	0.016129
ORF1ab/nsp2	554	K554del	AAA	---	2	2	B.1.429	0.000047
ORF1ab/nsp2	554	K554del	AAA	---	2	2	N.6	0.014184
ORF1ab/nsp2	554	K554N	aaA	aaC	2	2	P.1.14	0.000096
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	A.23	0.010526
ORF1ab/nsp2	554	K554G	AAA	GGT	1	1	All	0
ORF1ab/nsp2	554	K554del2	aAA	a--	1	1	All	0
ORF1ab/nsp2	554	K554Y	AaA	TaT	1	1	All	0
ORF1ab/nsp2	554	K554H	AaA	CaT	1	1	All	0
ORF1ab/nsp2	554	K554L	AAA	CTT	1	1	All	0
ORF1ab/nsp2	554	K554Q	Aaa	Caa	1	1	AY.100	0.000046
ORF1ab/nsp2	554	K554R	aAa	aGa	1	1	AY.102	0.000027
ORF1ab/nsp2	554	K554I	aAa	aTa	1	1	AY.102	0.000027
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	AY.102	0.000027
ORF1ab/nsp2	554	K554Q	Aaa	Caa	1	1	AY.103	0.000006
ORF1ab/nsp2	554	K554R	aAa	aGa	1	1	AY.103	0.000006
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	AY.103	0.000006
ORF1ab/nsp2	554	K554del	AAA	---	1	1	AY.108	0.001103
ORF1ab/nsp2	554	K554R	aAa	aGa	1	1	AY.113	0.000142
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	AY.113	0.000142
ORF1ab/nsp2	554	K554del	AAA	---	1	1	AY.113	0.000142
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	AY.116	0.000287
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	AY.119	0.000035
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	AY.119	0.000035
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	AY.16	0.00038
ORF1ab/nsp2	554	K554Q	Aaa	Caa	1	1	AY.23	0.00007
ORF1ab/nsp2	554	K554del1	Aaa	-aa	1	1	AY.23	0.00007
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	AY.24	0.000431
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	AY.26	0.000028
ORF1ab/nsp2	554	K554del1	Aaa	-aa	1	1	AY.26	0.000028
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	AY.29	0.000016
ORF1ab/nsp2	554	K554T	aAa	aCa	1	1	AY.3	0.00001
ORF1ab/nsp2	554	K554R	aAa	aGa	1	1	AY.3	0.00001
ORF1ab/nsp2	554	K554Q	Aaa	Caa	1	1	AY.3	0.00001
ORF1ab/nsp2	554	K554del	AAA	---	1	1	AY.3	0.00001
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	AY.33	0.000067
ORF1ab/nsp2	554	K554X	Aaa	Taa	1	1	AY.33	0.000067
ORF1ab/nsp2	554	K554N	aaA	aaT	1	1	AY.34	0.000097
ORF1ab/nsp2	554	K554N	aaA	aaT	1	1	AY.4	0.000002
ORF1ab/nsp2	554	K554del2	aAA	a--	1	1	AY.4	0.000002
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	AY.4.2	0.000022
ORF1ab/nsp2	554	K554del	AAA	---	1	1	AY.42	0.00004
ORF1ab/nsp2	554	K554T	aAa	aCa	1	1	AY.42	0.00004
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	AY.42	0.00004
ORF1ab/nsp2	554	K554R	aAa	aGa	1	1	AY.43	0.000004
ORF1ab/nsp2	554	K554R	aAa	aGa	1	1	AY.44	0.000006
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	AY.45	0.000122
ORF1ab/nsp2	554	K554R	aAa	aGa	1	1	AY.45	0.000122
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	AY.46	0.000104
ORF1ab/nsp2	554	K554N	aaA	aaT	1	1	AY.46	0.000104
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	AY.47	0.000031
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	AY.5	0.000021
ORF1ab/nsp2	554	K554T	aAa	aCa	1	1	AY.54	0.000095
ORF1ab/nsp2	554	K554T	aAa	aCa	1	1	AY.6	0.000041
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	AY.69	0.000187
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	AY.79	0.001211
ORF1ab/nsp2	554	K554del	AAA	---	1	1	AY.84	0.000437
ORF1ab/nsp2	554	K554N	aaA	aaT	1	1	AY.9.2	0.000037
ORF1ab/nsp2	554	K554del	AAA	---	1	1	AY.9.2	0.000037
ORF1ab/nsp2	554	K554I	aAa	aTa	1	1	AY.92	0.000287
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	AY.93	0.000273
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	AY.98.1	0.000048
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	AY.98.1	0.000048
ORF1ab/nsp2	554	K554del	AAA	---	1	1	AY.99	0.001049
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	AY.99.2	0.000092
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	AZ.1	0.000867
ORF1ab/nsp2	554	K554G	AAA	GGT	1	1	B	0.000128
ORF1ab/nsp2	554	K554del1	Aaa	-aa	1	1	B.1	0.000009
ORF1ab/nsp2	554	K554X	Aaa	Taa	1	1	B.1	0.000009
ORF1ab/nsp2	554	K554I	aAa	aTa	1	1	B.1	0.000009
ORF1ab/nsp2	554	K554H	AaA	CaT	1	1	B.1.1	0.000018
ORF1ab/nsp2	554	K554Y	AaA	TaT	1	1	B.1.1	0.000018
ORF1ab/nsp2	554	K554T	aAa	aCa	1	1	B.1.1	0.000018
ORF1ab/nsp2	554	K554L	AAA	CTT	1	1	B.1.1	0.000018
ORF1ab/nsp2	554	K554N	aaA	aaT	1	1	B.1.1	0.000018
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	B.1.1	0.000018
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	B.1.1.157	0.000913
ORF1ab/nsp2	554	K554del1	Aaa	-aa	1	1	B.1.1.226	0.005814
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.1.265	0.003155
ORF1ab/nsp2	554	K554del1	Aaa	-aa	1	1	B.1.1.363	0.005988
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.1.1.416	0.000905
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp2	554	K554X	AAa	TGa	1	1	B.1.1.7	0.000001
ORF1ab/nsp2	554	K554T	aAa	aCa	1	1	B.1.160	0.000031
ORF1ab/nsp2	554	K554T	aAa	aCa	1	1	B.1.160.22	0.006757
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.1.177	0.000013
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.177	0.000013
ORF1ab/nsp2	554	K554R	aAa	aGa	1	1	B.1.177	0.000013
ORF1ab/nsp2	554	K554I	aAa	aTa	1	1	B.1.177	0.000013
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.177.15	0.000631
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	B.1.177.21	0.000076
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	B.1.177.26	0.006993
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp2	554	K554del1	aaA	aa-	1	1	B.1.177.57	0.000281
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	B.1.177.75	0.001041
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.1.179	0.003759
ORF1ab/nsp2	554	K554I	aAa	aTa	1	1	B.1.2	0.000009
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.221.1	0.002907
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.232	0.000537
ORF1ab/nsp2	554	K554T	aAa	aCa	1	1	B.1.234	0.000132
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	B.1.243	0.00007
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	B.1.340	0.004292
ORF1ab/nsp2	554	K554T	aAa	aCa	1	1	B.1.351	0.00003
ORF1ab/nsp2	554	K554R	aAa	aGa	1	1	B.1.351	0.00003
ORF1ab/nsp2	554	K554I	aAa	aTa	1	1	B.1.351	0.00003
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.351.5	0.0006
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.36.1	0.00114
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.1.36.18	0.00042
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.367	0.000792
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.369	0.000285
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	B.1.396	0.000706
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.427	0.00005
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	B.1.427	0.00005
ORF1ab/nsp2	554	K554T	aAa	aCa	1	1	B.1.525	0.000113
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.525	0.000113
ORF1ab/nsp2	554	K554I	aAa	aTa	1	1	B.1.526	0.000024
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.1.561	0.000397
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.1.564	0.000426
ORF1ab/nsp2	554	K554del1	Aaa	-aa	1	1	B.1.595	0.000261
ORF1ab/nsp2	554	K554R	aAa	aGa	1	1	B.1.595.4	0.007299
ORF1ab/nsp2	554	K554N	aaA	aaT	1	1	B.1.609	0.000479
ORF1ab/nsp2	554	K554R	aAa	aGa	1	1	B.1.617.1	0.000129
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	B.1.617.1	0.000129
ORF1ab/nsp2	554	K554Q	AaA	CaG	1	1	B.1.617.1	0.000129
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	554	K554I	aAa	aTa	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.1.617.3	0.002985
ORF1ab/nsp2	554	K554Q	Aaa	Caa	1	1	B.1.621	0.000089
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.1.621	0.000089
ORF1ab/nsp2	554	K554del1	Aaa	-aa	1	1	B.1.627	0.00202
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.34	0.013699
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	B.40	0.000364
ORF1ab/nsp2	554	K554del	AAA	---	1	1	B.57	0.015152
ORF1ab/nsp2	554	K554Q	Aaa	Caa	1	1	C.37	0.000116
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	C.37	0.000116
ORF1ab/nsp2	554	K554E	Aaa	Gaa	1	1	C.37	0.000116
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	P.1	0.000016
ORF1ab/nsp2	554	K554K	aaA	aaG	1	1	P.1	0.000016
ORF1ab/nsp2	554	K554del	AAA	---	1	1	P.1	0.000016
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	P.1.10	0.000269
ORF1ab/nsp2	554	K554del	AAA	---	1	1	P.2	0.000187
ORF1ab/nsp2	554	K554N	aaA	aaC	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.