CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 534

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2534K534KK714KsynaaGaaA4756475612405-2407
ORF1ab/nsp2534K534RK714RnonsynaAgaGg189818950.9984192405-2407
ORF1ab/nsp2534K534RK714RnonsynAAGCGT189830.001580612405-2407
ORF1ab/nsp2534K534NK714NnonsynaaGaaT4033880.9627792405-2407
ORF1ab/nsp2534K534NK714NnonsynaaGaaC403150.03722082405-2407
ORF1ab/nsp2534K534TK714TnonsynaAgaCg808012405-2407
ORF1ab/nsp2534K534delK714deldelAAG---767612405-2407
ORF1ab/nsp2534K534MK714MnonsynaAgaTg151512405-2407
ORF1ab/nsp2534K534EK714EnonsynAagGag111112405-2407
ORF1ab/nsp2534K534del1K714del1delaaGaa-101012405-2407
ORF1ab/nsp2534K534QK714QnonsynAagCag760.8571432405-2407
ORF1ab/nsp2534K534QK714QnonsynAaGCaA710.1428572405-2407
ORF1ab/nsp2534K534XK714XnonsynAagTag5512405-2407
ORF1ab/nsp2534K534SK714SnonsynaAGaGT4412405-2407
ORF1ab/nsp2534K534VK714VnonsynAAgGTg2212405-2407
ORF1ab/nsp2534K534LK714LnonsynAAGCTT2212405-2407
ORF1ab/nsp2534K534IK714InonsynaAGaTT2212405-2407
ORF1ab/nsp2534K534del2K714del2delaAGa--210.52405-2407
ORF1ab/nsp2534K534del2K714del2delAAg--g210.52405-2407

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2534K534KaaGaaA47564756All0.00091
ORF1ab/nsp2534K534RaAgaGg18951898All0.000362
ORF1ab/nsp2534K534RAAGCGT31898All0.000001
ORF1ab/nsp2534K534KaaGaaA15581558B.1.619.10.999359
ORF1ab/nsp2534K534RaAgaGg13591359B.1.4290.031976
ORF1ab/nsp2534K534KaaGaaA11161116B.1.6190.972125
ORF1ab/nsp2534K534KaaGaaA706706AY.1200.026248
ORF1ab/nsp2534K534KaaGaaA416416AY.40.000647
ORF1ab/nsp2534K534NaaGaaT388403All0.000074
ORF1ab/nsp2534K534NaaGaaC15403All0.000003
ORF1ab/nsp2534K534RaAgaGg321321B.1.1.70.000287
ORF1ab/nsp2534K534KaaGaaA190190AY.250.001143
ORF1ab/nsp2534K534KaaGaaA137137B.1.1.70.000123
ORF1ab/nsp2534K534TaAgaCg8080All0.000015
ORF1ab/nsp2534K534delAAG---7676All0.000015
ORF1ab/nsp2534K534KaaGaaA7171B.1.617.20.000267
ORF1ab/nsp2534K534KaaGaaA5959AY.440.000359
ORF1ab/nsp2534K534KaaGaaA5858B.10.000531
ORF1ab/nsp2534K534RaAgaGg5454AY.250.000325
ORF1ab/nsp2534K534TaAgaCg5050AY.40.000078
ORF1ab/nsp2534K534KaaGaaA4646B.1.1.2940.058228
ORF1ab/nsp2534K534NaaGaaT4245B.1.617.20.000158
ORF1ab/nsp2534K534NaaGaaC345B.1.617.20.000011
ORF1ab/nsp2534K534KaaGaaA3939AY.140.003432
ORF1ab/nsp2534K534KaaGaaA3737AY.1030.00023
ORF1ab/nsp2534K534KaaGaaA3434AY.1020.000901
ORF1ab/nsp2534K534NaaGaaT3434AY.40.000053
ORF1ab/nsp2534K534NaaGaaT3334B.1.1.70.00003
ORF1ab/nsp2534K534NaaGaaC134B.1.1.70.000001
ORF1ab/nsp2534K534NaaGaaT2526B.1.2210.001776
ORF1ab/nsp2534K534NaaGaaC126B.1.2210.000071
ORF1ab/nsp2534K534NaaGaaT2626B.1.4290.000612
ORF1ab/nsp2534K534NaaGaaT2323B.1.221.10.06686
ORF1ab/nsp2534K534KaaGaaA2323B.1.351.20.006959
ORF1ab/nsp2534K534KaaGaaA1919P.1.120.009197
ORF1ab/nsp2534K534RaAgaGg1717B.10.000156
ORF1ab/nsp2534K534delAAG---1717B.1.1.70.000015
ORF1ab/nsp2534K534NaaGaaT1717P.10.000268
ORF1ab/nsp2534K534RaAgaGg1616AY.40.000025
ORF1ab/nsp2534K534NaaGaaT1516B.1.20.000132
ORF1ab/nsp2534K534NaaGaaC116B.1.20.000009
ORF1ab/nsp2534K534KaaGaaA1616B.1.6120.04244
ORF1ab/nsp2534K534MaAgaTg1515All0.000003
ORF1ab/nsp2534K534KaaGaaA1515B.1.4290.000353
ORF1ab/nsp2534K534RaAgaGg1313B.1.4270.000656
ORF1ab/nsp2534K534KaaGaaA1212AY.230.000837
ORF1ab/nsp2534K534KaaGaaA1212AY.390.000297
ORF1ab/nsp2534K534NaaGaaT1212AY.430.000053
ORF1ab/nsp2534K534NaaGaaT1012B.10.000092
ORF1ab/nsp2534K534NaaGaaC212B.10.000018
ORF1ab/nsp2534K534KaaGaaA1212B.1.20.000106
ORF1ab/nsp2534K534EAagGag1111All0.000002
ORF1ab/nsp2534K534del1aaGaa-1010All0.000002
ORF1ab/nsp2534K534NaaGaaT1010AY.46.60.000722
ORF1ab/nsp2534K534NaaGaaT1010B.1.10.000181
ORF1ab/nsp2534K534RaAgaGg1010B.1.20.000088
ORF1ab/nsp2534K534KaaGaaA1010B.1.258.170.00104
ORF1ab/nsp2534K534RaAgaGg99AY.430.00004
ORF1ab/nsp2534K534RaAgaGg99AY.440.000055
ORF1ab/nsp2534K534KaaGaaA99B.1.10.000163
ORF1ab/nsp2534K534KaaGaaA88AY.680.00219
ORF1ab/nsp2534K534RaAgaGg78B.1.617.20.000026
ORF1ab/nsp2534K534RAAGCGT18B.1.617.20.000004
ORF1ab/nsp2534K534KaaGaaA88P.10.000126
ORF1ab/nsp2534K534QAagCag67All0.000001
ORF1ab/nsp2534K534QAaGCaA17All0
ORF1ab/nsp2534K534KaaGaaA77AY.270.000453
ORF1ab/nsp2534K534KaaGaaA77AY.430.000031
ORF1ab/nsp2534K534RaAgaGg77AY.720.009524
ORF1ab/nsp2534K534delAAG---77B.10.000064
ORF1ab/nsp2534K534delAAG---660.333333
ORF1ab/nsp2534K534NaaGaaT66AY.1020.000159
ORF1ab/nsp2534K534KaaGaaA66AY.1190.000212
ORF1ab/nsp2534K534MaAgaTg66AY.40.000009
ORF1ab/nsp2534K534KaaGaaA66AY.420.000241
ORF1ab/nsp2534K534NaaGaaT66AY.440.000037
ORF1ab/nsp2534K534NaaGaaT66B.1.2400.001293
ORF1ab/nsp2534K534RaAgaGg66B.1.5260.000141
ORF1ab/nsp2534K534KaaGaaA66C.160.006363
ORF1ab/nsp2534K534RaAgaGg66P.10.000095
ORF1ab/nsp2534K534XAagTag55All0.000001
ORF1ab/nsp2534K534NaaGaaT55AY.1030.000031
ORF1ab/nsp2534K534NaaGaaT55AY.250.00003
ORF1ab/nsp2534K534NaaGaaT45AY.30.00004
ORF1ab/nsp2534K534NaaGaaC15AY.30.00001
ORF1ab/nsp2534K534KaaGaaA55AY.50.000103
ORF1ab/nsp2534K534TaAgaCg55B.1.1770.000066
ORF1ab/nsp2534K534KaaGaaA55B.1.5260.000118
ORF1ab/nsp2534K534SaAGaGT44All0.000001
ORF1ab/nsp2534K534NaaGaaT44AY.260.000113
ORF1ab/nsp2534K534NaaGaaT44AY.420.000161
ORF1ab/nsp2534K534KaaGaaA44AY.9.10.000335
ORF1ab/nsp2534K534KaaGaaA44B0.000511
ORF1ab/nsp2534K534TaAgaCg44B.10.000037
ORF1ab/nsp2534K534KaaGaaA44B.1.1600.000125
ORF1ab/nsp2534K534NaaGaaC34B.1.1770.00004
ORF1ab/nsp2534K534NaaGaaT14B.1.1770.000013
ORF1ab/nsp2534K534RaAgaGg44B.1.3240.006421
ORF1ab/nsp2534K534NaaGaaT44B.1.36.10.004561
ORF1ab/nsp2534K534NaaGaaC24D.20.00015
ORF1ab/nsp2534K534NaaGaaT24D.20.00015
ORF1ab/nsp2534K534TaAgaCg44P.10.000063
ORF1ab/nsp2534K534NaaGaaT33AY.10.001187
ORF1ab/nsp2534K534NaaGaaT33AY.1000.000138
ORF1ab/nsp2534K534RaAgaGg33AY.1030.000019
ORF1ab/nsp2534K534NaaGaaT33AY.4.20.000065
ORF1ab/nsp2534K534delAAG---33AY.430.000013
ORF1ab/nsp2534K534NaaGaaT33AY.50.000062
ORF1ab/nsp2534K534KaaGaaA33AY.710.001425
ORF1ab/nsp2534K534NaaGaaT33AY.960.006224
ORF1ab/nsp2534K534KaaGaaA33AY.980.000237
ORF1ab/nsp2534K534RaAgaGg33B0.000383
ORF1ab/nsp2534K534delAAG---33B.1.10.000054
ORF1ab/nsp2534K534RaAgaGg33B.1.10.000054
ORF1ab/nsp2534K534delAAG---33B.1.1.330.001263
ORF1ab/nsp2534K534TaAgaCg33B.1.1.3480.002389
ORF1ab/nsp2534K534QAagCag33B.1.1.70.000003
ORF1ab/nsp2534K534NaaGaaT33B.1.1600.000094
ORF1ab/nsp2534K534NaaGaaT33B.1.177.210.000229
ORF1ab/nsp2534K534RaAgaGg33B.1.2580.0002
ORF1ab/nsp2534K534RaAgaGg33B.1.5960.000261
ORF1ab/nsp2534K534RaAgaGg33B.1.6090.001438
ORF1ab/nsp2534K534KaaGaaA33B.1.617.10.000387
ORF1ab/nsp2534K534KaaGaaA33B.1.6210.000266
ORF1ab/nsp2534K534RAAGCGT220.111111
ORF1ab/nsp2534K534LAAGCTT220.111111
ORF1ab/nsp2534K534IaAGaTT220.111111
ORF1ab/nsp2534K534SaAGaGT220.111111
ORF1ab/nsp2534K534IaAGaTT22All0
ORF1ab/nsp2534K534LAAGCTT22All0
ORF1ab/nsp2534K534VAAgGTg22All0
ORF1ab/nsp2534K534del2AAg--g12All0
ORF1ab/nsp2534K534del2aAGa--12All0
ORF1ab/nsp2534K534KaaGaaA22AY.1130.000285
ORF1ab/nsp2534K534KaaGaaA22AY.120.20.002571
ORF1ab/nsp2534K534TaAgaCg22AY.250.000012
ORF1ab/nsp2534K534KaaGaaA22AY.260.000057
ORF1ab/nsp2534K534NaaGaaT22AY.290.000032
ORF1ab/nsp2534K534RaAgaGg22AY.290.000032
ORF1ab/nsp2534K534EAagGag22AY.30.00002
ORF1ab/nsp2534K534KaaGaaA22AY.30.00002
ORF1ab/nsp2534K534KaaGaaA22AY.320.001065
ORF1ab/nsp2534K534NaaGaaT22AY.390.000049
ORF1ab/nsp2534K534delAAG---22AY.40.000003
ORF1ab/nsp2534K534KaaGaaA22AY.550.001835
ORF1ab/nsp2534K534KaaGaaA22AY.60.000082
ORF1ab/nsp2534K534KaaGaaA22AY.650.001066
ORF1ab/nsp2534K534NaaGaaT22AY.7.10.000225
ORF1ab/nsp2534K534KaaGaaA22AY.9.20.000073
ORF1ab/nsp2534K534del1aaGaa-22B.10.000018
ORF1ab/nsp2534K534NaaGaaT22B.1.1.1280.014184
ORF1ab/nsp2534K534KaaGaaA22B.1.1.330.000842
ORF1ab/nsp2534K534delAAG---22B.1.1.3480.001592
ORF1ab/nsp2534K534NaaGaaT22B.1.1.370.000386
ORF1ab/nsp2534K534NaaGaaT22B.1.1.5190.000079
ORF1ab/nsp2534K534del1aaGaa-22B.1.1.70.000002
ORF1ab/nsp2534K534EAagGag22B.1.1.70.000002
ORF1ab/nsp2534K534TaAgaCg22B.1.1.70.000002
ORF1ab/nsp2534K534KaaGaaA22B.1.1770.000026
ORF1ab/nsp2534K534KaaGaaA22B.1.177.120.000303
ORF1ab/nsp2534K534RaAgaGg22B.1.177.190.002861
ORF1ab/nsp2534K534KaaGaaA22B.1.177.600.000437
ORF1ab/nsp2534K534TaAgaCg22B.1.220.002635
ORF1ab/nsp2534K534RaAgaGg22B.1.2210.000142
ORF1ab/nsp2534K534RaAgaGg22B.1.3510.000059
ORF1ab/nsp2534K534KaaGaaA22B.1.3510.000059
ORF1ab/nsp2534K534NaaGaaT22B.1.360.000292
ORF1ab/nsp2534K534KaaGaaA22B.1.36.180.00084
ORF1ab/nsp2534K534NaaGaaT22B.1.36.80.002
ORF1ab/nsp2534K534KaaGaaA22B.1.36.80.002
ORF1ab/nsp2534K534delAAG---22B.1.4240.016129
ORF1ab/nsp2534K534delAAG---22B.1.4290.000047
ORF1ab/nsp2534K534NaaGaaT22B.1.5170.000854
ORF1ab/nsp2534K534delAAG---22B.1.617.10.000258
ORF1ab/nsp2534K534SaAGaGT22B.1.617.20.000008
ORF1ab/nsp2534K534MaAgaTg22B.1.617.20.000008
ORF1ab/nsp2534K534NaaGaaT22C.36.30.001134
ORF1ab/nsp2534K534RaAgaGg22C.390.037736
ORF1ab/nsp2534K534RaAgaGg22D.20.00015
ORF1ab/nsp2534K534delAAG---22N.60.014184
ORF1ab/nsp2534K534delAAG---22P.10.000032
ORF1ab/nsp2534K534KaaGaaA22P.1.150.000465
ORF1ab/nsp2534K534TaAgaCg22P.1.170.000324
ORF1ab/nsp2534K534KaaGaaA22P.1.20.002312
ORF1ab/nsp2534K534KaaGaaA22R.10.00018
ORF1ab/nsp2534K534NaaGaaT22R.10.00018
ORF1ab/nsp2534K534NaaGaaT11A.10.000282
ORF1ab/nsp2534K534TaAgaCg11A.2.40.003367
ORF1ab/nsp2534K534RaAgaGg11A.2.50.000499
ORF1ab/nsp2534K534KaaGaaA11A.210.00277
ORF1ab/nsp2534K534RaAgaGg11AY.10.000396
ORF1ab/nsp2534K534NaaGaaT11AY.1060.000335
ORF1ab/nsp2534K534delAAG---11AY.1080.001103
ORF1ab/nsp2534K534delAAG---11AY.1130.000142
ORF1ab/nsp2534K534delAAG---11AY.1170.000085
ORF1ab/nsp2534K534RaAgaGg11AY.1190.000035
ORF1ab/nsp2534K534NaaGaaT11AY.1200.000037
ORF1ab/nsp2534K534del1aaGaa-11AY.120.10.000321
ORF1ab/nsp2534K534KaaGaaA11AY.16.10.00047
ORF1ab/nsp2534K534MaAgaTg11AY.16.10.00047
ORF1ab/nsp2534K534KaaGaaA11AY.190.00114
ORF1ab/nsp2534K534KaaGaaA11AY.200.000039
ORF1ab/nsp2534K534RaAgaGg11AY.230.00007
ORF1ab/nsp2534K534NaaGaaT11AY.270.000065
ORF1ab/nsp2534K534RaAgaGg11AY.280.00189
ORF1ab/nsp2534K534EAagGag11AY.290.000016
ORF1ab/nsp2534K534TaAgaCg11AY.290.000016
ORF1ab/nsp2534K534delAAG---11AY.29.10.000221
ORF1ab/nsp2534K534RaAgaGg11AY.30.00001
ORF1ab/nsp2534K534RaAgaGg11AY.320.000532
ORF1ab/nsp2534K534NaaGaaT11AY.330.000067
ORF1ab/nsp2534K534KaaGaaA11AY.330.000067
ORF1ab/nsp2534K534NaaGaaT11AY.340.000097
ORF1ab/nsp2534K534KaaGaaA11AY.350.000233
ORF1ab/nsp2534K534KaaGaaA11AY.360.000148
ORF1ab/nsp2534K534NaaGaaT11AY.39.10.00004
ORF1ab/nsp2534K534KaaGaaA11AY.39.10.00004
ORF1ab/nsp2534K534EAagGag11AY.40.000002
ORF1ab/nsp2534K534QAaGCaA11AY.420.00004
ORF1ab/nsp2534K534MaAgaTg11AY.430.000004
ORF1ab/nsp2534K534EAagGag11AY.430.000004
ORF1ab/nsp2534K534delAAG---11AY.440.000006
ORF1ab/nsp2534K534NaaGaaT11AY.460.000104
ORF1ab/nsp2534K534MaAgaTg11AY.460.000104
ORF1ab/nsp2534K534NaaGaaT11AY.46.20.000635
ORF1ab/nsp2534K534delAAG---11AY.46.60.000072
ORF1ab/nsp2534K534NaaGaaT11AY.470.000031
ORF1ab/nsp2534K534RaAgaGg11AY.50.000021
ORF1ab/nsp2534K534KaaGaaA11AY.5.30.000337
ORF1ab/nsp2534K534NaaGaaT11AY.520.000814
ORF1ab/nsp2534K534KaaGaaA11AY.540.000095
ORF1ab/nsp2534K534NaaGaaT11AY.60.000041
ORF1ab/nsp2534K534RaAgaGg11AY.60.000041
ORF1ab/nsp2534K534NaaGaaT11AY.610.000105
ORF1ab/nsp2534K534delAAG---11AY.620.000436
ORF1ab/nsp2534K534NaaGaaT11AY.680.000274
ORF1ab/nsp2534K534KaaGaaA11AY.690.000187
ORF1ab/nsp2534K534NaaGaaT11AY.730.000665
ORF1ab/nsp2534K534KaaGaaA11AY.750.000056
ORF1ab/nsp2534K534delAAG---11AY.750.000056
ORF1ab/nsp2534K534KaaGaaA11AY.790.001211
ORF1ab/nsp2534K534KaaGaaA11AY.840.000437
ORF1ab/nsp2534K534delAAG---11AY.840.000437
ORF1ab/nsp2534K534NaaGaaT11AY.90.000068
ORF1ab/nsp2534K534QAagCag11AY.90.000068
ORF1ab/nsp2534K534EAagGag11AY.9.20.000037
ORF1ab/nsp2534K534NaaGaaT11AY.9.20.000037
ORF1ab/nsp2534K534RaAgaGg11AY.900.000684
ORF1ab/nsp2534K534NaaGaaT11AY.940.000443
ORF1ab/nsp2534K534NaaGaaT11AY.980.000079
ORF1ab/nsp2534K534KaaGaaA11AY.98.10.000048
ORF1ab/nsp2534K534delAAG---11AY.98.10.000048
ORF1ab/nsp2534K534NaaGaaT11AY.98.10.000048
ORF1ab/nsp2534K534delAAG---11AY.990.001049
ORF1ab/nsp2534K534KaaGaaA11AZ.10.000867
ORF1ab/nsp2534K534NaaGaaT11AZ.20.000821
ORF1ab/nsp2534K534del1aaGaa-11B0.000128
ORF1ab/nsp2534K534delAAG---11B0.000128
ORF1ab/nsp2534K534EAagGag11B.10.000009
ORF1ab/nsp2534K534XAagTag11B.10.000009
ORF1ab/nsp2534K534XAagTag11B.1.10.000018
ORF1ab/nsp2534K534NaaGaaT11B.1.1.10.000327
ORF1ab/nsp2534K534XAagTag11B.1.1.10.000327
ORF1ab/nsp2534K534delAAG---11B.1.1.1130.006993
ORF1ab/nsp2534K534delAAG---11B.1.1.1390.022727
ORF1ab/nsp2534K534KaaGaaA11B.1.1.1610.003534
ORF1ab/nsp2534K534NaaGaaT11B.1.1.2140.000055
ORF1ab/nsp2534K534RaAgaGg11B.1.1.2200.001859
ORF1ab/nsp2534K534RaAgaGg11B.1.1.250.000569
ORF1ab/nsp2534K534KaaGaaA11B.1.1.2840.000107
ORF1ab/nsp2534K534NaaGaaT11B.1.1.3060.000438
ORF1ab/nsp2534K534KaaGaaA11B.1.1.3060.000438
ORF1ab/nsp2534K534NaaGaaC11B.1.1.3180.000302
ORF1ab/nsp2534K534KaaGaaA11B.1.1.3180.000302
ORF1ab/nsp2534K534NaaGaaT11B.1.1.3260.001761
ORF1ab/nsp2534K534KaaGaaA11B.1.1.3510.002793
ORF1ab/nsp2534K534NaaGaaT11B.1.1.390.00051
ORF1ab/nsp2534K534NaaGaaT11B.1.1.3970.002252
ORF1ab/nsp2534K534delAAG---11B.1.1.4160.000905
ORF1ab/nsp2534K534NaaGaaT11B.1.1.4280.009434
ORF1ab/nsp2534K534RaAgaGg11B.1.1.4340.000349
ORF1ab/nsp2534K534delAAG---11B.1.1.4480.002033
ORF1ab/nsp2534K534NaaGaaT11B.1.1.4480.002033
ORF1ab/nsp2534K534RaAgaGg11B.1.1.4480.002033
ORF1ab/nsp2534K534KaaGaaA11B.1.1.4480.002033
ORF1ab/nsp2534K534KaaGaaA11B.1.1.5190.00004
ORF1ab/nsp2534K534MaAgaTg11B.1.1.5190.00004
ORF1ab/nsp2534K534RaAgaGg11B.1.1.580.005376
ORF1ab/nsp2534K534MaAgaTg11B.1.1.70.000001
ORF1ab/nsp2534K534VAAgGTg11B.1.1.70.000001
ORF1ab/nsp2534K534del2aAGa--11B.1.1.70.000001
ORF1ab/nsp2534K534XAagTag11B.1.1.70.000001
ORF1ab/nsp2534K534KaaGaaA11B.1.1280.000635
ORF1ab/nsp2534K534KaaGaaA11B.1.1470.000756
ORF1ab/nsp2534K534KaaGaaA11B.1.1590.012195
ORF1ab/nsp2534K534VAAgGTg11B.1.1600.000031
ORF1ab/nsp2534K534KaaGaaA11B.1.160.90.007194
ORF1ab/nsp2534K534KaaGaaA11B.1.177.440.000519
ORF1ab/nsp2534K534NaaGaaT11B.1.177.450.000381
ORF1ab/nsp2534K534NaaGaaT11B.1.177.520.001757
ORF1ab/nsp2534K534MaAgaTg11B.1.177.530.002392
ORF1ab/nsp2534K534EAagGag11B.1.177.570.000281
ORF1ab/nsp2534K534RaAgaGg11B.1.177.570.000281
ORF1ab/nsp2534K534NaaGaaT11B.1.177.600.000218
ORF1ab/nsp2534K534KaaGaaA11B.1.177.730.000566
ORF1ab/nsp2534K534del2AAg--g11B.1.177.730.000566
ORF1ab/nsp2534K534TaAgaCg11B.1.177.80.000752
ORF1ab/nsp2534K534del1aaGaa-11B.1.177.820.000477
ORF1ab/nsp2534K534KaaGaaA11B.1.177.820.000477
ORF1ab/nsp2534K534delAAG---11B.1.1790.003759
ORF1ab/nsp2534K534del1aaGaa-11B.1.20.000009
ORF1ab/nsp2534K534TaAgaCg11B.1.20.000009
ORF1ab/nsp2534K534NaaGaaT11B.1.2340.000132
ORF1ab/nsp2534K534NaaGaaT11B.1.2430.00007
ORF1ab/nsp2534K534KaaGaaA11B.1.2430.00007
ORF1ab/nsp2534K534KaaGaaA11B.1.2580.000067
ORF1ab/nsp2534K534delAAG---11B.1.2580.000067
ORF1ab/nsp2534K534QAagCag11B.1.2580.000067
ORF1ab/nsp2534K534KaaGaaA11B.1.3050.002151
ORF1ab/nsp2534K534NaaGaaT11B.1.3510.00003
ORF1ab/nsp2534K534KaaGaaA11B.1.360.000146
ORF1ab/nsp2534K534KaaGaaA11B.1.36.290.000517
ORF1ab/nsp2534K534RaAgaGg11B.1.3980.002976
ORF1ab/nsp2534K534NaaGaaT11B.1.4270.00005
ORF1ab/nsp2534K534KaaGaaA11B.1.4740.001901
ORF1ab/nsp2534K534RaAgaGg11B.1.4970.000315
ORF1ab/nsp2534K534KaaGaaA11B.1.4970.000315
ORF1ab/nsp2534K534del1aaGaa-11B.1.5160.001957
ORF1ab/nsp2534K534RaAgaGg11B.1.5510.00129
ORF1ab/nsp2534K534KaaGaaA11B.1.5510.00129
ORF1ab/nsp2534K534KaaGaaA11B.1.5610.000397
ORF1ab/nsp2534K534delAAG---11B.1.5610.000397
ORF1ab/nsp2534K534RaAgaGg11B.1.5680.001111
ORF1ab/nsp2534K534RaAgaGg11B.1.5760.000907
ORF1ab/nsp2534K534NaaGaaT11B.1.5760.000907
ORF1ab/nsp2534K534KaaGaaA11B.1.5960.000087
ORF1ab/nsp2534K534NaaGaaT11B.1.5960.000087
ORF1ab/nsp2534K534TaAgaCg11B.1.6090.000479
ORF1ab/nsp2534K534MaAgaTg11B.1.617.10.000129
ORF1ab/nsp2534K534TaAgaCg11B.1.617.20.000004
ORF1ab/nsp2534K534EAagGag11B.1.617.20.000004
ORF1ab/nsp2534K534XAagTag11B.1.617.20.000004
ORF1ab/nsp2534K534del1aaGaa-11B.1.617.20.000004
ORF1ab/nsp2534K534QAagCag11B.1.617.20.000004
ORF1ab/nsp2534K534delAAG---11B.1.617.20.000004
ORF1ab/nsp2534K534delAAG---11B.1.6210.000089
ORF1ab/nsp2534K534NaaGaaT11B.1.6370.000073
ORF1ab/nsp2534K534NaaGaaT11B.1.80.001972
ORF1ab/nsp2534K534RaAgaGg11B.390.002331
ORF1ab/nsp2534K534RaAgaGg11B.400.000364
ORF1ab/nsp2534K534RaAgaGg11B.410.008
ORF1ab/nsp2534K534delAAG---11B.570.015152
ORF1ab/nsp2534K534NaaGaaT11P.1.170.000162
ORF1ab/nsp2534K534delAAG---11P.20.000187
ORF1ab/nsp2534K534RaAgaGg11Q.10.000126
ORF1ab/nsp2534K534RaAgaGg11Q.30.000145
ORF1ab/nsp2534K534KaaGaaA11Q.70.001111
ORF1ab/nsp2534K534RaAgaGg11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.