CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 53

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp253E53EE233EsyngaAgaG3543541962-964
ORF1ab/nsp253E53GE233GnonsyngAagGa3033031962-964
ORF1ab/nsp253E53KE233KnonsynGaaAaa1171171962-964
ORF1ab/nsp253E53AE233AnonsyngAagCa69691962-964
ORF1ab/nsp253E53VE233VnonsyngAagTa36361962-964
ORF1ab/nsp253E53delE233deldelGAA---32321962-964
ORF1ab/nsp253E53DE233DnonsyngaAgaC31290.935484962-964
ORF1ab/nsp253E53DE233DnonsyngaAgaT3120.0645161962-964
ORF1ab/nsp253E53XE233XnonsynGaaTaa970.777778962-964
ORF1ab/nsp253E53XE233XnonsynGAaTGa920.222222962-964
ORF1ab/nsp253E53del1E233del1delGaa-aa320.666667962-964
ORF1ab/nsp253E53del1E233del1delgaAga-310.333333962-964
ORF1ab/nsp253E53QE233QnonsynGaaCaa221962-964
ORF1ab/nsp253E53RE233RnonsynGAaAGa111962-964

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp253E53EgaAgaG354354All0.000068
ORF1ab/nsp253E53GgAagGa303303All0.000058
ORF1ab/nsp253E53EgaAgaG145145AY.430.000642
ORF1ab/nsp253E53KGaaAaa117117All0.000022
ORF1ab/nsp253E53EgaAgaG9999B.1.1.70.000089
ORF1ab/nsp253E53AgAagCa6969All0.000013
ORF1ab/nsp253E53GgAagGa6565B.1.1.70.000058
ORF1ab/nsp253E53GgAagGa4545AY.40.00007
ORF1ab/nsp253E53VgAagTa3636All0.000007
ORF1ab/nsp253E53delGAA---3232All0.000006
ORF1ab/nsp253E53DgaAgaC2931All0.000006
ORF1ab/nsp253E53DgaAgaT231All0
ORF1ab/nsp253E53GgAagGa2525B.1.4630.201613
ORF1ab/nsp253E53GgAagGa2323B.1.160.190.821429
ORF1ab/nsp253E53DgaAgaC1920B.1.1.70.000017
ORF1ab/nsp253E53DgaAgaT120B.1.1.70.000001
ORF1ab/nsp253E53GgAagGa1919B.1.617.20.000072
ORF1ab/nsp253E53KGaaAaa1818B.1.1.70.000016
ORF1ab/nsp253E53EgaAgaG1616B.1.4290.000376
ORF1ab/nsp253E53AgAagCa1414AY.250.000084
ORF1ab/nsp253E53GgAagGa1414B.1.1600.000437
ORF1ab/nsp253E53KGaaAaa1414B.1.617.20.000053
ORF1ab/nsp253E53EgaAgaG1414C.370.001625
ORF1ab/nsp253E53KGaaAaa1313AY.40.00002
ORF1ab/nsp253E53AgAagCa1212B.1.1.70.000011
ORF1ab/nsp253E53KGaaAaa1111AY.840.004812
ORF1ab/nsp253E53GgAagGa1111B.10.000101
ORF1ab/nsp253E53KGaaAaa1111B.1.10.0002
ORF1ab/nsp253E53XGaaTaa79All0.000001
ORF1ab/nsp253E53XGAaTGa29All0
ORF1ab/nsp253E53KGaaAaa99AY.1020.000239
ORF1ab/nsp253E53AgAagCa99AY.1030.000056
ORF1ab/nsp253E53GgAagGa88A.23.10.005634
ORF1ab/nsp253E53GgAagGa88AY.250.000048
ORF1ab/nsp253E53GgAagGa77B.1.20.000062
ORF1ab/nsp253E53GgAagGa66B.1.1770.000079
ORF1ab/nsp253E53EgaAgaG55AY.1030.000031
ORF1ab/nsp253E53delGAA---55B.1.1.330.002104
ORF1ab/nsp253E53delGAA---55B.1.1.70.000004
ORF1ab/nsp253E53EgaAgaG55B.1.20.000044
ORF1ab/nsp253E53VgAagTa55B.1.20.000044
ORF1ab/nsp253E53EgaAgaG44AY.250.000024
ORF1ab/nsp253E53VgAagTa44AY.40.000006
ORF1ab/nsp253E53AgAagCa44AY.40.000006
ORF1ab/nsp253E53KGaaAaa44AY.430.000018
ORF1ab/nsp253E53EgaAgaG44B.1.1.10.001307
ORF1ab/nsp253E53delGAA---44B.1.1.3480.003185
ORF1ab/nsp253E53EgaAgaG44B.1.1600.000125
ORF1ab/nsp253E53GgAagGa44B.1.4290.000094
ORF1ab/nsp253E53AgAagCa44B.1.617.20.000015
ORF1ab/nsp253E53VgAagTa33A.2.5.20.004717
ORF1ab/nsp253E53del1Gaa-aa23All0
ORF1ab/nsp253E53del1gaAga-13All0
ORF1ab/nsp253E53GgAagGa33AY.1030.000019
ORF1ab/nsp253E53EgaAgaG33AY.1180.000188
ORF1ab/nsp253E53AgAagCa33AY.1190.000106
ORF1ab/nsp253E53GgAagGa33AY.200.000117
ORF1ab/nsp253E53GgAagGa33AY.240.001293
ORF1ab/nsp253E53EgaAgaG33AY.260.000085
ORF1ab/nsp253E53KGaaAaa33AY.30.00003
ORF1ab/nsp253E53DgaAgaC33AY.30.00003
ORF1ab/nsp253E53DgaAgaC33AY.40.000005
ORF1ab/nsp253E53GgAagGa33AY.430.000013
ORF1ab/nsp253E53AgAagCa33AY.440.000018
ORF1ab/nsp253E53GgAagGa33AY.50.000062
ORF1ab/nsp253E53EgaAgaG33AY.610.000314
ORF1ab/nsp253E53EgaAgaG33B.10.000027
ORF1ab/nsp253E53EgaAgaG33B.1.1.340.039474
ORF1ab/nsp253E53EgaAgaG33B.1.1.5230.004687
ORF1ab/nsp253E53VgAagTa33B.1.1.70.000003
ORF1ab/nsp253E53GgAagGa33B.1.177.100.002634
ORF1ab/nsp253E53GgAagGa33B.1.2210.000213
ORF1ab/nsp253E53EgaAgaG33B.1.3960.002117
ORF1ab/nsp253E53EgaAgaG33B.1.4090.002344
ORF1ab/nsp253E53GgAagGa33B.1.5240.004219
ORF1ab/nsp253E53GgAagGa220.111111
ORF1ab/nsp253E53QGaaCaa22All0
ORF1ab/nsp253E53KGaaAaa22AY.1130.000285
ORF1ab/nsp253E53KGaaAaa22AY.230.000139
ORF1ab/nsp253E53VgAagTa22AY.350.000466
ORF1ab/nsp253E53KGaaAaa22AY.440.000012
ORF1ab/nsp253E53VgAagTa22AY.440.000012
ORF1ab/nsp253E53KGaaAaa22AY.470.000062
ORF1ab/nsp253E53KGaaAaa22AY.50.000041
ORF1ab/nsp253E53EgaAgaG22AY.530.000575
ORF1ab/nsp253E53KGaaAaa22AY.550.001835
ORF1ab/nsp253E53GgAagGa22AY.60.000082
ORF1ab/nsp253E53GgAagGa22AY.750.000112
ORF1ab/nsp253E53GgAagGa22AY.930.000546
ORF1ab/nsp253E53EgaAgaG22AY.99.20.000184
ORF1ab/nsp253E53AgAagCa22B.10.000018
ORF1ab/nsp253E53EgaAgaG22B.1.10.000036
ORF1ab/nsp253E53XGAaTGa12B.1.10.000018
ORF1ab/nsp253E53XGaaTaa12B.1.10.000018
ORF1ab/nsp253E53GgAagGa22B.1.1.2070.002364
ORF1ab/nsp253E53GgAagGa22B.1.1.3170.000823
ORF1ab/nsp253E53EgaAgaG22B.1.1.3390.021053
ORF1ab/nsp253E53KGaaAaa22B.1.110.30.001437
ORF1ab/nsp253E53AgAagCa22B.1.1770.000026
ORF1ab/nsp253E53VgAagTa22B.1.177.330.003289
ORF1ab/nsp253E53GgAagGa22B.1.177.450.000762
ORF1ab/nsp253E53XGAaTGa12B.1.2210.000071
ORF1ab/nsp253E53XGaaTaa12B.1.2210.000071
ORF1ab/nsp253E53VgAagTa22B.1.3670.001585
ORF1ab/nsp253E53EgaAgaG22B.1.4270.000101
ORF1ab/nsp253E53KGaaAaa22B.1.5640.000852
ORF1ab/nsp253E53EgaAgaG22B.1.617.20.000008
ORF1ab/nsp253E53XGaaTaa22D.20.00015
ORF1ab/nsp253E53delGAA---22N.40.008511
ORF1ab/nsp253E53delGAA---22N.60.014184
ORF1ab/nsp253E53GgAagGa22P.1.140.000096
ORF1ab/nsp253E53delGAA---22P.20.000373
ORF1ab/nsp253E53RGAaAGa110.055556
ORF1ab/nsp253E53KGaaAaa110.055556
ORF1ab/nsp253E53GgAagGa11A0.000387
ORF1ab/nsp253E53GgAagGa11A.10.000282
ORF1ab/nsp253E53EgaAgaG11A.2.50.000499
ORF1ab/nsp253E53EgaAgaG11A.270.001656
ORF1ab/nsp253E53RGAaAGa11All0
ORF1ab/nsp253E53AgAagCa11AY.1000.000046
ORF1ab/nsp253E53AgAagCa11AY.1020.000027
ORF1ab/nsp253E53EgaAgaG11AY.1020.000027
ORF1ab/nsp253E53KGaaAaa11AY.1030.000006
ORF1ab/nsp253E53DgaAgaC11AY.1030.000006
ORF1ab/nsp253E53delGAA---11AY.1110.000183
ORF1ab/nsp253E53GgAagGa11AY.1140.000231
ORF1ab/nsp253E53GgAagGa11AY.1190.000035
ORF1ab/nsp253E53GgAagGa11AY.1200.000037
ORF1ab/nsp253E53KGaaAaa11AY.1200.000037
ORF1ab/nsp253E53GgAagGa11AY.1210.000135
ORF1ab/nsp253E53KGaaAaa11AY.130.000161
ORF1ab/nsp253E53GgAagGa11AY.16.10.00047
ORF1ab/nsp253E53AgAagCa11AY.200.000039
ORF1ab/nsp253E53GgAagGa11AY.230.00007
ORF1ab/nsp253E53delGAA---11AY.250.000006
ORF1ab/nsp253E53KGaaAaa11AY.260.000028
ORF1ab/nsp253E53GgAagGa11AY.260.000028
ORF1ab/nsp253E53AgAagCa11AY.260.000028
ORF1ab/nsp253E53VgAagTa11AY.260.000028
ORF1ab/nsp253E53AgAagCa11AY.290.000016
ORF1ab/nsp253E53AgAagCa11AY.30.00001
ORF1ab/nsp253E53GgAagGa11AY.30.00001
ORF1ab/nsp253E53EgaAgaG11AY.3.10.000085
ORF1ab/nsp253E53KGaaAaa11AY.320.000532
ORF1ab/nsp253E53GgAagGa11AY.380.000499
ORF1ab/nsp253E53EgaAgaG11AY.390.000025
ORF1ab/nsp253E53AgAagCa11AY.39.10.00004
ORF1ab/nsp253E53EgaAgaG11AY.40.000002
ORF1ab/nsp253E53delGAA---11AY.40.000002
ORF1ab/nsp253E53VgAagTa11AY.4.20.000022
ORF1ab/nsp253E53KGaaAaa11AY.4.2.10.000149
ORF1ab/nsp253E53AgAagCa11AY.430.000004
ORF1ab/nsp253E53GgAagGa11AY.440.000006
ORF1ab/nsp253E53DgaAgaC11AY.440.000006
ORF1ab/nsp253E53KGaaAaa11AY.450.000122
ORF1ab/nsp253E53VgAagTa11AY.460.000104
ORF1ab/nsp253E53GgAagGa11AY.46.40.000165
ORF1ab/nsp253E53AgAagCa11AY.470.000031
ORF1ab/nsp253E53VgAagTa11AY.470.000031
ORF1ab/nsp253E53EgaAgaG11AY.50.000021
ORF1ab/nsp253E53KGaaAaa11AY.5.30.000337
ORF1ab/nsp253E53KGaaAaa11AY.610.000105
ORF1ab/nsp253E53EgaAgaG11AY.620.000436
ORF1ab/nsp253E53EgaAgaG11AY.7.10.000113
ORF1ab/nsp253E53GgAagGa11AY.700.000209
ORF1ab/nsp253E53EgaAgaG11AY.740.000116
ORF1ab/nsp253E53AgAagCa11AY.930.000273
ORF1ab/nsp253E53KGaaAaa11AY.99.10.001553
ORF1ab/nsp253E53DgaAgaC11B.10.000009
ORF1ab/nsp253E53XGaaTaa11B.10.000009
ORF1ab/nsp253E53VgAagTa11B.10.000009
ORF1ab/nsp253E53delGAA---11B.10.000009
ORF1ab/nsp253E53GgAagGa11B.1.10.000018
ORF1ab/nsp253E53GgAagGa11B.1.1.1530.001095
ORF1ab/nsp253E53AgAagCa11B.1.1.250.000569
ORF1ab/nsp253E53VgAagTa11B.1.1.280.000311
ORF1ab/nsp253E53GgAagGa11B.1.1.280.000311
ORF1ab/nsp253E53KGaaAaa11B.1.1.3060.000438
ORF1ab/nsp253E53VgAagTa11B.1.1.3980.003226
ORF1ab/nsp253E53XGaaTaa11B.1.1.4090.002833
ORF1ab/nsp253E53delGAA---11B.1.1.4200.001006
ORF1ab/nsp253E53EgaAgaG11B.1.1.5190.00004
ORF1ab/nsp253E53EgaAgaG11B.1.1.670.004566
ORF1ab/nsp253E53QGaaCaa11B.1.1.80.003584
ORF1ab/nsp253E53XGaaTaa11B.1.1180.006711
ORF1ab/nsp253E53VgAagTa11B.1.1770.000013
ORF1ab/nsp253E53VgAagTa11B.1.177.40.000211
ORF1ab/nsp253E53delGAA---11B.1.177.830.001481
ORF1ab/nsp253E53GgAagGa11B.1.177.860.000183
ORF1ab/nsp253E53del1Gaa-aa11B.1.20.000009
ORF1ab/nsp253E53EgaAgaG11B.1.2210.000071
ORF1ab/nsp253E53EgaAgaG11B.1.2400.000216
ORF1ab/nsp253E53EgaAgaG11B.1.2410.000812
ORF1ab/nsp253E53AgAagCa11B.1.2430.00007
ORF1ab/nsp253E53KGaaAaa11B.1.2580.000067
ORF1ab/nsp253E53KGaaAaa11B.1.2810.021739
ORF1ab/nsp253E53EgaAgaG11B.1.3510.00003
ORF1ab/nsp253E53VgAagTa11B.1.351.30.000876
ORF1ab/nsp253E53GgAagGa11B.1.360.000146
ORF1ab/nsp253E53AgAagCa11B.1.4280.00102
ORF1ab/nsp253E53delGAA---11B.1.4290.000024
ORF1ab/nsp253E53DgaAgaT11B.1.4340.052632
ORF1ab/nsp253E53EgaAgaG11B.1.4520.013699
ORF1ab/nsp253E53GgAagGa11B.1.4620.007246
ORF1ab/nsp253E53EgaAgaG11B.1.466.20.000391
ORF1ab/nsp253E53AgAagCa11B.1.466.20.000391
ORF1ab/nsp253E53GgAagGa11B.1.5260.000024
ORF1ab/nsp253E53EgaAgaG11B.1.5640.000426
ORF1ab/nsp253E53EgaAgaG11B.1.5750.000303
ORF1ab/nsp253E53GgAagGa11B.1.5760.000907
ORF1ab/nsp253E53delGAA---11B.1.5950.000261
ORF1ab/nsp253E53KGaaAaa11B.1.5950.000261
ORF1ab/nsp253E53GgAagGa11B.1.5960.000087
ORF1ab/nsp253E53GgAagGa11B.1.5990.00365
ORF1ab/nsp253E53EgaAgaG11B.1.6010.030303
ORF1ab/nsp253E53GgAagGa11B.1.6090.000479
ORF1ab/nsp253E53VgAagTa11B.1.617.20.000004
ORF1ab/nsp253E53delGAA---11B.1.617.20.000004
ORF1ab/nsp253E53delGAA---11B.1.617.30.002985
ORF1ab/nsp253E53DgaAgaC11B.1.80.001972
ORF1ab/nsp253E53delGAA---11B.340.013699
ORF1ab/nsp253E53delGAA---11C.350.000774
ORF1ab/nsp253E53KGaaAaa11C.370.000116
ORF1ab/nsp253E53del1Gaa-aa11D.20.000075
ORF1ab/nsp253E53EgaAgaG11P.10.000016
ORF1ab/nsp253E53VgAagTa11P.10.000016
ORF1ab/nsp253E53AgAagCa11P.10.000016
ORF1ab/nsp253E53GgAagGa11P.10.000016
ORF1ab/nsp253E53QGaaCaa11P.1.10.000318
ORF1ab/nsp253E53AgAagCa11P.1.140.000048
ORF1ab/nsp253E53KGaaAaa11P.1.170.000162
ORF1ab/nsp253E53GgAagGa11P.20.000187
ORF1ab/nsp253E53VgAagTa11P.40.003802
ORF1ab/nsp253E53GgAagGa11Q.10.000126
ORF1ab/nsp253E53del1gaAga-11Q.80.000165
ORF1ab/nsp253E53KGaaAaa11Q.80.000165