CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 524

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2524N524HN704HnonsynAatCat29429412375-2377
ORF1ab/nsp2524N524TN704TnonsynaAtaCt22422412375-2377
ORF1ab/nsp2524N524NN704NsynaaTaaC18218212375-2377
ORF1ab/nsp2524N524SN704SnonsynaAtaGt1471450.9863952375-2377
ORF1ab/nsp2524N524SN704SnonsynaATaGC14710.006802722375-2377
ORF1ab/nsp2524N524SN704SnonsynAAtTCt14710.006802722375-2377
ORF1ab/nsp2524N524DN704DnonsynAatGat11011012375-2377
ORF1ab/nsp2524N524delN704deldelAAT---10510512375-2377
ORF1ab/nsp2524N524KN704KnonsynaaTaaG25130.522375-2377
ORF1ab/nsp2524N524KN704KnonsynaaTaaA25120.482375-2377
ORF1ab/nsp2524N524YN704YnonsynAatTat131312375-2377
ORF1ab/nsp2524N524IN704InonsynaAtaTt4412375-2377
ORF1ab/nsp2524N524del1N704del1delaaTaa-4412375-2377
ORF1ab/nsp2524N524EN704EnonsynAaTGaA320.6666672375-2377
ORF1ab/nsp2524N524EN704EnonsynAaTGaG310.3333332375-2377
ORF1ab/nsp2524N524PN704PnonsynAAtCCt2212375-2377
ORF1ab/nsp2524N524FN704FnonsynAAtTTt1112375-2377

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2524N524HAatCat294294All0.000056
ORF1ab/nsp2524N524TaAtaCt224224All0.000043
ORF1ab/nsp2524N524NaaTaaC182182All0.000035
ORF1ab/nsp2524N524HAatCat176176B.1.1.3620.988764
ORF1ab/nsp2524N524TaAtaCt167167AY.40.00026
ORF1ab/nsp2524N524SaAtaGt145147All0.000028
ORF1ab/nsp2524N524SaATaGC1147All0
ORF1ab/nsp2524N524SAAtTCt1147All0
ORF1ab/nsp2524N524DAatGat110110All0.000021
ORF1ab/nsp2524N524delAAT---105105All0.00002
ORF1ab/nsp2524N524HAatCat6161AY.40.000095
ORF1ab/nsp2524N524NaaTaaC4545P.1.10.014295
ORF1ab/nsp2524N524DAatGat3737B.1.617.20.000139
ORF1ab/nsp2524N524NaaTaaC3535B.1.1.70.000031
ORF1ab/nsp2524N524SaAtaGt3333AY.1030.000205
ORF1ab/nsp2524N524TaAtaCt2828B.1.4090.021875
ORF1ab/nsp2524N524KaaTaaG1325All0.000002
ORF1ab/nsp2524N524KaaTaaA1225All0.000002
ORF1ab/nsp2524N524delAAT---2525B.1.1.70.000022
ORF1ab/nsp2524N524HAatCat2222B.1.1.70.00002
ORF1ab/nsp2524N524SaAtaGt2121AY.440.000128
ORF1ab/nsp2524N524DAatGat2020AY.40.000031
ORF1ab/nsp2524N524NaaTaaC1919B.1.3510.000565
ORF1ab/nsp2524N524YAatTat1313All0.000002
ORF1ab/nsp2524N524SaAtaGt1213B.1.1.70.000011
ORF1ab/nsp2524N524SAAtTCt113B.1.1.70.000001
ORF1ab/nsp2524N524NaaTaaC1313P.10.000205
ORF1ab/nsp2524N524SaAtaGt1212AY.1170.001014
ORF1ab/nsp2524N524NaaTaaC1010AY.40.000016
ORF1ab/nsp2524N524DAatGat99B.1.1.70.000008
ORF1ab/nsp2524N524SaAtaGt99B.1.617.20.000034
ORF1ab/nsp2524N524delAAT---880.444444
ORF1ab/nsp2524N524delAAT---88B.1.617.20.00003
ORF1ab/nsp2524N524delAAT---77B.10.000064
ORF1ab/nsp2524N524DAatGat66AY.1030.000037
ORF1ab/nsp2524N524DAatGat66AY.250.000036
ORF1ab/nsp2524N524TaAtaCt66AY.690.00112
ORF1ab/nsp2524N524HAatCat66B.10.000055
ORF1ab/nsp2524N524HAatCat66B.1.4270.000303
ORF1ab/nsp2524N524NaaTaaC66B.1.617.20.000023
ORF1ab/nsp2524N524NaaTaaC55AY.1030.000031
ORF1ab/nsp2524N524KaaTaaA45AY.250.000024
ORF1ab/nsp2524N524KaaTaaG15AY.250.000006
ORF1ab/nsp2524N524SaAtaGt55AY.40.000008
ORF1ab/nsp2524N524del1aaTaa-44All0.000001
ORF1ab/nsp2524N524IaAtaTt44All0.000001
ORF1ab/nsp2524N524delAAT---44AY.430.000018
ORF1ab/nsp2524N524NaaTaaC44B.1.10.000073
ORF1ab/nsp2524N524TaAtaCt44B.1.1.70.000004
ORF1ab/nsp2524N524NaaTaaC44B.1.20.000035
ORF1ab/nsp2524N524HAatCat44B.1.6090.001918
ORF1ab/nsp2524N524EAaTGaA23All0
ORF1ab/nsp2524N524EAaTGaG13All0
ORF1ab/nsp2524N524delAAT---33AY.250.000018
ORF1ab/nsp2524N524SaAtaGt33AY.250.000018
ORF1ab/nsp2524N524YAatTat33AY.30.00003
ORF1ab/nsp2524N524NaaTaaC33AY.440.000018
ORF1ab/nsp2524N524SaAtaGt33AY.75.10.000541
ORF1ab/nsp2524N524NaaTaaC33AY.980.000237
ORF1ab/nsp2524N524DAatGat33AY.99.20.000276
ORF1ab/nsp2524N524NaaTaaC33B.10.000027
ORF1ab/nsp2524N524KaaTaaG33B.10.000027
ORF1ab/nsp2524N524delAAT---33B.1.10.000054
ORF1ab/nsp2524N524delAAT---33B.1.1.330.001263
ORF1ab/nsp2524N524KaaTaaA33B.1.1.70.000003
ORF1ab/nsp2524N524TaAtaCt33B.1.1770.00004
ORF1ab/nsp2524N524SaAtaGt33B.1.2220.005076
ORF1ab/nsp2524N524DAatGat33B.1.360.000438
ORF1ab/nsp2524N524NaaTaaC33B.1.4090.002344
ORF1ab/nsp2524N524SaAtaGt33B.1.5260.000071
ORF1ab/nsp2524N524TaAtaCt33B.1.5960.000261
ORF1ab/nsp2524N524HAatCat33B.1.617.20.000011
ORF1ab/nsp2524N524SaAtaGt33P.10.000047
ORF1ab/nsp2524N524HAatCat22AD.20.000438
ORF1ab/nsp2524N524PAAtCCt22All0
ORF1ab/nsp2524N524SaAtaGt22AY.1130.000285
ORF1ab/nsp2524N524NaaTaaC22AY.140.000176
ORF1ab/nsp2524N524DAatGat22AY.23.10.000835
ORF1ab/nsp2524N524DAatGat22AY.290.000032
ORF1ab/nsp2524N524SaAtaGt22AY.30.00002
ORF1ab/nsp2524N524NaaTaaC22AY.350.000466
ORF1ab/nsp2524N524delAAT---22AY.40.000003
ORF1ab/nsp2524N524KaaTaaG22AY.40.000003
ORF1ab/nsp2524N524HAatCat22AY.4.20.000043
ORF1ab/nsp2524N524SaAtaGt22AY.430.000009
ORF1ab/nsp2524N524delAAT---22AY.750.000112
ORF1ab/nsp2524N524delAAT---22AY.990.002099
ORF1ab/nsp2524N524del1aaTaa-22B.10.000018
ORF1ab/nsp2524N524DAatGat22B.10.000018
ORF1ab/nsp2524N524YAatTat22B.10.000018
ORF1ab/nsp2524N524SaAtaGt22B.1.10.000036
ORF1ab/nsp2524N524HAatCat22B.1.10.000036
ORF1ab/nsp2524N524KaaTaaA22B.1.10.000036
ORF1ab/nsp2524N524NaaTaaC22B.1.1.2840.000215
ORF1ab/nsp2524N524NaaTaaC22B.1.1.3030.005525
ORF1ab/nsp2524N524delAAT---22B.1.1.3480.001592
ORF1ab/nsp2524N524NaaTaaC22B.1.1.5190.000079
ORF1ab/nsp2524N524SaAtaGt22B.1.1.5190.000079
ORF1ab/nsp2524N524YAatTat22B.1.1.70.000002
ORF1ab/nsp2524N524NaaTaaC22B.1.177.770.001452
ORF1ab/nsp2524N524SaAtaGt22B.1.2430.000139
ORF1ab/nsp2524N524DAatGat22B.1.3510.000059
ORF1ab/nsp2524N524NaaTaaC22B.1.3970.009709
ORF1ab/nsp2524N524delAAT---22B.1.4240.016129
ORF1ab/nsp2524N524delAAT---22B.1.4290.000047
ORF1ab/nsp2524N524SaAtaGt22B.1.4290.000047
ORF1ab/nsp2524N524TaAtaCt22B.1.617.10.000258
ORF1ab/nsp2524N524delAAT---22B.1.617.10.000258
ORF1ab/nsp2524N524delAAT---22B.1.6210.000177
ORF1ab/nsp2524N524NaaTaaC22D.20.00015
ORF1ab/nsp2524N524delAAT---22N.60.014184
ORF1ab/nsp2524N524SaAtaGt22P.1.140.000096
ORF1ab/nsp2524N524DAatGat110.055556
ORF1ab/nsp2524N524SaATaGC11A.10.000282
ORF1ab/nsp2524N524DAatGat11A.2.50.000499
ORF1ab/nsp2524N524DAatGat11A.210.00277
ORF1ab/nsp2524N524FAAtTTt11All0
ORF1ab/nsp2524N524DAatGat11AY.1010.00049
ORF1ab/nsp2524N524SaAtaGt11AY.1010.00049
ORF1ab/nsp2524N524HAatCat11AY.1020.000027
ORF1ab/nsp2524N524TaAtaCt11AY.1030.000006
ORF1ab/nsp2524N524SaAtaGt11AY.1040.001984
ORF1ab/nsp2524N524delAAT---11AY.1080.001103
ORF1ab/nsp2524N524SaAtaGt11AY.1100.000113
ORF1ab/nsp2524N524KaaTaaG11AY.1110.000183
ORF1ab/nsp2524N524delAAT---11AY.1130.000142
ORF1ab/nsp2524N524delAAT---11AY.1170.000085
ORF1ab/nsp2524N524DAatGat11AY.1170.000085
ORF1ab/nsp2524N524del1aaTaa-11AY.1200.000037
ORF1ab/nsp2524N524TaAtaCt11AY.120.20.001285
ORF1ab/nsp2524N524TaAtaCt11AY.250.000006
ORF1ab/nsp2524N524delAAT---11AY.260.000028
ORF1ab/nsp2524N524SaAtaGt11AY.270.000065
ORF1ab/nsp2524N524TaAtaCt11AY.290.000016
ORF1ab/nsp2524N524delAAT---11AY.29.10.000221
ORF1ab/nsp2524N524TaAtaCt11AY.30.00001
ORF1ab/nsp2524N524NaaTaaC11AY.30.00001
ORF1ab/nsp2524N524NaaTaaC11AY.390.000025
ORF1ab/nsp2524N524DAatGat11AY.39.1.10.000725
ORF1ab/nsp2524N524EAaTGaG11AY.430.000004
ORF1ab/nsp2524N524NaaTaaC11AY.430.000004
ORF1ab/nsp2524N524EAaTGaA11AY.440.000006
ORF1ab/nsp2524N524IaAtaTt11AY.460.000104
ORF1ab/nsp2524N524SaAtaGt11AY.460.000104
ORF1ab/nsp2524N524DAatGat11AY.46.40.000165
ORF1ab/nsp2524N524delAAT---11AY.46.60.000072
ORF1ab/nsp2524N524IaAtaTt11AY.46.60.000072
ORF1ab/nsp2524N524SaAtaGt11AY.610.000105
ORF1ab/nsp2524N524NaaTaaC11AY.610.000105
ORF1ab/nsp2524N524delAAT---11AY.620.000436
ORF1ab/nsp2524N524delAAT---11AY.670.000464
ORF1ab/nsp2524N524delAAT---11AY.75.10.00018
ORF1ab/nsp2524N524TaAtaCt11AY.840.000437
ORF1ab/nsp2524N524delAAT---11AY.840.000437
ORF1ab/nsp2524N524KaaTaaG11AY.850.000427
ORF1ab/nsp2524N524SaAtaGt11AY.850.000427
ORF1ab/nsp2524N524KaaTaaG11AY.90.000068
ORF1ab/nsp2524N524SaAtaGt11AY.9.10.000084
ORF1ab/nsp2524N524EAaTGaA11AY.9.20.000037
ORF1ab/nsp2524N524DAatGat11AY.9.20.000037
ORF1ab/nsp2524N524DAatGat11AY.980.000079
ORF1ab/nsp2524N524delAAT---11AY.98.10.000048
ORF1ab/nsp2524N524TaAtaCt11B.10.000009
ORF1ab/nsp2524N524TaAtaCt11B.1.10.000018
ORF1ab/nsp2524N524DAatGat11B.1.1.10.000327
ORF1ab/nsp2524N524delAAT---11B.1.1.1370.0125
ORF1ab/nsp2524N524delAAT---11B.1.1.1390.022727
ORF1ab/nsp2524N524DAatGat11B.1.1.1840.058824
ORF1ab/nsp2524N524NaaTaaC11B.1.1.2160.00089
ORF1ab/nsp2524N524HAatCat11B.1.1.2250.007194
ORF1ab/nsp2524N524SaAtaGt11B.1.1.2790.001121
ORF1ab/nsp2524N524YAatTat11B.1.1.3060.000438
ORF1ab/nsp2524N524KaaTaaG11B.1.1.3060.000438
ORF1ab/nsp2524N524HAatCat11B.1.1.3110.000358
ORF1ab/nsp2524N524SaAtaGt11B.1.1.3170.000412
ORF1ab/nsp2524N524SaAtaGt11B.1.1.3260.001761
ORF1ab/nsp2524N524YAatTat11B.1.1.3350.012987
ORF1ab/nsp2524N524delAAT---11B.1.1.4160.000905
ORF1ab/nsp2524N524KaaTaaG11B.1.1.4340.000349
ORF1ab/nsp2524N524delAAT---11B.1.1.4480.002033
ORF1ab/nsp2524N524DAatGat11B.1.1.4860.001577
ORF1ab/nsp2524N524IaAtaTt11B.1.1.5190.00004
ORF1ab/nsp2524N524delAAT---11B.1.1.5230.001563
ORF1ab/nsp2524N524HAatCat11B.1.1.5230.001563
ORF1ab/nsp2524N524FAAtTTt11B.1.1.70.000001
ORF1ab/nsp2524N524SaAtaGt11B.1.1.700.000341
ORF1ab/nsp2524N524DAatGat11B.1.1.700.000341
ORF1ab/nsp2524N524SaAtaGt11B.1.110.30.000718
ORF1ab/nsp2524N524SaAtaGt11B.1.1390.000733
ORF1ab/nsp2524N524NaaTaaC11B.1.1600.000031
ORF1ab/nsp2524N524SaAtaGt11B.1.1600.000031
ORF1ab/nsp2524N524SaAtaGt11B.1.1770.000013
ORF1ab/nsp2524N524SaAtaGt11B.1.177.320.00135
ORF1ab/nsp2524N524SaAtaGt11B.1.177.440.000519
ORF1ab/nsp2524N524NaaTaaC11B.1.177.440.000519
ORF1ab/nsp2524N524HAatCat11B.1.177.440.000519
ORF1ab/nsp2524N524IaAtaTt11B.1.177.730.000566
ORF1ab/nsp2524N524KaaTaaG11B.1.177.80.000752
ORF1ab/nsp2524N524delAAT---11B.1.1790.003759
ORF1ab/nsp2524N524YAatTat11B.1.20.000009
ORF1ab/nsp2524N524SaAtaGt11B.1.20.000009
ORF1ab/nsp2524N524PAAtCCt11B.1.2340.000132
ORF1ab/nsp2524N524HAatCat11B.1.2340.000132
ORF1ab/nsp2524N524TaAtaCt11B.1.2340.000132
ORF1ab/nsp2524N524HAatCat11B.1.2400.000216
ORF1ab/nsp2524N524delAAT---11B.1.2580.000067
ORF1ab/nsp2524N524NaaTaaC11B.1.3110.000275
ORF1ab/nsp2524N524SaAtaGt11B.1.3110.000275
ORF1ab/nsp2524N524del1aaTaa-11B.1.3300.028571
ORF1ab/nsp2524N524HAatCat11B.1.3800.006623
ORF1ab/nsp2524N524YAatTat11B.1.3960.000706
ORF1ab/nsp2524N524YAatTat11B.1.415.10.007576
ORF1ab/nsp2524N524delAAT---11B.1.416.10.001563
ORF1ab/nsp2524N524NaaTaaC11B.1.4270.00005
ORF1ab/nsp2524N524SaAtaGt11B.1.438.10.000107
ORF1ab/nsp2524N524KaaTaaG11B.1.466.20.000391
ORF1ab/nsp2524N524NaaTaaC11B.1.5250.000113
ORF1ab/nsp2524N524HAatCat11B.1.5260.000024
ORF1ab/nsp2524N524DAatGat11B.1.5260.000024
ORF1ab/nsp2524N524KaaTaaA11B.1.5390.017544
ORF1ab/nsp2524N524delAAT---11B.1.5610.000397
ORF1ab/nsp2524N524TaAtaCt11B.1.5650.00081
ORF1ab/nsp2524N524delAAT---11B.1.5950.000261
ORF1ab/nsp2524N524KaaTaaA11B.1.617.10.000129
ORF1ab/nsp2524N524SaAtaGt11B.1.617.10.000129
ORF1ab/nsp2524N524DAatGat11B.1.6210.000089
ORF1ab/nsp2524N524DAatGat11B.1.6270.00202
ORF1ab/nsp2524N524PAAtCCt11B.40.002208
ORF1ab/nsp2524N524delAAT---11B.570.015152
ORF1ab/nsp2524N524NaaTaaC11C.370.000116
ORF1ab/nsp2524N524delAAT---11P.10.000016
ORF1ab/nsp2524N524TaAtaCt11P.10.000016
ORF1ab/nsp2524N524KaaTaaA11P.10.000016
ORF1ab/nsp2524N524delAAT---11P.1.10.000318
ORF1ab/nsp2524N524NaaTaaC11P.1.120.000484
ORF1ab/nsp2524N524YAatTat11P.1.140.000048
ORF1ab/nsp2524N524NaaTaaC11P.1.140.000048
ORF1ab/nsp2524N524DAatGat11P.1.150.000232
ORF1ab/nsp2524N524DAatGat11P.1.160.000374
ORF1ab/nsp2524N524HAatCat11P.20.000187
ORF1ab/nsp2524N524delAAT---11P.20.000187
ORF1ab/nsp2524N524delAAT---11Q.20.000613