CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 524 | N524H | N704H | nonsyn | Aat | Cat | 294 | 294 | 1 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524T | N704T | nonsyn | aAt | aCt | 224 | 224 | 1 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524N | N704N | syn | aaT | aaC | 182 | 182 | 1 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524S | N704S | nonsyn | aAt | aGt | 147 | 145 | 0.986395 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524S | N704S | nonsyn | aAT | aGC | 147 | 1 | 0.00680272 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524S | N704S | nonsyn | AAt | TCt | 147 | 1 | 0.00680272 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524D | N704D | nonsyn | Aat | Gat | 110 | 110 | 1 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524del | N704del | del | AAT | --- | 105 | 105 | 1 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524K | N704K | nonsyn | aaT | aaG | 25 | 13 | 0.52 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524K | N704K | nonsyn | aaT | aaA | 25 | 12 | 0.48 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524Y | N704Y | nonsyn | Aat | Tat | 13 | 13 | 1 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524I | N704I | nonsyn | aAt | aTt | 4 | 4 | 1 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524del1 | N704del1 | del | aaT | aa- | 4 | 4 | 1 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524E | N704E | nonsyn | AaT | GaA | 3 | 2 | 0.666667 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524E | N704E | nonsyn | AaT | GaG | 3 | 1 | 0.333333 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524P | N704P | nonsyn | AAt | CCt | 2 | 2 | 1 | 2375-2377 |
ORF1ab/nsp2 | 524 | N524F | N704F | nonsyn | AAt | TTt | 1 | 1 | 1 | 2375-2377 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 294 | 294 | All | 0.000056 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 224 | 224 | All | 0.000043 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 182 | 182 | All | 0.000035 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 176 | 176 | B.1.1.362 | 0.988764 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 167 | 167 | AY.4 | 0.00026 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 145 | 147 | All | 0.000028 |
ORF1ab/nsp2 | 524 | N524S | aAT | aGC | 1 | 147 | All | 0 |
ORF1ab/nsp2 | 524 | N524S | AAt | TCt | 1 | 147 | All | 0 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 110 | 110 | All | 0.000021 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 105 | 105 | All | 0.00002 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 61 | 61 | AY.4 | 0.000095 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 45 | 45 | P.1.1 | 0.014295 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 37 | 37 | B.1.617.2 | 0.000139 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 35 | 35 | B.1.1.7 | 0.000031 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 33 | 33 | AY.103 | 0.000205 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 28 | 28 | B.1.409 | 0.021875 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaG | 13 | 25 | All | 0.000002 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaA | 12 | 25 | All | 0.000002 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 21 | 21 | AY.44 | 0.000128 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 19 | 19 | B.1.351 | 0.000565 |
ORF1ab/nsp2 | 524 | N524Y | Aat | Tat | 13 | 13 | All | 0.000002 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 12 | 13 | B.1.1.7 | 0.000011 |
ORF1ab/nsp2 | 524 | N524S | AAt | TCt | 1 | 13 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 8 | 8 | 0.444444 | |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 6 | 6 | AY.69 | 0.00112 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaA | 4 | 5 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaG | 1 | 5 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 524 | N524del1 | aaT | aa- | 4 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 524 | N524I | aAt | aTt | 4 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp2 | 524 | N524E | AaT | GaA | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 524 | N524E | AaT | GaG | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 524 | N524Y | Aat | Tat | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaG | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaA | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 3 | 3 | B.1.222 | 0.005076 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp2 | 524 | N524P | AAt | CCt | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaG | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp2 | 524 | N524del1 | aaT | aa- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 524 | N524Y | Aat | Tat | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaA | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 2 | 2 | B.1.1.303 | 0.005525 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 524 | N524Y | Aat | Tat | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 2 | 2 | B.1.397 | 0.009709 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 524 | N524S | aAT | aGC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp2 | 524 | N524F | AAt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaG | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 524 | N524del1 | aaT | aa- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp2 | 524 | N524E | AaT | GaG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 524 | N524E | AaT | GaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 524 | N524I | aAt | aTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 524 | N524I | aAt | aTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 524 | N524E | AaT | GaA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | B.1.1.184 | 0.058824 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp2 | 524 | N524Y | Aat | Tat | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 524 | N524Y | Aat | Tat | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaG | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp2 | 524 | N524I | aAt | aTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 524 | N524F | AAt | TTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp2 | 524 | N524I | aAt | aTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaG | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 524 | N524Y | Aat | Tat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 524 | N524P | AAt | CCt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 524 | N524del1 | aaT | aa- | 1 | 1 | B.1.330 | 0.028571 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp2 | 524 | N524Y | Aat | Tat | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 524 | N524Y | Aat | Tat | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaA | 1 | 1 | B.1.539 | 0.017544 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 524 | N524S | aAt | aGt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp2 | 524 | N524P | AAt | CCt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 524 | N524T | aAt | aCt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 524 | N524K | aaT | aaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 524 | N524Y | Aat | Tat | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 524 | N524N | aaT | aaC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 524 | N524D | Aat | Gat | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 524 | N524H | Aat | Cat | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 524 | N524del | AAT | --- | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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