CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 522 | A522A | A702A | syn | gcC | gcT | 1008 | 840 | 0.833333 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522A | A702A | syn | gcC | gcA | 1008 | 165 | 0.16369 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522A | A702A | syn | gcC | gcG | 1008 | 3 | 0.00297619 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522T | A702T | nonsyn | Gcc | Acc | 623 | 622 | 0.998395 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522T | A702T | nonsyn | GcC | AcT | 623 | 1 | 0.00160514 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522S | A702S | nonsyn | Gcc | Tcc | 558 | 556 | 0.996416 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522S | A702S | nonsyn | GCc | AGc | 558 | 1 | 0.00179211 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522S | A702S | nonsyn | GcC | TcA | 558 | 1 | 0.00179211 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522V | A702V | nonsyn | gCc | gTc | 365 | 365 | 1 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522del | A702del | del | GCC | --- | 109 | 109 | 1 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522D | A702D | nonsyn | gCc | gAc | 8 | 7 | 0.875 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522P | A702P | nonsyn | Gcc | Ccc | 8 | 6 | 0.75 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522P | A702P | nonsyn | GcC | CcT | 8 | 2 | 0.25 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522D | A702D | nonsyn | gCC | gAT | 8 | 1 | 0.125 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522G | A702G | nonsyn | gCC | gGG | 4 | 2 | 0.5 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522G | A702G | nonsyn | gCc | gGc | 4 | 1 | 0.25 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522G | A702G | nonsyn | gCC | gGT | 4 | 1 | 0.25 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522del2 | A702del2 | del | GCc | --c | 3 | 3 | 1 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522K | A702K | nonsyn | GCC | AAA | 2 | 2 | 1 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522N | A702N | nonsyn | GCC | AAT | 2 | 2 | 1 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522F | A702F | nonsyn | GCC | TTT | 2 | 1 | 0.5 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522F | A702F | nonsyn | GCc | TTc | 2 | 1 | 0.5 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522del1 | A702del1 | del | GCC | -ST | 2 | 1 | 0.5 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522del1 | A702del1 | del | gCc | g-c | 2 | 1 | 0.5 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522X | A702X | nonsyn | GCC | TAG | 1 | 1 | 1 | 2369-2371 |
ORF1ab/nsp2 | 522 | A522H | A702H | nonsyn | GCc | CAc | 1 | 1 | 1 | 2369-2371 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 840 | 1008 | All | 0.000161 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 165 | 1008 | All | 0.000032 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcG | 3 | 1008 | All | 0.000001 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 622 | 623 | All | 0.000119 |
ORF1ab/nsp2 | 522 | A522T | GcC | AcT | 1 | 623 | All | 0 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 556 | 558 | All | 0.000106 |
ORF1ab/nsp2 | 522 | A522S | GCc | AGc | 1 | 558 | All | 0 |
ORF1ab/nsp2 | 522 | A522S | GcC | TcA | 1 | 558 | All | 0 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 365 | 365 | All | 0.00007 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 323 | 323 | AY.120 | 0.012009 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 123 | 174 | B.1.1.7 | 0.00011 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 51 | 174 | B.1.1.7 | 0.000046 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 141 | 141 | B.1.258.19 | 1 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 127 | 127 | B.1.617.2 | 0.000478 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 97 | 123 | AY.4 | 0.000151 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 26 | 123 | AY.4 | 0.00004 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 123 | 123 | B.1.596 | 0.010718 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 109 | 109 | All | 0.000021 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 82 | 82 | B.1 | 0.000751 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 71 | 71 | B.1.561 | 0.028186 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 68 | 68 | AY.102 | 0.001803 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 61 | 61 | P.1.15 | 0.014173 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 58 | 58 | AY.5 | 0.001198 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 54 | 54 | AY.4 | 0.000084 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 52 | 52 | B.1.1.398 | 0.167742 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 39 | 41 | B.1.617.2 | 0.000147 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 2 | 41 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 33 | 33 | B.1.258 | 0.002196 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 31 | 31 | AY.4 | 0.000048 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 31 | 31 | B.1.1.7 | 0.000028 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 28 | 28 | P.2 | 0.005226 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 27 | 27 | AY.44 | 0.000164 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 26 | 26 | AY.25 | 0.000156 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 26 | 26 | B.1.258.17 | 0.002703 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 25 | 25 | AY.20 | 0.000972 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 24 | 24 | AT.1 | 0.123077 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 22 | 23 | B.1.1.7 | 0.00002 |
ORF1ab/nsp2 | 522 | A522T | GcC | AcT | 1 | 23 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 22 | 22 | AY.4.5 | 0.002365 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 17 | 18 | B.1.427 | 0.000858 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 18 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 10 | 16 | AY.43 | 0.000044 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 6 | 16 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 11 | 16 | B.1 | 0.000101 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 5 | 16 | B.1 | 0.000046 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 14 | 14 | B.1.1.258 | 0.045603 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 10 | 14 | B.1.2 | 0.000088 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 4 | 14 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 8 | 13 | AY.103 | 0.00005 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 5 | 13 | AY.103 | 0.000031 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 11 | 11 | AY.106 | 0.003684 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 11 | 11 | B.1.1.28 | 0.003424 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 11 | 11 | B.1.311 | 0.00302 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 8 | 9 | AY.29 | 0.000126 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 9 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 9 | 9 | B.1.298 | 0.019027 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 8 | 8 | 0.444444 | |
ORF1ab/nsp2 | 522 | A522D | gCc | gAc | 7 | 8 | All | 0.000001 |
ORF1ab/nsp2 | 522 | A522P | Gcc | Ccc | 6 | 8 | All | 0.000001 |
ORF1ab/nsp2 | 522 | A522P | GcC | CcT | 2 | 8 | All | 0 |
ORF1ab/nsp2 | 522 | A522D | gCC | gAT | 1 | 8 | All | 0 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 8 | 8 | AY.90 | 0.005476 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 7 | 7 | AY.94 | 0.003099 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 6 | 6 | AY.89 | 0.029412 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 6 | 6 | B.40 | 0.002186 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 2 | 5 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 2 | 5 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcG | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 3 | 5 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 2 | 5 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 522 | A522G | gCC | gGG | 2 | 4 | All | 0 |
ORF1ab/nsp2 | 522 | A522G | gCC | gGT | 1 | 4 | All | 0 |
ORF1ab/nsp2 | 522 | A522G | gCc | gGc | 1 | 4 | All | 0 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 3 | 4 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 4 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 2 | 4 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 2 | 4 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 3 | 4 | AY.45 | 0.000365 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 4 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 2 | 4 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 2 | 4 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 4 | 4 | B.1.564 | 0.001704 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp2 | 522 | A522del2 | GCc | --c | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 2 | 3 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 3 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 3 | 3 | AY.56 | 0.004815 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 3 | 3 | AY.7.2 | 0.001678 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 522 | A522D | gCc | gAc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 522 | A522S | GcC | TcA | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 3 | 3 | B.1.9 | 0.018519 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp2 | 522 | A522K | GCC | AAA | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 522 | A522N | GCC | AAT | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 522 | A522del1 | GCC | -ST | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 522 | A522F | GCc | TTc | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 522 | A522F | GCC | TTT | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 522 | A522del1 | gCc | g-c | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 2 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 2 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp2 | 522 | A522G | gCc | gGc | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 522 | A522G | gCC | gGG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp2 | 522 | A522N | GCC | AAT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp2 | 522 | A522X | GCC | TAG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 522 | A522H | GCc | CAc | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 522 | A522del2 | GCc | --c | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 522 | A522D | gCc | gAc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 522 | A522del2 | GCc | --c | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 522 | A522P | Gcc | Ccc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 522 | A522del1 | GCC | -ST | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 522 | A522G | gCC | gGG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 522 | A522P | Gcc | Ccc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 522 | A522X | GCC | TAG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp2 | 522 | A522P | GcC | CcT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp2 | 522 | A522P | Gcc | Ccc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp2 | 522 | A522K | GCC | AAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 522 | A522del2 | GCc | --c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 522 | A522D | gCC | gAT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 522 | A522del1 | gCc | g-c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 522 | A522P | GcC | CcT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp2 | 522 | A522D | gCc | gAc | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp2 | 522 | A522P | Gcc | Ccc | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcG | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 522 | A522D | gCc | gAc | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp2 | 522 | A522P | Gcc | Ccc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp2 | 522 | A522P | Gcc | Ccc | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 522 | A522F | GCc | TTc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp2 | 522 | A522D | gCc | gAc | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 522 | A522G | gCC | gGT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp2 | 522 | A522K | GCC | AAA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 522 | A522S | GCc | AGc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 522 | A522F | GCC | TTT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 522 | A522H | GCc | CAc | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcT | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 522 | A522V | gCc | gTc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 522 | A522T | Gcc | Acc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 522 | A522S | Gcc | Tcc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 522 | A522del | GCC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp2 | 522 | A522A | gcC | gcA | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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