CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 510 | A510V | A690V | nonsyn | gCt | gTt | 10543 | 10542 | 0.999905 | 2333-2335 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 10542 | 10543 | All | 0.002016 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4823 | 4823 | B.1.1.7 | 0.004318 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 775 | 775 | AU.1 | 0.981013 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 480 | 481 | B.1.617.2 | 0.001807 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 472 | 472 | AY.4 | 0.000735 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 390 | 390 | B.1.177.76 | 0.972569 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 369 | 369 | AY.43 | 0.001635 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 204 | 204 | B.1.177 | 0.002686 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 187 | 187 | AY.25 | 0.001125 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 180 | 180 | AY.103 | 0.001118 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 153 | 153 | B.1.2 | 0.001347 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 147 | 147 | B.1.243 | 0.010229 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 145 | 145 | P.1 | 0.002284 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 92 | 92 | B.1.637 | 0.006723 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 91 | 91 | B.1.1 | 0.001651 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 89 | 89 | AY.3 | 0.000885 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 83 | 83 | B.1 | 0.00076 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 71 | 71 | AY.44 | 0.000432 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 67 | 67 | AY.20 | 0.002604 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 58 | 58 | Q.8 | 0.009565 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 57 | 57 | B.1.240 | 0.012287 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 54 | 54 | B.1.427 | 0.002727 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 52 | 52 | AY.5 | 0.001074 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 50 | 50 | AY.102 | 0.001326 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 50 | 50 | AY.33 | 0.003339 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 48 | 48 | AY.13 | 0.007727 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 45 | 45 | AY.75 | 0.002521 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 42 | 42 | B.1.1.222 | 0.008568 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 40 | 40 | B.1.526 | 0.00094 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 40 | 40 | B.1.617.1 | 0.005159 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 40 | 40 | R.1 | 0.0036 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 34 | 34 | B.1.429 | 0.0008 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 33 | 33 | AY.26 | 0.000934 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 30 | 30 | B.1.36.16 | 0.042735 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 29 | 29 | AY.39 | 0.000717 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 29 | 29 | B.1.596 | 0.002527 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 27 | 27 | B.1.351 | 0.000803 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 22 | 22 | C.37 | 0.002553 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 21 | 21 | B.1.424 | 0.169355 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 21 | 21 | B.1.499 | 0.022059 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 20 | 20 | B.1.1.306 | 0.008768 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 20 | 20 | Q.1 | 0.002527 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 19 | 19 | B.1.1.519 | 0.000755 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 17 | 17 | AY.9.2 | 0.000624 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 16 | 16 | AY.109 | 0.011834 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 16 | 16 | AY.119 | 0.000565 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 16 | 16 | B.1.160 | 0.000499 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 14 | 14 | AY.117 | 0.001183 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 14 | 14 | AY.6 | 0.000576 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 13 | 13 | AY.98.1 | 0.00063 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 12 | 12 | B.1.177.75 | 0.012487 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 11 | 11 | A.2.5 | 0.005489 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 11 | 11 | B.1.1.311 | 0.00394 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 11 | 11 | B.1.1.63 | 0.004244 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 11 | 11 | B.1.588 | 0.010009 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 10 | 10 | AY.46.4 | 0.001645 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 10 | 10 | B.1.177.81 | 0.001893 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 9 | 9 | AY.46 | 0.000937 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 9 | 9 | AY.9 | 0.000608 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 9 | 9 | B.1.1.25 | 0.005117 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 9 | 9 | B.1.1.432 | 0.011392 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 9 | 9 | B.1.258.11 | 0.003567 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 9 | 9 | B.1.628 | 0.003171 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 9 | 9 | P.1.10 | 0.002425 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 8 | 8 | B.1.1.207 | 0.009456 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 7 | 7 | B.1.111 | 0.008226 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 7 | 7 | B.1.36.18 | 0.002941 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 7 | 7 | B.1.422 | 0.005686 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 6 | 6 | AY.77 | 0.006764 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 6 | 6 | AY.78 | 0.009245 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 6 | 6 | AY.84 | 0.002625 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 6 | 6 | AY.94 | 0.002656 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 6 | 6 | B.1.443 | 0.028037 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | AY.37 | 0.00158 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | AY.88 | 0.004421 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | B.1.1.216 | 0.004452 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | B.1.177.45 | 0.001906 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | B.1.177.57 | 0.001405 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | B.1.260 | 0.016722 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | B.1.438.1 | 0.000536 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | C.35 | 0.00387 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | AY.2 | 0.001425 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | B.1.1.153 | 0.004381 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | B.1.177.15 | 0.002524 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 4 | 4 | P.1.9 | 0.019231 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | B.1.1.220 | 0.005576 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | B.1.1.243 | 0.012245 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AE.4 | 0.086957 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.1.286 | 0.005797 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.177.9 | 0.002663 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.214.1 | 0.04 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.377 | 0.009132 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.516 | 0.003914 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | B.1.631 | 0.006734 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.120 | 0.033333 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.125 | 0.010204 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.120 | 0.007692 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.167 | 0.007812 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.177.38 | 0.010417 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.407 | 0.035714 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.562 | 0.018519 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp2 | 510 | A510V | gCt | gTt | 1 | 1 | Y.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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