CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 509

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2509C509GC689GnonsynTgtGgt28028012330-2332
ORF1ab/nsp2509C509YC689YnonsyntGttAt1081070.9907412330-2332
ORF1ab/nsp2509C509YC689YnonsyntGTtAC10810.009259262330-2332
ORF1ab/nsp2509C509delC689deldelTGT---737312330-2332
ORF1ab/nsp2509C509CC689CsyntgTtgC727212330-2332
ORF1ab/nsp2509C509FC689FnonsyntGttTt343412330-2332
ORF1ab/nsp2509C509SC689SnonsynTgtAgt19100.5263162330-2332
ORF1ab/nsp2509C509SC689SnonsyntGttCt1960.3157892330-2332
ORF1ab/nsp2509C509SC689SnonsyntGTtCC1920.1052632330-2332
ORF1ab/nsp2509C509SC689SnonsyntGTtCG1910.05263162330-2332
ORF1ab/nsp2509C509RC689RnonsynTgtCgt18170.9444442330-2332
ORF1ab/nsp2509C509RC689RnonsynTgTCgA1810.05555562330-2332
ORF1ab/nsp2509C509WC689WnonsyntgTtgG121212330-2332
ORF1ab/nsp2509C509del1C689del1deltGtt-t630.52330-2332
ORF1ab/nsp2509C509del1C689del1delTGt-At610.1666672330-2332
ORF1ab/nsp2509C509del1C689del1delTGTAA-610.1666672330-2332
ORF1ab/nsp2509C509del1C689del1delTgt-gt610.1666672330-2332
ORF1ab/nsp2509C509HC689HnonsynTGTCAC2212330-2332
ORF1ab/nsp2509C509XC689XnonsyntGTtAA2212330-2332
ORF1ab/nsp2509C509DC689DnonsynTGtGAt1112330-2332
ORF1ab/nsp2509C509KC689KnonsynTGTAAA1112330-2332
ORF1ab/nsp2509C509VC689VnonsynTGTGTA1112330-2332
ORF1ab/nsp2509C509del2C689del2delTGt--t1112330-2332
ORF1ab/nsp2509C509NC689NnonsynTGTAAC1112330-2332

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2509C509GTgtGgt280280All0.000054
ORF1ab/nsp2509C509GTgtGgt267267B.1.5740.574194
ORF1ab/nsp2509C509YtGttAt107108All0.00002
ORF1ab/nsp2509C509YtGTtAC1108All0
ORF1ab/nsp2509C509delTGT---7373All0.000014
ORF1ab/nsp2509C509CtgTtgC7272All0.000014
ORF1ab/nsp2509C509FtGttTt3434All0.000007
ORF1ab/nsp2509C509CtgTtgC2929B.1.20.000255
ORF1ab/nsp2509C509YtGttAt2626B.1.2430.001809
ORF1ab/nsp2509C509delTGT---2020B.1.1.70.000018
ORF1ab/nsp2509C509STgtAgt1019All0.000002
ORF1ab/nsp2509C509StGttCt619All0.000001
ORF1ab/nsp2509C509StGTtCC219All0
ORF1ab/nsp2509C509StGTtCG119All0
ORF1ab/nsp2509C509RTgtCgt1718All0.000003
ORF1ab/nsp2509C509RTgTCgA118All0
ORF1ab/nsp2509C509WtgTtgG1212All0.000002
ORF1ab/nsp2509C509CtgTtgC99B.10.000082
ORF1ab/nsp2509C509YtGttAt88AY.40.000012
ORF1ab/nsp2509C509YtGttAt88B.1.1.70.000007
ORF1ab/nsp2509C509delTGT---660.333333
ORF1ab/nsp2509C509del1tGtt-t36All0.000001
ORF1ab/nsp2509C509del1TGTAA-16All0
ORF1ab/nsp2509C509del1Tgt-gt16All0
ORF1ab/nsp2509C509del1TGt-At16All0
ORF1ab/nsp2509C509delTGT---66B.10.000055
ORF1ab/nsp2509C509GTgtGgt66B.10.000055
ORF1ab/nsp2509C509YtGttAt66B.10.000055
ORF1ab/nsp2509C509CtgTtgC55AY.1030.000031
ORF1ab/nsp2509C509CtgTtgC55B.1.617.20.000019
ORF1ab/nsp2509C509YtGttAt45B.1.617.20.000015
ORF1ab/nsp2509C509YtGTtAC15B.1.617.20.000004
ORF1ab/nsp2509C509FtGttTt44AY.4.40.001637
ORF1ab/nsp2509C509YtGttAt44AY.430.000018
ORF1ab/nsp2509C509RTgtCgt34AY.440.000018
ORF1ab/nsp2509C509RTgTCgA14AY.440.000006
ORF1ab/nsp2509C509CtgTtgC44AY.470.000124
ORF1ab/nsp2509C509StGttCt24B.10.000018
ORF1ab/nsp2509C509STgtAgt24B.10.000018
ORF1ab/nsp2509C509YtGttAt44B.1.3510.000119
ORF1ab/nsp2509C509delTGT---44B.1.617.20.000015
ORF1ab/nsp2509C509FtGttTt44B.1.617.20.000015
ORF1ab/nsp2509C509YtGttAt33AY.260.000085
ORF1ab/nsp2509C509delTGT---33AY.430.000013
ORF1ab/nsp2509C509FtGttTt33AY.440.000018
ORF1ab/nsp2509C509YtGttAt33AY.98.10.000145
ORF1ab/nsp2509C509delTGT---33B.1.1.330.001263
ORF1ab/nsp2509C509YtGttAt33B.1.20.000026
ORF1ab/nsp2509C509WtgTtgG33B.1.2400.000647
ORF1ab/nsp2509C509YtGttAt33B.1.4680.017143
ORF1ab/nsp2509C509YtGttAt33B.1.5950.000783
ORF1ab/nsp2509C509XtGTtAA22All0
ORF1ab/nsp2509C509HTGTCAC22All0
ORF1ab/nsp2509C509YtGttAt22AY.1030.000012
ORF1ab/nsp2509C509CtgTtgC22AY.250.000012
ORF1ab/nsp2509C509FtGttTt22AY.250.000012
ORF1ab/nsp2509C509YtGttAt22AY.30.00002
ORF1ab/nsp2509C509GTgtGgt22AY.40.000003
ORF1ab/nsp2509C509CtgTtgC22AY.40.000003
ORF1ab/nsp2509C509YtGttAt22AY.440.000012
ORF1ab/nsp2509C509CtgTtgC22AY.940.000885
ORF1ab/nsp2509C509delTGT---22AY.990.002099
ORF1ab/nsp2509C509RTgtCgt22B.10.000018
ORF1ab/nsp2509C509FtGttTt22B.10.000018
ORF1ab/nsp2509C509delTGT---22B.1.10.000036
ORF1ab/nsp2509C509delTGT---22B.1.1.3480.001592
ORF1ab/nsp2509C509WtgTtgG22B.1.1.70.000002
ORF1ab/nsp2509C509StGttCt12B.1.1.70.000001
ORF1ab/nsp2509C509STgtAgt12B.1.1.70.000001
ORF1ab/nsp2509C509CtgTtgC22B.1.1770.000026
ORF1ab/nsp2509C509FtGttTt22B.1.20.000018
ORF1ab/nsp2509C509RTgtCgt22B.1.20.000018
ORF1ab/nsp2509C509YtGttAt22B.1.2790.001027
ORF1ab/nsp2509C509YtGttAt22B.1.360.000292
ORF1ab/nsp2509C509delTGT---22B.1.4240.016129
ORF1ab/nsp2509C509delTGT---22B.1.4290.000047
ORF1ab/nsp2509C509YtGttAt22B.1.4590.008163
ORF1ab/nsp2509C509YtGttAt22B.1.5240.002813
ORF1ab/nsp2509C509STgtAgt12B.1.617.20.000004
ORF1ab/nsp2509C509StGTtCC12B.1.617.20.000004
ORF1ab/nsp2509C509del1tGtt-t22B.1.6270.00404
ORF1ab/nsp2509C509delTGT---22N.60.014184
ORF1ab/nsp2509C509FtGttTt11A.10.000282
ORF1ab/nsp2509C509FtGttTt11A.20.000662
ORF1ab/nsp2509C509STgtAgt11A.2.40.003367
ORF1ab/nsp2509C509YtGttAt11A.290.005319
ORF1ab/nsp2509C509VTGTGTA11All0
ORF1ab/nsp2509C509KTGTAAA11All0
ORF1ab/nsp2509C509del2TGt--t11All0
ORF1ab/nsp2509C509NTGTAAC11All0
ORF1ab/nsp2509C509DTGtGAt11All0
ORF1ab/nsp2509C509YtGttAt11AY.1020.000027
ORF1ab/nsp2509C509STgtAgt11AY.1030.000006
ORF1ab/nsp2509C509del1TGTAA-11AY.1030.000006
ORF1ab/nsp2509C509delTGT---11AY.1030.000006
ORF1ab/nsp2509C509delTGT---11AY.1080.001103
ORF1ab/nsp2509C509WtgTtgG11AY.1130.000142
ORF1ab/nsp2509C509StGTtCG11AY.1130.000142
ORF1ab/nsp2509C509RTgtCgt11AY.1140.000231
ORF1ab/nsp2509C509GTgtGgt11AY.1170.000085
ORF1ab/nsp2509C509YtGttAt11AY.1180.000063
ORF1ab/nsp2509C509FtGttTt11AY.1190.000035
ORF1ab/nsp2509C509YtGttAt11AY.1190.000035
ORF1ab/nsp2509C509XtGTtAA11AY.120.10.000321
ORF1ab/nsp2509C509CtgTtgC11AY.130.000161
ORF1ab/nsp2509C509RTgtCgt11AY.230.00007
ORF1ab/nsp2509C509WtgTtgG11AY.250.000006
ORF1ab/nsp2509C509YtGttAt11AY.250.000006
ORF1ab/nsp2509C509YtGttAt11AY.290.000016
ORF1ab/nsp2509C509delTGT---11AY.29.10.000221
ORF1ab/nsp2509C509delTGT---11AY.30.00001
ORF1ab/nsp2509C509RTgtCgt11AY.30.00001
ORF1ab/nsp2509C509WtgTtgG11AY.330.000067
ORF1ab/nsp2509C509delTGT---11AY.390.000025
ORF1ab/nsp2509C509StGttCt11AY.390.000025
ORF1ab/nsp2509C509FtGttTt11AY.40.000002
ORF1ab/nsp2509C509delTGT---11AY.40.000002
ORF1ab/nsp2509C509RTgtCgt11AY.420.00004
ORF1ab/nsp2509C509YtGttAt11AY.420.00004
ORF1ab/nsp2509C509WtgTtgG11AY.430.000004
ORF1ab/nsp2509C509RTgtCgt11AY.430.000004
ORF1ab/nsp2509C509FtGttTt11AY.430.000004
ORF1ab/nsp2509C509GTgtGgt11AY.440.000006
ORF1ab/nsp2509C509CtgTtgC11AY.440.000006
ORF1ab/nsp2509C509delTGT---11AY.440.000006
ORF1ab/nsp2509C509HTGTCAC11AY.46.60.000072
ORF1ab/nsp2509C509YtGttAt11AY.46.60.000072
ORF1ab/nsp2509C509STgtAgt11AY.480.000465
ORF1ab/nsp2509C509FtGttTt11AY.50.000021
ORF1ab/nsp2509C509YtGttAt11AY.60.000041
ORF1ab/nsp2509C509RTgtCgt11AY.60.000041
ORF1ab/nsp2509C509FtGttTt11AY.610.000105
ORF1ab/nsp2509C509delTGT---11AY.670.000464
ORF1ab/nsp2509C509StGTtCC11AY.750.000056
ORF1ab/nsp2509C509RTgtCgt11AY.750.000056
ORF1ab/nsp2509C509delTGT---11AY.840.000437
ORF1ab/nsp2509C509delTGT---11AY.9.20.000037
ORF1ab/nsp2509C509FtGttTt11AY.9.20.000037
ORF1ab/nsp2509C509StGttCt11AY.98.10.000048
ORF1ab/nsp2509C509WtgTtgG11AY.99.20.000092
ORF1ab/nsp2509C509del1TGt-At11B.10.000009
ORF1ab/nsp2509C509WtgTtgG11B.10.000009
ORF1ab/nsp2509C509FtGttTt11B.1.10.000018
ORF1ab/nsp2509C509KTGTAAA11B.1.10.000018
ORF1ab/nsp2509C509CtgTtgC11B.1.1.1700.001247
ORF1ab/nsp2509C509YtGttAt11B.1.1.2940.001266
ORF1ab/nsp2509C509delTGT---11B.1.1.4160.000905
ORF1ab/nsp2509C509CtgTtgC11B.1.1.5190.00004
ORF1ab/nsp2509C509RTgtCgt11B.1.1.5230.001563
ORF1ab/nsp2509C509delTGT---11B.1.1.5230.001563
ORF1ab/nsp2509C509DTGtGAt11B.1.1.70.000001
ORF1ab/nsp2509C509NTGTAAC11B.1.1.70.000001
ORF1ab/nsp2509C509VTGTGTA11B.1.1.70.000001
ORF1ab/nsp2509C509CtgTtgC11B.1.1.70.000001
ORF1ab/nsp2509C509del1Tgt-gt11B.1.1.70.000001
ORF1ab/nsp2509C509GTgtGgt11B.1.1.70.000001
ORF1ab/nsp2509C509FtGttTt11B.1.1.70.000001
ORF1ab/nsp2509C509YtGttAt11B.1.1600.000031
ORF1ab/nsp2509C509CtgTtgC11B.1.1600.000031
ORF1ab/nsp2509C509HTGTCAC11B.1.1600.000031
ORF1ab/nsp2509C509GTgtGgt11B.1.160.220.006757
ORF1ab/nsp2509C509RTgtCgt11B.1.1770.000013
ORF1ab/nsp2509C509YtGttAt11B.1.1770.000013
ORF1ab/nsp2509C509delTGT---11B.1.1770.000013
ORF1ab/nsp2509C509FtGttTt11B.1.1770.000013
ORF1ab/nsp2509C509YtGttAt11B.1.177.40.000211
ORF1ab/nsp2509C509STgtAgt11B.1.177.530.002392
ORF1ab/nsp2509C509CtgTtgC11B.1.177.870.000728
ORF1ab/nsp2509C509delTGT---11B.1.1790.003759
ORF1ab/nsp2509C509WtgTtgG11B.1.20.000009
ORF1ab/nsp2509C509FtGttTt11B.1.2210.000071
ORF1ab/nsp2509C509StGttCt11B.1.2580.000067
ORF1ab/nsp2509C509FtGttTt11B.1.3510.00003
ORF1ab/nsp2509C509YtGttAt11B.1.36.190.009259
ORF1ab/nsp2509C509RTgtCgt11B.1.36.290.000517
ORF1ab/nsp2509C509STgtAgt11B.1.4040.001302
ORF1ab/nsp2509C509delTGT---11B.1.416.10.001563
ORF1ab/nsp2509C509STgtAgt11B.1.4270.00005
ORF1ab/nsp2509C509CtgTtgC11B.1.4380.006536
ORF1ab/nsp2509C509YtGttAt11B.1.438.10.000107
ORF1ab/nsp2509C509CtgTtgC11B.1.5170.000427
ORF1ab/nsp2509C509FtGttTt11B.1.5250.000113
ORF1ab/nsp2509C509delTGT---11B.1.5610.000397
ORF1ab/nsp2509C509GTgtGgt11B.1.5960.000087
ORF1ab/nsp2509C509del1tGtt-t11B.1.617.20.000004
ORF1ab/nsp2509C509del2TGt--t11B.1.617.20.000004
ORF1ab/nsp2509C509XtGTtAA11B.1.617.20.000004
ORF1ab/nsp2509C509delTGT---11B.570.015152
ORF1ab/nsp2509C509CtgTtgC11C.360.000911
ORF1ab/nsp2509C509FtGttTt11C.370.000116
ORF1ab/nsp2509C509FtGttTt11D.20.000075
ORF1ab/nsp2509C509CtgTtgC11P.10.000016
ORF1ab/nsp2509C509delTGT---11P.10.000016
ORF1ab/nsp2509C509YtGttAt11P.10.000016
ORF1ab/nsp2509C509FtGttTt11P.10.000016
ORF1ab/nsp2509C509YtGttAt11P.1.120.000484
ORF1ab/nsp2509C509YtGttAt11P.1.160.000374
ORF1ab/nsp2509C509CtgTtgC11P.1.160.000374
ORF1ab/nsp2509C509delTGT---11P.20.000187