CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 505

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2505F505SF685SnonsyntTttCt6926880.994222318-2320
ORF1ab/nsp2505F505SF685SnonsyntTTtCC69220.002890172318-2320
ORF1ab/nsp2505F505SF685SnonsynTTtAGt69210.001445092318-2320
ORF1ab/nsp2505F505SF685SnonsynTTTAGC69210.001445092318-2320
ORF1ab/nsp2505F505IF685InonsynTttAtt6556540.9984732318-2320
ORF1ab/nsp2505F505IF685InonsynTtTAtA65510.001526722318-2320
ORF1ab/nsp2505F505LF685LnonsynTttCtt4984700.9437752318-2320
ORF1ab/nsp2505F505LF685LnonsynttTttA498160.03212852318-2320
ORF1ab/nsp2505F505LF685LnonsynttTttG498110.02208842318-2320
ORF1ab/nsp2505F505LF685LnonsynTtTCtC49810.002008032318-2320
ORF1ab/nsp2505F505FF685FsynttTttC878712318-2320
ORF1ab/nsp2505F505delF685deldelTTT---747412318-2320
ORF1ab/nsp2505F505del1F685del1delTtt-tt26240.9230772318-2320
ORF1ab/nsp2505F505del1F685del1delTTt-At2610.03846152318-2320
ORF1ab/nsp2505F505del1F685del1delTTT-NN2610.03846152318-2320
ORF1ab/nsp2505F505CF685CnonsyntTttGt24220.9166672318-2320
ORF1ab/nsp2505F505CF685CnonsyntTTtGC2420.08333332318-2320
ORF1ab/nsp2505F505VF685VnonsynTttGtt222212318-2320
ORF1ab/nsp2505F505YF685YnonsyntTttAt14110.7857142318-2320
ORF1ab/nsp2505F505YF685YnonsyntTTtAC1430.2142862318-2320
ORF1ab/nsp2505F505NF685NnonsynTTtAAt1090.92318-2320
ORF1ab/nsp2505F505NF685NnonsynTTTAAC1010.12318-2320
ORF1ab/nsp2505F505XF685XnonsyntTTtAA420.52318-2320
ORF1ab/nsp2505F505XF685XnonsyntTTtGA420.52318-2320
ORF1ab/nsp2505F505del2F685del2delTTTC--320.6666672318-2320
ORF1ab/nsp2505F505del2F685del2delTTt--t310.3333332318-2320
ORF1ab/nsp2505F505PF685PnonsynTTtCCt310.3333332318-2320
ORF1ab/nsp2505F505PF685PnonsynTTTCCC310.3333332318-2320
ORF1ab/nsp2505F505PF685PnonsynTTTCCA310.3333332318-2320
ORF1ab/nsp2505F505TF685TnonsynTTTACC1112318-2320
ORF1ab/nsp2505F505GF685GnonsynTTTGGC1112318-2320
ORF1ab/nsp2505F505AF685AnonsynTTTGCC1112318-2320
ORF1ab/nsp2505F505DF685DnonsynTTTGAC1112318-2320

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2505F505StTttCt688692All0.000132
ORF1ab/nsp2505F505StTTtCC2692All0
ORF1ab/nsp2505F505STTTAGC1692All0
ORF1ab/nsp2505F505STTtAGt1692All0
ORF1ab/nsp2505F505ITttAtt654655All0.000125
ORF1ab/nsp2505F505ITtTAtA1655All0
ORF1ab/nsp2505F505LTttCtt470498All0.00009
ORF1ab/nsp2505F505LttTttA16498All0.000003
ORF1ab/nsp2505F505LttTttG11498All0.000002
ORF1ab/nsp2505F505LTtTCtC1498All0
ORF1ab/nsp2505F505StTttCt436436B.1.36.390.966741
ORF1ab/nsp2505F505ITttAtt210210AY.1020.005568
ORF1ab/nsp2505F505ITttAtt203203B.1.617.20.000764
ORF1ab/nsp2505F505StTttCt193193AY.39.10.007645
ORF1ab/nsp2505F505LTttCtt117120AY.40.000182
ORF1ab/nsp2505F505LttTttG3120AY.40.000005
ORF1ab/nsp2505F505ITttAtt8989B.1.20.000784
ORF1ab/nsp2505F505FttTttC8787All0.000017
ORF1ab/nsp2505F505LTttCtt7881AY.4.20.001692
ORF1ab/nsp2505F505LttTttA381AY.4.20.000065
ORF1ab/nsp2505F505delTTT---7474All0.000014
ORF1ab/nsp2505F505LTttCtt6363AY.430.000279
ORF1ab/nsp2505F505FttTttC4545AY.1030.000279
ORF1ab/nsp2505F505del1Ttt-tt2426All0.000005
ORF1ab/nsp2505F505del1TTt-At126All0
ORF1ab/nsp2505F505del1TTT-NN126All0
ORF1ab/nsp2505F505ITttAtt2525AY.390.000618
ORF1ab/nsp2505F505CtTttGt2224All0.000004
ORF1ab/nsp2505F505CtTTtGC224All0
ORF1ab/nsp2505F505VTttGtt2222All0.000004
ORF1ab/nsp2505F505LTttCtt2222B.1.617.20.000083
ORF1ab/nsp2505F505LTttCtt1919AY.330.001269
ORF1ab/nsp2505F505delTTT---1919B.1.1.70.000017
ORF1ab/nsp2505F505LTttCtt1717P.10.000268
ORF1ab/nsp2505F505LTttCtt1616AY.440.000097
ORF1ab/nsp2505F505YtTttAt1114All0.000002
ORF1ab/nsp2505F505YtTTtAC314All0.000001
ORF1ab/nsp2505F505LTttCtt814AY.1030.00005
ORF1ab/nsp2505F505LttTttA514AY.1030.000031
ORF1ab/nsp2505F505LttTttG114AY.1030.000006
ORF1ab/nsp2505F505LTttCtt1314B.1.10.000236
ORF1ab/nsp2505F505LttTttA114B.1.10.000018
ORF1ab/nsp2505F505CtTttGt1313AY.40.00002
ORF1ab/nsp2505F505LTttCtt1313B.1.5260.000306
ORF1ab/nsp2505F505ITttAtt1212AY.1160.003441
ORF1ab/nsp2505F505ITttAtt1212AY.440.000073
ORF1ab/nsp2505F505LTttCtt1111AY.1020.000292
ORF1ab/nsp2505F505LTttCtt1011B.1.1.70.000009
ORF1ab/nsp2505F505LttTttA111B.1.1.70.000001
ORF1ab/nsp2505F505NTTtAAt910All0.000002
ORF1ab/nsp2505F505NTTTAAC110All0
ORF1ab/nsp2505F505ITttAtt910AY.40.000014
ORF1ab/nsp2505F505ITtTAtA110AY.40.000002
ORF1ab/nsp2505F505StTttCt1010B.1.36.170.004941
ORF1ab/nsp2505F505ITttAtt99B.1.1.70.000008
ORF1ab/nsp2505F505ITttAtt88AY.290.000126
ORF1ab/nsp2505F505ITttAtt77AY.1200.00026
ORF1ab/nsp2505F505StTttCt77AY.260.000198
ORF1ab/nsp2505F505ITttAtt77AY.430.000031
ORF1ab/nsp2505F505ITttAtt77AY.46.20.004447
ORF1ab/nsp2505F505LTttCtt77B.1.1.2820.081395
ORF1ab/nsp2505F505LTttCtt67B.1.20.000053
ORF1ab/nsp2505F505LttTttA17B.1.20.000009
ORF1ab/nsp2505F505delTTT---660.333333
ORF1ab/nsp2505F505LttTttG66AY.1180.000376
ORF1ab/nsp2505F505StTttCt66B.1.10.000109
ORF1ab/nsp2505F505FttTttC66B.1.1.2140.000333
ORF1ab/nsp2505F505del1Ttt-tt66B.1.20.000053
ORF1ab/nsp2505F505LTttCtt66B.1.2580.000399
ORF1ab/nsp2505F505ITttAtt55AY.230.000349
ORF1ab/nsp2505F505LTttCtt55AY.250.00003
ORF1ab/nsp2505F505FttTttC55AY.40.000008
ORF1ab/nsp2505F505StTttCt55AY.40.000008
ORF1ab/nsp2505F505delTTT---55B.10.000046
ORF1ab/nsp2505F505StTttCt55B.10.000046
ORF1ab/nsp2505F505FttTttC55B.1.360.00073
ORF1ab/nsp2505F505StTttCt55B.1.617.20.000019
ORF1ab/nsp2505F505delTTT---55B.1.617.20.000019
ORF1ab/nsp2505F505XtTTtGA24All0
ORF1ab/nsp2505F505XtTTtAA24All0
ORF1ab/nsp2505F505ITttAtt44AY.1170.000338
ORF1ab/nsp2505F505VTttGtt44AY.40.000006
ORF1ab/nsp2505F505VTttGtt44AY.440.000024
ORF1ab/nsp2505F505del1Ttt-tt44AY.440.000024
ORF1ab/nsp2505F505LTttCtt44AY.750.000224
ORF1ab/nsp2505F505LTttCtt44AY.9.10.000335
ORF1ab/nsp2505F505ITttAtt44AY.920.001149
ORF1ab/nsp2505F505ITttAtt44B.10.000037
ORF1ab/nsp2505F505ITttAtt44B.1.10.000073
ORF1ab/nsp2505F505StTttCt44B.1.1.70.000004
ORF1ab/nsp2505F505del1Ttt-tt34B.1.1.70.000003
ORF1ab/nsp2505F505del1TTT-NN14B.1.1.70.000001
ORF1ab/nsp2505F505StTttCt44B.1.1770.000053
ORF1ab/nsp2505F505LTttCtt44B.1.1770.000053
ORF1ab/nsp2505F505StTttCt44B.1.2580.000266
ORF1ab/nsp2505F505StTttCt44B.1.5510.005161
ORF1ab/nsp2505F505del2TTTC--23All0
ORF1ab/nsp2505F505PTTtCCt13All0
ORF1ab/nsp2505F505PTTTCCA13All0
ORF1ab/nsp2505F505del2TTt--t13All0
ORF1ab/nsp2505F505PTTTCCC13All0
ORF1ab/nsp2505F505LttTttA33AY.200.000117
ORF1ab/nsp2505F505LTttCtt33AY.60.000123
ORF1ab/nsp2505F505LTttCtt23AY.980.000158
ORF1ab/nsp2505F505LttTttA13AY.980.000079
ORF1ab/nsp2505F505delTTT---33B.1.1.330.001263
ORF1ab/nsp2505F505VTttGtt33B.1.1.70.000003
ORF1ab/nsp2505F505FttTttC33B.1.1.70.000003
ORF1ab/nsp2505F505YtTttAt23B.1.1.70.000002
ORF1ab/nsp2505F505XtTTtGA23B.1.1.70.000002
ORF1ab/nsp2505F505XtTTtAA13B.1.1.70.000001
ORF1ab/nsp2505F505YtTTtAC13B.1.1.70.000001
ORF1ab/nsp2505F505ITttAtt33B.1.160.150.014851
ORF1ab/nsp2505F505FttTttC33B.1.20.000026
ORF1ab/nsp2505F505VTttGtt33B.1.4290.000071
ORF1ab/nsp2505F505FttTttC33B.1.564.10.004732
ORF1ab/nsp2505F505del2TTTC--220.111111
ORF1ab/nsp2505F505LTttCtt22AY.1110.000366
ORF1ab/nsp2505F505CtTttGt12AY.1130.000142
ORF1ab/nsp2505F505CtTTtGC12AY.1130.000142
ORF1ab/nsp2505F505YtTTtAC12AY.1130.000142
ORF1ab/nsp2505F505NTTTAAC12AY.1130.000142
ORF1ab/nsp2505F505STTtAGt12AY.1130.000142
ORF1ab/nsp2505F505STTTAGC12AY.1130.000142
ORF1ab/nsp2505F505NTTtAAt12AY.1130.000142
ORF1ab/nsp2505F505YtTttAt12AY.1130.000142
ORF1ab/nsp2505F505ITttAtt22AY.1140.000462
ORF1ab/nsp2505F505LTttCtt22AY.1160.000574
ORF1ab/nsp2505F505ITttAtt22AY.190.002281
ORF1ab/nsp2505F505ITttAtt22AY.250.000012
ORF1ab/nsp2505F505VTttGtt22AY.250.000012
ORF1ab/nsp2505F505LTttCtt22AY.290.000032
ORF1ab/nsp2505F505LTttCtt22AY.390.000049
ORF1ab/nsp2505F505ITttAtt22AY.420.00008
ORF1ab/nsp2505F505delTTT---22AY.430.000009
ORF1ab/nsp2505F505FttTttC22AY.440.000012
ORF1ab/nsp2505F505delTTT---22AY.440.000012
ORF1ab/nsp2505F505ITttAtt22AY.460.000208
ORF1ab/nsp2505F505ITttAtt22AY.50.000041
ORF1ab/nsp2505F505StTttCt12AY.520.000814
ORF1ab/nsp2505F505PTTtCCt12AY.520.000814
ORF1ab/nsp2505F505LTtTCtC12AY.520.000814
ORF1ab/nsp2505F505StTTtCC12AY.520.000814
ORF1ab/nsp2505F505PTTTCCC12AY.520.000814
ORF1ab/nsp2505F505LTttCtt12AY.520.000814
ORF1ab/nsp2505F505LttTttG12AY.75.10.00018
ORF1ab/nsp2505F505LTttCtt12AY.75.10.00018
ORF1ab/nsp2505F505delTTT---22AY.990.002099
ORF1ab/nsp2505F505LTttCtt22B.10.000018
ORF1ab/nsp2505F505FttTttC22B.1.10.000036
ORF1ab/nsp2505F505delTTT---22B.1.10.000036
ORF1ab/nsp2505F505LTttCtt22B.1.1.2220.000408
ORF1ab/nsp2505F505delTTT---22B.1.1.3480.001592
ORF1ab/nsp2505F505CtTttGt22B.1.1.70.000002
ORF1ab/nsp2505F505NTTtAAt22B.1.1.70.000002
ORF1ab/nsp2505F505ITttAtt22B.1.1600.000062
ORF1ab/nsp2505F505FttTttC22B.1.1770.000026
ORF1ab/nsp2505F505LTttCtt22B.1.177.860.000367
ORF1ab/nsp2505F505YtTttAt22B.1.20.000018
ORF1ab/nsp2505F505NTTtAAt22B.1.20.000018
ORF1ab/nsp2505F505LTttCtt22B.1.3510.000059
ORF1ab/nsp2505F505LTttCtt22B.1.360.000292
ORF1ab/nsp2505F505delTTT---22B.1.4240.016129
ORF1ab/nsp2505F505delTTT---22B.1.4290.000047
ORF1ab/nsp2505F505LTttCtt22B.1.6210.000177
ORF1ab/nsp2505F505ITttAtt22C.370.000232
ORF1ab/nsp2505F505delTTT---22N.60.014184
ORF1ab/nsp2505F505CtTttGt11A.30.002096
ORF1ab/nsp2505F505LTttCtt11AD.20.000219
ORF1ab/nsp2505F505DTTTGAC11All0
ORF1ab/nsp2505F505ATTTGCC11All0
ORF1ab/nsp2505F505GTTTGGC11All0
ORF1ab/nsp2505F505TTTTACC11All0
ORF1ab/nsp2505F505delTTT---11AY.1030.000006
ORF1ab/nsp2505F505ITttAtt11AY.1030.000006
ORF1ab/nsp2505F505ITttAtt11AY.1050.000643
ORF1ab/nsp2505F505ITttAtt11AY.1060.000335
ORF1ab/nsp2505F505FttTttC11AY.1060.000335
ORF1ab/nsp2505F505delTTT---11AY.1080.001103
ORF1ab/nsp2505F505FttTttC11AY.1140.000231
ORF1ab/nsp2505F505LTttCtt11AY.1170.000085
ORF1ab/nsp2505F505YtTttAt11AY.1200.000037
ORF1ab/nsp2505F505FttTttC11AY.1210.000135
ORF1ab/nsp2505F505VTttGtt11AY.140.000088
ORF1ab/nsp2505F505CtTttGt11AY.210.001898
ORF1ab/nsp2505F505delTTT---11AY.250.000006
ORF1ab/nsp2505F505del1Ttt-tt11AY.250.000006
ORF1ab/nsp2505F505FttTttC11AY.260.000028
ORF1ab/nsp2505F505LTttCtt11AY.270.000065
ORF1ab/nsp2505F505delTTT---11AY.29.10.000221
ORF1ab/nsp2505F505ITttAtt11AY.30.00001
ORF1ab/nsp2505F505FttTttC11AY.30.00001
ORF1ab/nsp2505F505VTttGtt11AY.30.00001
ORF1ab/nsp2505F505LTttCtt11AY.30.00001
ORF1ab/nsp2505F505StTttCt11AY.370.000316
ORF1ab/nsp2505F505delTTT---11AY.390.000025
ORF1ab/nsp2505F505delTTT---11AY.40.000002
ORF1ab/nsp2505F505YtTttAt11AY.40.000002
ORF1ab/nsp2505F505LTttCtt11AY.4.2.10.000149
ORF1ab/nsp2505F505StTttCt11AY.430.000004
ORF1ab/nsp2505F505LTttCtt11AY.450.000122
ORF1ab/nsp2505F505LTttCtt11AY.460.000104
ORF1ab/nsp2505F505ITttAtt11AY.46.40.000165
ORF1ab/nsp2505F505CtTTtGC11AY.46.60.000072
ORF1ab/nsp2505F505StTTtCC11AY.46.60.000072
ORF1ab/nsp2505F505YtTTtAC11AY.46.60.000072
ORF1ab/nsp2505F505DTTTGAC11AY.46.60.000072
ORF1ab/nsp2505F505ATTTGCC11AY.46.60.000072
ORF1ab/nsp2505F505GTTTGGC11AY.46.60.000072
ORF1ab/nsp2505F505VTttGtt11AY.50.000021
ORF1ab/nsp2505F505LTttCtt11AY.50.000021
ORF1ab/nsp2505F505FttTttC11AY.520.000814
ORF1ab/nsp2505F505del1Ttt-tt11AY.540.000095
ORF1ab/nsp2505F505VTttGtt11AY.540.000095
ORF1ab/nsp2505F505YtTttAt11AY.580.000907
ORF1ab/nsp2505F505NTTtAAt11AY.580.000907
ORF1ab/nsp2505F505ITttAtt11AY.580.000907
ORF1ab/nsp2505F505StTttCt11AY.610.000105
ORF1ab/nsp2505F505delTTT---11AY.670.000464
ORF1ab/nsp2505F505ITttAtt11AY.670.000464
ORF1ab/nsp2505F505LTttCtt11AY.70.000196
ORF1ab/nsp2505F505delTTT---11AY.750.000056
ORF1ab/nsp2505F505ITttAtt11AY.750.000056
ORF1ab/nsp2505F505delTTT---11AY.840.000437
ORF1ab/nsp2505F505LTttCtt11AY.840.000437
ORF1ab/nsp2505F505ITttAtt11AY.890.004902
ORF1ab/nsp2505F505delTTT---11AY.9.20.000037
ORF1ab/nsp2505F505del1Ttt-tt11AY.9.20.000037
ORF1ab/nsp2505F505ITttAtt11AY.900.000684
ORF1ab/nsp2505F505ITttAtt11AY.930.000273
ORF1ab/nsp2505F505LTttCtt11AY.950.000761
ORF1ab/nsp2505F505ITttAtt11AY.950.000761
ORF1ab/nsp2505F505ITttAtt11AY.980.000079
ORF1ab/nsp2505F505delTTT---11AY.98.10.000048
ORF1ab/nsp2505F505del1Ttt-tt11B.1.10.000018
ORF1ab/nsp2505F505NTTtAAt11B.1.10.000018
ORF1ab/nsp2505F505XtTTtAA11B.1.10.000018
ORF1ab/nsp2505F505LTttCtt11B.1.1.10.000327
ORF1ab/nsp2505F505NTTtAAt11B.1.1.3700.012658
ORF1ab/nsp2505F505del1Ttt-tt11B.1.1.3770.001381
ORF1ab/nsp2505F505delTTT---11B.1.1.4160.000905
ORF1ab/nsp2505F505CtTttGt11B.1.1.4340.000349
ORF1ab/nsp2505F505FttTttC11B.1.1.5190.00004
ORF1ab/nsp2505F505delTTT---11B.1.1.5230.001563
ORF1ab/nsp2505F505del2TTt--t11B.1.1.70.000001
ORF1ab/nsp2505F505PTTTCCA11B.1.1.70.000001
ORF1ab/nsp2505F505LTttCtt11B.1.1.700.000341
ORF1ab/nsp2505F505VTttGtt11B.1.1040.00369
ORF1ab/nsp2505F505LTttCtt11B.1.1600.000031
ORF1ab/nsp2505F505YtTttAt11B.1.1600.000031
ORF1ab/nsp2505F505NTTtAAt11B.1.160.140.002119
ORF1ab/nsp2505F505YtTttAt11B.1.160.140.002119
ORF1ab/nsp2505F505ITttAtt11B.1.160.140.002119
ORF1ab/nsp2505F505delTTT---11B.1.1770.000013
ORF1ab/nsp2505F505LTttCtt11B.1.177.650.000665
ORF1ab/nsp2505F505delTTT---11B.1.1790.003759
ORF1ab/nsp2505F505CtTttGt11B.1.20.000009
ORF1ab/nsp2505F505CtTttGt11B.1.221.30.000833
ORF1ab/nsp2505F505del1Ttt-tt11B.1.2320.000537
ORF1ab/nsp2505F505YtTttAt11B.1.2340.000132
ORF1ab/nsp2505F505del1Ttt-tt11B.1.2430.00007
ORF1ab/nsp2505F505FttTttC11B.1.2580.000067
ORF1ab/nsp2505F505StTttCt11B.1.2600.003344
ORF1ab/nsp2505F505ITttAtt11B.1.3560.001727
ORF1ab/nsp2505F505CtTttGt11B.1.36.290.000517
ORF1ab/nsp2505F505del1Ttt-tt11B.1.4000.000429
ORF1ab/nsp2505F505LTttCtt11B.1.4000.000429
ORF1ab/nsp2505F505delTTT---11B.1.416.10.001563
ORF1ab/nsp2505F505del1Ttt-tt11B.1.4290.000024
ORF1ab/nsp2505F505LttTttA11B.1.4970.000315
ORF1ab/nsp2505F505LTttCtt11B.1.5250.000113
ORF1ab/nsp2505F505delTTT---11B.1.5610.000397
ORF1ab/nsp2505F505FttTttC11B.1.5680.001111
ORF1ab/nsp2505F505del1TTt-At11B.1.5820.000491
ORF1ab/nsp2505F505LTttCtt11B.1.5960.000087
ORF1ab/nsp2505F505LTttCtt11B.1.617.10.000129
ORF1ab/nsp2505F505TTTTACC11B.1.617.20.000004
ORF1ab/nsp2505F505VTttGtt11B.1.617.20.000004
ORF1ab/nsp2505F505FttTttC11B.1.617.20.000004
ORF1ab/nsp2505F505delTTT---11B.570.015152
ORF1ab/nsp2505F505del1Ttt-tt11B.60.00091
ORF1ab/nsp2505F505delTTT---11P.10.000016
ORF1ab/nsp2505F505LTttCtt11P.1.120.000484
ORF1ab/nsp2505F505ITttAtt11P.1.140.000048
ORF1ab/nsp2505F505delTTT---11P.20.000187
ORF1ab/nsp2505F505FttTttC11P.70.004367
ORF1ab/nsp2505F505del1Ttt-tt11Q.30.000145