CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 502 | V502V | V682V | syn | gtA | gtG | 835 | 817 | 0.978443 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502V | V682V | syn | gtA | gtT | 835 | 10 | 0.011976 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502V | V682V | syn | gtA | gtC | 835 | 8 | 0.00958084 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502I | V682I | nonsyn | Gta | Ata | 746 | 746 | 1 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502L | V682L | nonsyn | Gta | Tta | 103 | 95 | 0.92233 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502L | V682L | nonsyn | Gta | Cta | 103 | 4 | 0.038835 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502L | V682L | nonsyn | GtA | CtC | 103 | 2 | 0.0194175 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502L | V682L | nonsyn | GtA | CtG | 103 | 1 | 0.00970874 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502L | V682L | nonsyn | GtA | TtG | 103 | 1 | 0.00970874 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502del | V682del | del | GTA | --- | 75 | 75 | 1 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502A | V682A | nonsyn | gTa | gCa | 48 | 47 | 0.979167 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502A | V682A | nonsyn | gTA | gCC | 48 | 1 | 0.0208333 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502del1 | V682del1 | del | gtA | gt- | 17 | 10 | 0.588235 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502del1 | V682del1 | del | Gta | -ta | 17 | 3 | 0.176471 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502del1 | V682del1 | del | gTa | g-a | 17 | 2 | 0.117647 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502del1 | V682del1 | del | GTa | -Ka | 17 | 1 | 0.0588235 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502del1 | V682del1 | del | gTA | g-N | 17 | 1 | 0.0588235 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502S | V682S | nonsyn | GTA | AGC | 4 | 4 | 1 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502G | V682G | nonsyn | gTa | gGa | 3 | 2 | 0.666667 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502G | V682G | nonsyn | gTA | gGG | 3 | 1 | 0.333333 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502K | V682K | nonsyn | GTa | AAa | 2 | 2 | 1 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502E | V682E | nonsyn | gTa | gAa | 2 | 2 | 1 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502M | V682M | nonsyn | GtA | AtG | 1 | 1 | 1 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502R | V682R | nonsyn | GTa | AGa | 1 | 1 | 1 | 2309-2311 |
ORF1ab/nsp2 | 502 | V502P | V682P | nonsyn | GTa | CCa | 1 | 1 | 1 | 2309-2311 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 817 | 835 | All | 0.000156 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtT | 10 | 835 | All | 0.000002 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtC | 8 | 835 | All | 0.000002 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 746 | 746 | All | 0.000143 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 615 | 615 | B.1.1.523 | 0.960938 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 439 | 439 | B.1.1.7 | 0.000393 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 131 | 131 | AY.23 | 0.009137 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 95 | 103 | All | 0.000018 |
ORF1ab/nsp2 | 502 | V502L | Gta | Cta | 4 | 103 | All | 0.000001 |
ORF1ab/nsp2 | 502 | V502L | GtA | CtC | 2 | 103 | All | 0 |
ORF1ab/nsp2 | 502 | V502L | GtA | TtG | 1 | 103 | All | 0 |
ORF1ab/nsp2 | 502 | V502L | GtA | CtG | 1 | 103 | All | 0 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 75 | 75 | All | 0.000014 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 47 | 48 | All | 0.000009 |
ORF1ab/nsp2 | 502 | V502A | gTA | gCC | 1 | 48 | All | 0 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 45 | 45 | AY.44 | 0.000274 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 39 | 39 | AY.102 | 0.001034 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 36 | 36 | AY.4 | 0.000056 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 36 | 36 | B.1.617.2 | 0.000136 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 25 | 31 | B.1.1.7 | 0.000022 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtC | 6 | 31 | B.1.1.7 | 0.000005 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 18 | 18 | B.1.1 | 0.000327 |
ORF1ab/nsp2 | 502 | V502del1 | gtA | gt- | 10 | 17 | All | 0.000002 |
ORF1ab/nsp2 | 502 | V502del1 | Gta | -ta | 3 | 17 | All | 0.000001 |
ORF1ab/nsp2 | 502 | V502del1 | gTa | g-a | 2 | 17 | All | 0 |
ORF1ab/nsp2 | 502 | V502del1 | gTA | g-N | 1 | 17 | All | 0 |
ORF1ab/nsp2 | 502 | V502del1 | GTa | -Ka | 1 | 17 | All | 0 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 17 | 17 | Q.8 | 0.002803 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 13 | 15 | B.1.1.7 | 0.000012 |
ORF1ab/nsp2 | 502 | V502L | GtA | CtC | 2 | 15 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 9 | 9 | AY.94 | 0.003984 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtT | 8 | 8 | B.1.416.1 | 0.0125 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 6 | 6 | B.1.131 | 0.052632 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 5 | 5 | AY.120.1 | 0.001605 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 3 | 5 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 502 | V502L | GtA | CtG | 1 | 5 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 502 | V502L | Gta | Cta | 1 | 5 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp2 | 502 | V502S | GTA | AGC | 4 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 3 | 4 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtT | 1 | 4 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 502 | V502del1 | gtA | gt- | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp2 | 502 | V502del1 | gtA | gt- | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 502 | V502G | gTa | gGa | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 502 | V502G | gTA | gGG | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 502 | V502L | Gta | Cta | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp2 | 502 | V502del1 | Gta | -ta | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 502 | V502del1 | gTA | g-N | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 502 | V502del1 | gTa | g-a | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtC | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 502 | V502S | GTA | AGC | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 502 | V502E | gTa | gAa | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 502 | V502K | GTa | AAa | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 502 | V502L | Gta | Cta | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp2 | 502 | V502A | gTA | gCC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 502 | V502P | GTa | CCa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 502 | V502P | GTa | CCa | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 502 | V502R | GTa | AGa | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 502 | V502M | GtA | AtG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 502 | V502del1 | gTa | g-a | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 502 | V502del1 | GTa | -Ka | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 502 | V502del1 | Gta | -ta | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 502 | V502del1 | gtA | gt- | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 502 | V502G | gTa | gGa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 502 | V502K | GTa | AAa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 502 | V502M | GtA | AtG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 502 | V502L | Gta | Cta | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 502 | V502del1 | Gta | -ta | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 502 | V502S | GTA | AGC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp2 | 502 | V502G | gTa | gGa | 1 | 1 | B.1.1.125 | 0.010204 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 1 | B.1.1.324 | 0.052632 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 502 | V502S | GTA | AGC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 502 | V502E | gTa | gAa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp2 | 502 | V502K | GTa | AAa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp2 | 502 | V502del1 | gtA | gt- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 502 | V502V | gtA | gtG | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 502 | V502R | GTa | AGa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 502 | V502E | gTa | gAa | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 502 | V502L | GtA | TtG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 502 | V502G | gTA | gGG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 502 | V502A | gTa | gCa | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 502 | V502L | Gta | Tta | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 502 | V502I | Gta | Ata | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 502 | V502del | GTA | --- | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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