CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 502

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2502V502VV682VsyngtAgtG8358170.9784432309-2311
ORF1ab/nsp2502V502VV682VsyngtAgtT835100.0119762309-2311
ORF1ab/nsp2502V502VV682VsyngtAgtC83580.009580842309-2311
ORF1ab/nsp2502V502IV682InonsynGtaAta74674612309-2311
ORF1ab/nsp2502V502LV682LnonsynGtaTta103950.922332309-2311
ORF1ab/nsp2502V502LV682LnonsynGtaCta10340.0388352309-2311
ORF1ab/nsp2502V502LV682LnonsynGtACtC10320.01941752309-2311
ORF1ab/nsp2502V502LV682LnonsynGtACtG10310.009708742309-2311
ORF1ab/nsp2502V502LV682LnonsynGtATtG10310.009708742309-2311
ORF1ab/nsp2502V502delV682deldelGTA---757512309-2311
ORF1ab/nsp2502V502AV682AnonsyngTagCa48470.9791672309-2311
ORF1ab/nsp2502V502AV682AnonsyngTAgCC4810.02083332309-2311
ORF1ab/nsp2502V502del1V682del1delgtAgt-17100.5882352309-2311
ORF1ab/nsp2502V502del1V682del1delGta-ta1730.1764712309-2311
ORF1ab/nsp2502V502del1V682del1delgTag-a1720.1176472309-2311
ORF1ab/nsp2502V502del1V682del1delGTa-Ka1710.05882352309-2311
ORF1ab/nsp2502V502del1V682del1delgTAg-N1710.05882352309-2311
ORF1ab/nsp2502V502SV682SnonsynGTAAGC4412309-2311
ORF1ab/nsp2502V502GV682GnonsyngTagGa320.6666672309-2311
ORF1ab/nsp2502V502GV682GnonsyngTAgGG310.3333332309-2311
ORF1ab/nsp2502V502KV682KnonsynGTaAAa2212309-2311
ORF1ab/nsp2502V502EV682EnonsyngTagAa2212309-2311
ORF1ab/nsp2502V502MV682MnonsynGtAAtG1112309-2311
ORF1ab/nsp2502V502RV682RnonsynGTaAGa1112309-2311
ORF1ab/nsp2502V502PV682PnonsynGTaCCa1112309-2311

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2502V502VgtAgtG817835All0.000156
ORF1ab/nsp2502V502VgtAgtT10835All0.000002
ORF1ab/nsp2502V502VgtAgtC8835All0.000002
ORF1ab/nsp2502V502IGtaAta746746All0.000143
ORF1ab/nsp2502V502VgtAgtG615615B.1.1.5230.960938
ORF1ab/nsp2502V502IGtaAta439439B.1.1.70.000393
ORF1ab/nsp2502V502IGtaAta131131AY.230.009137
ORF1ab/nsp2502V502LGtaTta95103All0.000018
ORF1ab/nsp2502V502LGtaCta4103All0.000001
ORF1ab/nsp2502V502LGtACtC2103All0
ORF1ab/nsp2502V502LGtATtG1103All0
ORF1ab/nsp2502V502LGtACtG1103All0
ORF1ab/nsp2502V502delGTA---7575All0.000014
ORF1ab/nsp2502V502AgTagCa4748All0.000009
ORF1ab/nsp2502V502AgTAgCC148All0
ORF1ab/nsp2502V502IGtaAta4545AY.440.000274
ORF1ab/nsp2502V502VgtAgtG3939AY.1020.001034
ORF1ab/nsp2502V502IGtaAta3636AY.40.000056
ORF1ab/nsp2502V502VgtAgtG3636B.1.617.20.000136
ORF1ab/nsp2502V502VgtAgtG2531B.1.1.70.000022
ORF1ab/nsp2502V502VgtAgtC631B.1.1.70.000005
ORF1ab/nsp2502V502delGTA---2020B.1.1.70.000018
ORF1ab/nsp2502V502VgtAgtG1818B.1.10.000327
ORF1ab/nsp2502V502del1gtAgt-1017All0.000002
ORF1ab/nsp2502V502del1Gta-ta317All0.000001
ORF1ab/nsp2502V502del1gTag-a217All0
ORF1ab/nsp2502V502del1gTAg-N117All0
ORF1ab/nsp2502V502del1GTa-Ka117All0
ORF1ab/nsp2502V502IGtaAta1717Q.80.002803
ORF1ab/nsp2502V502LGtaTta1315B.1.1.70.000012
ORF1ab/nsp2502V502LGtACtC215B.1.1.70.000002
ORF1ab/nsp2502V502LGtaTta1414B.10.000128
ORF1ab/nsp2502V502IGtaAta1414B.1.617.20.000053
ORF1ab/nsp2502V502LGtaTta1313AY.40.00002
ORF1ab/nsp2502V502AgTagCa1313B.1.1.70.000012
ORF1ab/nsp2502V502VgtAgtG1010AY.1030.000062
ORF1ab/nsp2502V502VgtAgtG99AY.390.000222
ORF1ab/nsp2502V502IGtaAta99AY.940.003984
ORF1ab/nsp2502V502VgtAgtT88B.1.416.10.0125
ORF1ab/nsp2502V502LGtaTta77AY.390.000173
ORF1ab/nsp2502V502LGtaTta77B.1.617.20.000026
ORF1ab/nsp2502V502IGtaAta66AY.430.000027
ORF1ab/nsp2502V502AgTagCa66AY.440.000037
ORF1ab/nsp2502V502VgtAgtG66AY.440.000037
ORF1ab/nsp2502V502VgtAgtG66B.1.1310.052632
ORF1ab/nsp2502V502VgtAgtG55AY.1190.000177
ORF1ab/nsp2502V502LGtaTta55AY.1190.000177
ORF1ab/nsp2502V502VgtAgtG55AY.120.10.001605
ORF1ab/nsp2502V502VgtAgtG55AY.250.00003
ORF1ab/nsp2502V502IGtaAta55AY.30.00005
ORF1ab/nsp2502V502LGtaTta35AY.430.000013
ORF1ab/nsp2502V502LGtACtG15AY.430.000004
ORF1ab/nsp2502V502LGtaCta15AY.430.000004
ORF1ab/nsp2502V502delGTA---55B.10.000046
ORF1ab/nsp2502V502IGtaAta55B.1.10.000091
ORF1ab/nsp2502V502LGtaTta55B.1.20.000044
ORF1ab/nsp2502V502delGTA---55B.1.617.20.000019
ORF1ab/nsp2502V502delGTA---440.222222
ORF1ab/nsp2502V502SGTAAGC44All0.000001
ORF1ab/nsp2502V502AgTagCa44AY.40.000006
ORF1ab/nsp2502V502VgtAgtG34AY.40.000005
ORF1ab/nsp2502V502VgtAgtT14AY.40.000002
ORF1ab/nsp2502V502del1gtAgt-44AY.440.000024
ORF1ab/nsp2502V502LGtaTta44B.1.1.630.001543
ORF1ab/nsp2502V502del1gtAgt-44B.1.20.000035
ORF1ab/nsp2502V502GgTagGa23All0
ORF1ab/nsp2502V502GgTAgGG13All0
ORF1ab/nsp2502V502VgtAgtG33AY.1000.000138
ORF1ab/nsp2502V502VgtAgtG33AY.1180.000188
ORF1ab/nsp2502V502AgTagCa33AY.250.000018
ORF1ab/nsp2502V502LGtaTta23AY.250.000012
ORF1ab/nsp2502V502LGtaCta13AY.250.000006
ORF1ab/nsp2502V502VgtAgtG33AY.330.0002
ORF1ab/nsp2502V502delGTA---33AY.430.000013
ORF1ab/nsp2502V502VgtAgtG33B.10.000027
ORF1ab/nsp2502V502delGTA---33B.1.1.330.001263
ORF1ab/nsp2502V502AgTagCa33B.1.1.5190.000119
ORF1ab/nsp2502V502del1Gta-ta13B.1.1.70.000001
ORF1ab/nsp2502V502del1gTAg-N13B.1.1.70.000001
ORF1ab/nsp2502V502del1gTag-a13B.1.1.70.000001
ORF1ab/nsp2502V502IGtaAta33P.1.100.000808
ORF1ab/nsp2502V502VgtAgtC220.111111
ORF1ab/nsp2502V502SGTAAGC220.111111
ORF1ab/nsp2502V502EgTagAa22All0
ORF1ab/nsp2502V502KGTaAAa22All0
ORF1ab/nsp2502V502IGtaAta22AY.1020.000053
ORF1ab/nsp2502V502IGtaAta22AY.1030.000012
ORF1ab/nsp2502V502VgtAgtG22AY.230.000139
ORF1ab/nsp2502V502AgTagCa22AY.390.000049
ORF1ab/nsp2502V502IGtaAta22AY.400.001929
ORF1ab/nsp2502V502VgtAgtG22AY.430.000009
ORF1ab/nsp2502V502delGTA---22AY.440.000012
ORF1ab/nsp2502V502LGtaCta12AY.440.000006
ORF1ab/nsp2502V502LGtaTta12AY.440.000006
ORF1ab/nsp2502V502VgtAgtG22AY.450.000243
ORF1ab/nsp2502V502AgTagCa22AY.450.000243
ORF1ab/nsp2502V502IGtaAta22AY.470.000062
ORF1ab/nsp2502V502VgtAgtG22AY.550.001835
ORF1ab/nsp2502V502delGTA---22AY.990.002099
ORF1ab/nsp2502V502IGtaAta22B.10.000018
ORF1ab/nsp2502V502delGTA---22B.1.10.000036
ORF1ab/nsp2502V502delGTA---22B.1.1.3480.001592
ORF1ab/nsp2502V502IGtaAta22B.1.2400.000431
ORF1ab/nsp2502V502delGTA---22B.1.4240.016129
ORF1ab/nsp2502V502delGTA---22B.1.4290.000047
ORF1ab/nsp2502V502AgTagCa22B.1.4700.002809
ORF1ab/nsp2502V502AgTAgCC12B.1.617.20.000004
ORF1ab/nsp2502V502AgTagCa12B.1.617.20.000004
ORF1ab/nsp2502V502delGTA---22N.60.014184
ORF1ab/nsp2502V502PGTaCCa11A0.000387
ORF1ab/nsp2502V502IGtaAta11A.23.10.000704
ORF1ab/nsp2502V502PGTaCCa11All0
ORF1ab/nsp2502V502RGTaAGa11All0
ORF1ab/nsp2502V502MGtAAtG11All0
ORF1ab/nsp2502V502LGtaTta11AY.1020.000027
ORF1ab/nsp2502V502del1gTag-a11AY.1030.000006
ORF1ab/nsp2502V502delGTA---11AY.1030.000006
ORF1ab/nsp2502V502LGtaTta11AY.1030.000006
ORF1ab/nsp2502V502VgtAgtG11AY.1050.000643
ORF1ab/nsp2502V502LGtaTta11AY.1060.000335
ORF1ab/nsp2502V502VgtAgtG11AY.1080.001103
ORF1ab/nsp2502V502delGTA---11AY.1080.001103
ORF1ab/nsp2502V502del1GTa-Ka11AY.1130.000142
ORF1ab/nsp2502V502del1Gta-ta11AY.120.000316
ORF1ab/nsp2502V502IGtaAta11AY.1200.000037
ORF1ab/nsp2502V502del1gtAgt-11AY.120.10.000321
ORF1ab/nsp2502V502LGtaTta11AY.200.000039
ORF1ab/nsp2502V502VgtAgtG11AY.200.000039
ORF1ab/nsp2502V502AgTagCa11AY.230.00007
ORF1ab/nsp2502V502IGtaAta11AY.240.000431
ORF1ab/nsp2502V502IGtaAta11AY.250.000006
ORF1ab/nsp2502V502delGTA---11AY.250.000006
ORF1ab/nsp2502V502VgtAgtG11AY.270.000065
ORF1ab/nsp2502V502delGTA---11AY.29.10.000221
ORF1ab/nsp2502V502GgTagGa11AY.30.00001
ORF1ab/nsp2502V502IGtaAta11AY.390.000025
ORF1ab/nsp2502V502delGTA---11AY.390.000025
ORF1ab/nsp2502V502LGtaTta11AY.39.10.00004
ORF1ab/nsp2502V502delGTA---11AY.40.000002
ORF1ab/nsp2502V502IGtaAta11AY.4.20.000022
ORF1ab/nsp2502V502LGtaTta11AY.420.00004
ORF1ab/nsp2502V502IGtaAta11AY.420.00004
ORF1ab/nsp2502V502AgTagCa11AY.430.000004
ORF1ab/nsp2502V502KGTaAAa11AY.460.000104
ORF1ab/nsp2502V502IGtaAta11AY.46.10.001027
ORF1ab/nsp2502V502MGtAAtG11AY.46.60.000072
ORF1ab/nsp2502V502VgtAgtG11AY.46.60.000072
ORF1ab/nsp2502V502VgtAgtG11AY.50.000021
ORF1ab/nsp2502V502LGtaTta11AY.50.000021
ORF1ab/nsp2502V502IGtaAta11AY.50.000021
ORF1ab/nsp2502V502AgTagCa11AY.520.000814
ORF1ab/nsp2502V502VgtAgtG11AY.60.000041
ORF1ab/nsp2502V502VgtAgtG11AY.640.000595
ORF1ab/nsp2502V502delGTA---11AY.670.000464
ORF1ab/nsp2502V502VgtAgtG11AY.670.000464
ORF1ab/nsp2502V502VgtAgtG11AY.680.000274
ORF1ab/nsp2502V502delGTA---11AY.750.000056
ORF1ab/nsp2502V502IGtaAta11AY.750.000056
ORF1ab/nsp2502V502LGtaTta11AY.75.10.00018
ORF1ab/nsp2502V502delGTA---11AY.840.000437
ORF1ab/nsp2502V502IGtaAta11AY.9.20.000037
ORF1ab/nsp2502V502VgtAgtG11AY.910.00073
ORF1ab/nsp2502V502LGtaCta11AY.980.000079
ORF1ab/nsp2502V502IGtaAta11AY.98.10.000048
ORF1ab/nsp2502V502delGTA---11AY.98.10.000048
ORF1ab/nsp2502V502AgTagCa11B0.000128
ORF1ab/nsp2502V502AgTagCa11B.10.000009
ORF1ab/nsp2502V502LGtaTta11B.1.10.000018
ORF1ab/nsp2502V502del1Gta-ta11B.1.10.000018
ORF1ab/nsp2502V502SGTAAGC11B.1.10.000018
ORF1ab/nsp2502V502LGtaTta11B.1.1.120.007463
ORF1ab/nsp2502V502GgTagGa11B.1.1.1250.010204
ORF1ab/nsp2502V502LGtaTta11B.1.1.1410.002012
ORF1ab/nsp2502V502VgtAgtG11B.1.1.1610.003534
ORF1ab/nsp2502V502IGtaAta11B.1.1.2220.000204
ORF1ab/nsp2502V502IGtaAta11B.1.1.3060.000438
ORF1ab/nsp2502V502VgtAgtG11B.1.1.3180.000302
ORF1ab/nsp2502V502AgTagCa11B.1.1.3240.052632
ORF1ab/nsp2502V502LGtaTta11B.1.1.330.000421
ORF1ab/nsp2502V502IGtaAta11B.1.1.3620.005618
ORF1ab/nsp2502V502delGTA---11B.1.1.3720.000689
ORF1ab/nsp2502V502AgTagCa11B.1.1.3850.004464
ORF1ab/nsp2502V502IGtaAta11B.1.1.3970.002252
ORF1ab/nsp2502V502delGTA---11B.1.1.4160.000905
ORF1ab/nsp2502V502delGTA---11B.1.1.5230.001563
ORF1ab/nsp2502V502SGTAAGC11B.1.1.70.000001
ORF1ab/nsp2502V502EgTagAa11B.1.1.700.000341
ORF1ab/nsp2502V502IGtaAta11B.1.1180.006711
ORF1ab/nsp2502V502KGTaAAa11B.1.1600.000031
ORF1ab/nsp2502V502VgtAgtT11B.1.1600.000031
ORF1ab/nsp2502V502VgtAgtG11B.1.160.320.004292
ORF1ab/nsp2502V502del1gtAgt-11B.1.1770.000013
ORF1ab/nsp2502V502LGtaTta11B.1.1770.000013
ORF1ab/nsp2502V502delGTA---11B.1.1770.000013
ORF1ab/nsp2502V502AgTagCa11B.1.1770.000013
ORF1ab/nsp2502V502VgtAgtG11B.1.177.570.000281
ORF1ab/nsp2502V502IGtaAta11B.1.177.820.000477
ORF1ab/nsp2502V502delGTA---11B.1.1790.003759
ORF1ab/nsp2502V502delGTA---11B.1.20.000009
ORF1ab/nsp2502V502AgTagCa11B.1.20.000009
ORF1ab/nsp2502V502RGTaAGa11B.1.20.000009
ORF1ab/nsp2502V502IGtaAta11B.1.20.000009
ORF1ab/nsp2502V502LGtaTta11B.1.2210.000071
ORF1ab/nsp2502V502LGtaTta11B.1.2340.000132
ORF1ab/nsp2502V502LGtaTta11B.1.2430.00007
ORF1ab/nsp2502V502IGtaAta11B.1.2430.00007
ORF1ab/nsp2502V502LGtaTta11B.1.3510.00003
ORF1ab/nsp2502V502IGtaAta11B.1.36.180.00042
ORF1ab/nsp2502V502LGtaTta11B.1.3960.000706
ORF1ab/nsp2502V502AgTagCa11B.1.3990.001934
ORF1ab/nsp2502V502delGTA---11B.1.416.10.001563
ORF1ab/nsp2502V502IGtaAta11B.1.4270.00005
ORF1ab/nsp2502V502IGtaAta11B.1.4290.000024
ORF1ab/nsp2502V502LGtaTta11B.1.438.10.000107
ORF1ab/nsp2502V502EgTagAa11B.1.5040.03125
ORF1ab/nsp2502V502delGTA---11B.1.5610.000397
ORF1ab/nsp2502V502LGtaTta11B.1.6090.000479
ORF1ab/nsp2502V502LGtATtG11B.1.617.10.000129
ORF1ab/nsp2502V502GgTAgGG11B.1.617.20.000004
ORF1ab/nsp2502V502AgTagCa11B.1.619.10.000641
ORF1ab/nsp2502V502delGTA---11B.570.015152
ORF1ab/nsp2502V502LGtaTta11D.20.000075
ORF1ab/nsp2502V502delGTA---11P.10.000016
ORF1ab/nsp2502V502IGtaAta11P.10.000016
ORF1ab/nsp2502V502delGTA---11P.20.000187