CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 501

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2501L501FL681FnonsynCttTtt789178890.9997472306-2308
ORF1ab/nsp2501L501FL681FnonsynCtTTtC789120.0002534532306-2308
ORF1ab/nsp2501L501LL681LsynctTctC554755260.9962142306-2308
ORF1ab/nsp2501L501LL681LsynctTctA5547150.002704162306-2308
ORF1ab/nsp2501L501LL681LsynctTctG554760.001081672306-2308
ORF1ab/nsp2501L501delL681deldelCTT---757512306-2308
ORF1ab/nsp2501L501IL681InonsynCttAtt26250.9615382306-2308
ORF1ab/nsp2501L501IL681InonsynCtTAtC2610.03846152306-2308
ORF1ab/nsp2501L501RL681RnonsyncTtcGt121212306-2308
ORF1ab/nsp2501L501PL681PnonsyncTtcCt950.5555562306-2308
ORF1ab/nsp2501L501PL681PnonsyncTTcCC920.2222222306-2308
ORF1ab/nsp2501L501PL681PnonsyncTTcCG910.1111112306-2308
ORF1ab/nsp2501L501PL681PnonsyncTTcCA910.1111112306-2308
ORF1ab/nsp2501L501del1L681del1delcTtc-t830.3752306-2308
ORF1ab/nsp2501L501del1L681del1delctTct-820.252306-2308
ORF1ab/nsp2501L501del1L681del1delCTTWY-810.1252306-2308
ORF1ab/nsp2501L501del1L681del1delCtT-tC810.1252306-2308
ORF1ab/nsp2501L501del1L681del1delCTt-Ct810.1252306-2308
ORF1ab/nsp2501L501VL681VnonsynCttGtt6612306-2308
ORF1ab/nsp2501L501HL681HnonsyncTtcAt2212306-2308
ORF1ab/nsp2501L501AL681AnonsynCTTGCA1112306-2308

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2501L501FCttTtt78897891All0.001509
ORF1ab/nsp2501L501FCtTTtC27891All0
ORF1ab/nsp2501L501LctTctC55265547All0.001057
ORF1ab/nsp2501L501LctTctA155547All0.000003
ORF1ab/nsp2501L501LctTctG65547All0.000001
ORF1ab/nsp2501L501LctTctC54355435AY.40.008459
ORF1ab/nsp2501L501FCttTtt28522852B.1.1.70.002553
ORF1ab/nsp2501L501FCttTtt728728AY.40.001133
ORF1ab/nsp2501L501FCttTtt400400B.1.6250.941176
ORF1ab/nsp2501L501FCttTtt356357B.1.1600.011103
ORF1ab/nsp2501L501FCtTTtC1357B.1.1600.000031
ORF1ab/nsp2501L501FCttTtt354354B.1.617.20.001333
ORF1ab/nsp2501L501FCttTtt323323AY.430.001431
ORF1ab/nsp2501L501FCttTtt223223AY.90.015074
ORF1ab/nsp2501L501FCttTtt126126AY.1170.010649
ORF1ab/nsp2501L501FCttTtt113113B.1.20.000995
ORF1ab/nsp2501L501FCttTtt112112B.1.10.002032
ORF1ab/nsp2501L501FCttTtt112112B.1.3510.003329
ORF1ab/nsp2501L501FCttTtt110110B.10.001008
ORF1ab/nsp2501L501FCttTtt9797B.1.36.90.311897
ORF1ab/nsp2501L501FCttTtt9393P.20.017357
ORF1ab/nsp2501L501FCttTtt8787AY.440.00053
ORF1ab/nsp2501L501FCttTtt8585AY.390.0021
ORF1ab/nsp2501L501delCTT---7575All0.000014
ORF1ab/nsp2501L501FCttTtt7272AY.250.000433
ORF1ab/nsp2501L501FCttTtt6868AY.1020.001803
ORF1ab/nsp2501L501FCttTtt6363B.1.177.860.011558
ORF1ab/nsp2501L501FCttTtt5959AY.1000.002714
ORF1ab/nsp2501L501FCttTtt5858B.1.1.280.018052
ORF1ab/nsp2501L501FCttTtt5757B.1.4270.002878
ORF1ab/nsp2501L501FCttTtt5757P.10.000898
ORF1ab/nsp2501L501FCttTtt4646AY.1030.000286
ORF1ab/nsp2501L501FCttTtt4444AY.4.20.000954
ORF1ab/nsp2501L501LctTctC4242AY.1190.001483
ORF1ab/nsp2501L501FCttTtt4141AY.340.003976
ORF1ab/nsp2501L501FCttTtt4040AY.30.000398
ORF1ab/nsp2501L501FCttTtt3939AY.4.2.10.00581
ORF1ab/nsp2501L501FCttTtt3939B.1.1770.000514
ORF1ab/nsp2501L501FCttTtt2929AA.10.210145
ORF1ab/nsp2501L501FCttTtt2828AY.290.000442
ORF1ab/nsp2501L501ICttAtt2526All0.000005
ORF1ab/nsp2501L501ICtTAtC126All0
ORF1ab/nsp2501L501FCttTtt2626AY.50.000537
ORF1ab/nsp2501L501FCttTtt2424B.1.2340.003167
ORF1ab/nsp2501L501FCttTtt2424B.1.360.003502
ORF1ab/nsp2501L501FCttTtt2323AY.1190.000812
ORF1ab/nsp2501L501FCttTtt2222AD.2.11
ORF1ab/nsp2501L501FCttTtt2222B.1.6370.001608
ORF1ab/nsp2501L501FCttTtt2121AY.1130.00299
ORF1ab/nsp2501L501FCttTtt2121AY.39.10.000832
ORF1ab/nsp2501L501delCTT---2020B.1.1.70.000018
ORF1ab/nsp2501L501FCttTtt2020B.1.4290.000471
ORF1ab/nsp2501L501FCttTtt1919AY.420.000764
ORF1ab/nsp2501L501FCttTtt1919B.1.177.600.00415
ORF1ab/nsp2501L501FCttTtt1919B.1.2430.001322
ORF1ab/nsp2501L501FCttTtt1919C.36.30.010777
ORF1ab/nsp2501L501FCttTtt1818AY.260.00051
ORF1ab/nsp2501L501FCttTtt1818AY.880.015915
ORF1ab/nsp2501L501FCttTtt1717A0.006579
ORF1ab/nsp2501L501FCttTtt1616AY.3.10.001364
ORF1ab/nsp2501L501LctTctC1516B.1.1.70.000013
ORF1ab/nsp2501L501LctTctA116B.1.1.70.000001
ORF1ab/nsp2501L501FCttTtt1616B.1.177.210.001224
ORF1ab/nsp2501L501FCttTtt1616B.1.5260.000376
ORF1ab/nsp2501L501FCttTtt1414N.50.024735
ORF1ab/nsp2501L501FCttTtt1313AY.330.000868
ORF1ab/nsp2501L501FCttTtt1313AY.5.40.003597
ORF1ab/nsp2501L501FCttTtt1313B.1.177.710.131313
ORF1ab/nsp2501L501FCttTtt1313B.1.177.80.009782
ORF1ab/nsp2501L501RcTtcGt1212All0.000002
ORF1ab/nsp2501L501FCttTtt1212R.10.00108
ORF1ab/nsp2501L501FCttTtt1111AY.1070.005126
ORF1ab/nsp2501L501FCttTtt1111AY.1090.008136
ORF1ab/nsp2501L501FCttTtt1111B.1.2210.000781
ORF1ab/nsp2501L501FCttTtt1010B.1.5960.000871
ORF1ab/nsp2501L501FCttTtt99A.110.529412
ORF1ab/nsp2501L501PcTtcCt59All0.000001
ORF1ab/nsp2501L501PcTTcCC29All0
ORF1ab/nsp2501L501PcTTcCG19All0
ORF1ab/nsp2501L501PcTTcCA19All0
ORF1ab/nsp2501L501FCttTtt99AY.470.00028
ORF1ab/nsp2501L501FCttTtt99AY.98.10.000436
ORF1ab/nsp2501L501FCttTtt99B.1.1.510.015464
ORF1ab/nsp2501L501FCttTtt99B.1.1.5190.000357
ORF1ab/nsp2501L501del1cTtc-t38All0.000001
ORF1ab/nsp2501L501del1ctTct-28All0
ORF1ab/nsp2501L501del1CtT-tC18All0
ORF1ab/nsp2501L501del1CTTWY-18All0
ORF1ab/nsp2501L501del1CTt-Ct18All0
ORF1ab/nsp2501L501FCttTtt88AY.200.000311
ORF1ab/nsp2501L501FCttTtt88AY.300.003166
ORF1ab/nsp2501L501FCttTtt88B.1.1.1570.007306
ORF1ab/nsp2501L501FCttTtt88B.1.177.440.004152
ORF1ab/nsp2501L501FCttTtt77AY.1050.004502
ORF1ab/nsp2501L501LctTctC57AY.30.00005
ORF1ab/nsp2501L501LctTctA27AY.30.00002
ORF1ab/nsp2501L501FCttTtt77AY.9.20.000257
ORF1ab/nsp2501L501FCttTtt77B.1.1.3060.003069
ORF1ab/nsp2501L501LctTctC57B.1.617.20.000019
ORF1ab/nsp2501L501LctTctA27B.1.617.20.000008
ORF1ab/nsp2501L501FCttTtt77B.1.930.006536
ORF1ab/nsp2501L501FCttTtt77P.1.100.001886
ORF1ab/nsp2501L501delCTT---660.333333
ORF1ab/nsp2501L501FCttTtt66A.23.10.004225
ORF1ab/nsp2501L501VCttGtt66All0.000001
ORF1ab/nsp2501L501FCttTtt66AY.320.003195
ORF1ab/nsp2501L501ICttAtt66AY.40.000009
ORF1ab/nsp2501L501FCttTtt66AY.540.000572
ORF1ab/nsp2501L501FCttTtt66AY.790.007264
ORF1ab/nsp2501L501FCttTtt66AY.850.002563
ORF1ab/nsp2501L501FCttTtt66B.1.1280.003812
ORF1ab/nsp2501L501FCttTtt66B.1.177.770.004357
ORF1ab/nsp2501L501FCttTtt66B.1.617.10.000774
ORF1ab/nsp2501L501FCttTtt66C.370.000696
ORF1ab/nsp2501L501FCttTtt66P.1.140.000287
ORF1ab/nsp2501L501FCttTtt66P.1.150.001394
ORF1ab/nsp2501L501FCttTtt55AY.1160.001434
ORF1ab/nsp2501L501FCttTtt55AY.1180.000313
ORF1ab/nsp2501L501FCttTtt55AY.230.000349
ORF1ab/nsp2501L501FCttTtt55AY.460.00052
ORF1ab/nsp2501L501FCttTtt55AY.46.50.000992
ORF1ab/nsp2501L501FCttTtt55B0.000639
ORF1ab/nsp2501L501delCTT---55B.10.000046
ORF1ab/nsp2501L501FCttTtt55B.1.1.1700.006234
ORF1ab/nsp2501L501FCttTtt55B.1.1.3970.011261
ORF1ab/nsp2501L501FCttTtt55B.1.1.4340.001743
ORF1ab/nsp2501L501ICttAtt55B.1.1.70.000004
ORF1ab/nsp2501L501FCttTtt55B.1.177.230.016181
ORF1ab/nsp2501L501FCttTtt55B.1.3110.001373
ORF1ab/nsp2501L501FCttTtt55B.1.5170.002135
ORF1ab/nsp2501L501FCttTtt55B.1.5650.004052
ORF1ab/nsp2501L501FCttTtt55P.1.70.001596
ORF1ab/nsp2501L501LctTctC34AY.1030.000019
ORF1ab/nsp2501L501LctTctA14AY.1030.000006
ORF1ab/nsp2501L501FCttTtt44AY.360.000593
ORF1ab/nsp2501L501ICttAtt44AY.4.20.000087
ORF1ab/nsp2501L501FCttTtt44AY.4.50.00043
ORF1ab/nsp2501L501delCTT---44AY.430.000018
ORF1ab/nsp2501L501FCttTtt44AY.46.10.004107
ORF1ab/nsp2501L501PcTtcCt44B.1.1.70.000004
ORF1ab/nsp2501L501FCttTtt44B.1.2580.000266
ORF1ab/nsp2501L501FCttTtt44B.1.258.140.003922
ORF1ab/nsp2501L501FCttTtt44B.1.3060.022857
ORF1ab/nsp2501L501FCttTtt44B.1.3990.007737
ORF1ab/nsp2501L501delCTT---44B.1.617.20.000015
ORF1ab/nsp2501L501FCttTtt44D.20.0003
ORF1ab/nsp2501L501FCttTtt33AD.20.000657
ORF1ab/nsp2501L501FCttTtt33AY.1110.000549
ORF1ab/nsp2501L501FCttTtt33AY.120.10.000963
ORF1ab/nsp2501L501VCttGtt33AY.30.00003
ORF1ab/nsp2501L501LctTctC33AY.430.000013
ORF1ab/nsp2501L501LctTctA13AY.440.000006
ORF1ab/nsp2501L501LctTctG13AY.440.000006
ORF1ab/nsp2501L501LctTctC13AY.440.000006
ORF1ab/nsp2501L501FCttTtt33AY.46.60.000217
ORF1ab/nsp2501L501FCttTtt33AY.650.001599
ORF1ab/nsp2501L501FCttTtt33AY.670.001393
ORF1ab/nsp2501L501FCttTtt33AY.750.000168
ORF1ab/nsp2501L501FCttTtt33AY.9.10.000251
ORF1ab/nsp2501L501FCttTtt33AY.980.000237
ORF1ab/nsp2501L501FCttTtt33B.1.1.2140.000166
ORF1ab/nsp2501L501FCttTtt33B.1.1.3160.002775
ORF1ab/nsp2501L501FCttTtt33B.1.1.330.001263
ORF1ab/nsp2501L501delCTT---33B.1.1.330.001263
ORF1ab/nsp2501L501FCttTtt33B.1.466.20.001174
ORF1ab/nsp2501L501ICttAtt23B.1.617.20.000008
ORF1ab/nsp2501L501ICtTAtC13B.1.617.20.000004
ORF1ab/nsp2501L501FCttTtt33P.1.120.001452
ORF1ab/nsp2501L501FCttTtt33Q.10.000379
ORF1ab/nsp2501L501FCttTtt33Q.30.000435
ORF1ab/nsp2501L501FCttTtt33Q.80.000495
ORF1ab/nsp2501L501FCttTtt22A.10.000564
ORF1ab/nsp2501L501HcTtcAt22All0
ORF1ab/nsp2501L501FCttTtt22AY.10.000791
ORF1ab/nsp2501L501FCttTtt22AY.1010.000981
ORF1ab/nsp2501L501FCttTtt22AY.1200.000074
ORF1ab/nsp2501L501FCttTtt22AY.1210.000271
ORF1ab/nsp2501L501FCttTtt22AY.140.000176
ORF1ab/nsp2501L501FCttTtt22AY.160.000759
ORF1ab/nsp2501L501LctTctG12AY.420.00004
ORF1ab/nsp2501L501LctTctC12AY.420.00004
ORF1ab/nsp2501L501ICttAtt22AY.440.000012
ORF1ab/nsp2501L501FCttTtt22AY.450.000243
ORF1ab/nsp2501L501FCttTtt22AY.46.30.001867
ORF1ab/nsp2501L501PcTTcCG12AY.46.60.000072
ORF1ab/nsp2501L501LctTctG12AY.46.60.000072
ORF1ab/nsp2501L501PcTTcCC12AY.46.60.000072
ORF1ab/nsp2501L501LctTctC12AY.46.60.000072
ORF1ab/nsp2501L501FCttTtt22AY.5.30.000675
ORF1ab/nsp2501L501FCttTtt22AY.610.00021
ORF1ab/nsp2501L501LctTctA22AY.750.000112
ORF1ab/nsp2501L501FCttTtt22AY.75.10.000361
ORF1ab/nsp2501L501delCTT---22AY.990.002099
ORF1ab/nsp2501L501FCttTtt22AY.99.20.000184
ORF1ab/nsp2501L501LctTctA22B.10.000018
ORF1ab/nsp2501L501PcTTcCC12B.10.000009
ORF1ab/nsp2501L501PcTtcCt12B.10.000009
ORF1ab/nsp2501L501delCTT---22B.1.10.000036
ORF1ab/nsp2501L501FCttTtt22B.1.1.10.000653
ORF1ab/nsp2501L501FCttTtt22B.1.1.3110.000716
ORF1ab/nsp2501L501delCTT---22B.1.1.3480.001592
ORF1ab/nsp2501L501LctTctC22B.1.1.4340.000697
ORF1ab/nsp2501L501FCttTtt22B.1.1.440.004819
ORF1ab/nsp2501L501RcTtcGt22B.1.1.70.000002
ORF1ab/nsp2501L501HcTtcAt22B.1.1.70.000002
ORF1ab/nsp2501L501FCttTtt22B.1.1.700.000682
ORF1ab/nsp2501L501FCttTtt22B.1.120.016
ORF1ab/nsp2501L501FCttTtt22B.1.1570.00597
ORF1ab/nsp2501L501FCttTtt22B.1.177.810.000379
ORF1ab/nsp2501L501LctTctA22B.1.20.000018
ORF1ab/nsp2501L501del1CtT-tC12B.1.20.000009
ORF1ab/nsp2501L501del1cTtc-t12B.1.20.000009
ORF1ab/nsp2501L501LctTctC22B.1.2210.000142
ORF1ab/nsp2501L501FCttTtt22B.1.2360.004107
ORF1ab/nsp2501L501FCttTtt22B.1.2930.025
ORF1ab/nsp2501L501FCttTtt22B.1.351.30.001753
ORF1ab/nsp2501L501FCttTtt22B.1.36.120.019231
ORF1ab/nsp2501L501FCttTtt22B.1.36.290.001035
ORF1ab/nsp2501L501LctTctC22B.1.36.360.001204
ORF1ab/nsp2501L501FCttTtt22B.1.36.380.003284
ORF1ab/nsp2501L501FCttTtt22B.1.4000.000858
ORF1ab/nsp2501L501delCTT---22B.1.4240.016129
ORF1ab/nsp2501L501LctTctC22B.1.4290.000047
ORF1ab/nsp2501L501delCTT---22B.1.4290.000047
ORF1ab/nsp2501L501FCttTtt22B.1.438.10.000215
ORF1ab/nsp2501L501FCttTtt22B.1.5750.000607
ORF1ab/nsp2501L501RcTtcGt22B.1.617.10.000258
ORF1ab/nsp2501L501FCttTtt22B.1.6210.000177
ORF1ab/nsp2501L501FCttTtt22B.1.621.10.001012
ORF1ab/nsp2501L501FCttTtt22B.1.6310.006734
ORF1ab/nsp2501L501FCttTtt22C.1.20.008511
ORF1ab/nsp2501L501FCttTtt22C.160.002121
ORF1ab/nsp2501L501FCttTtt22C.350.001548
ORF1ab/nsp2501L501delCTT---22N.60.014184
ORF1ab/nsp2501L501FCttTtt22P.1.40.001953
ORF1ab/nsp2501L501delCTT---11A0.000387
ORF1ab/nsp2501L501LctTctG11A0.000387
ORF1ab/nsp2501L501FCttTtt11A.2.50.000499
ORF1ab/nsp2501L501ACTTGCA11All0
ORF1ab/nsp2501L501FCttTtt11AY.100.00053
ORF1ab/nsp2501L501RcTtcGt11AY.1000.000046
ORF1ab/nsp2501L501delCTT---11AY.1030.000006
ORF1ab/nsp2501L501FCttTtt11AY.1040.001984
ORF1ab/nsp2501L501delCTT---11AY.1080.001103
ORF1ab/nsp2501L501FCttTtt11AY.110.001339
ORF1ab/nsp2501L501del1CTTWY-11AY.1130.000142
ORF1ab/nsp2501L501LctTctA11AY.116.10.000311
ORF1ab/nsp2501L501del1ctTct-11AY.120.000316
ORF1ab/nsp2501L501FCttTtt11AY.130.000161
ORF1ab/nsp2501L501FCttTtt11AY.190.00114
ORF1ab/nsp2501L501LctTctC11AY.23.10.000417
ORF1ab/nsp2501L501FCttTtt11AY.240.000431
ORF1ab/nsp2501L501ICttAtt11AY.250.000006
ORF1ab/nsp2501L501delCTT---11AY.250.000006
ORF1ab/nsp2501L501delCTT---11AY.29.10.000221
ORF1ab/nsp2501L501RcTtcGt11AY.30.00001
ORF1ab/nsp2501L501ICttAtt11AY.3.10.000085
ORF1ab/nsp2501L501RcTtcGt11AY.330.000067
ORF1ab/nsp2501L501RcTtcGt11AY.390.000025
ORF1ab/nsp2501L501delCTT---11AY.390.000025
ORF1ab/nsp2501L501delCTT---11AY.40.000002
ORF1ab/nsp2501L501FCttTtt11AY.4.10.000737
ORF1ab/nsp2501L501FCttTtt11AY.410.000294
ORF1ab/nsp2501L501RcTtcGt11AY.430.000004
ORF1ab/nsp2501L501delCTT---11AY.440.000006
ORF1ab/nsp2501L501VCttGtt11AY.440.000006
ORF1ab/nsp2501L501LctTctC11AY.450.000122
ORF1ab/nsp2501L501del1cTtc-t11AY.460.000104
ORF1ab/nsp2501L501RcTtcGt11AY.530.000288
ORF1ab/nsp2501L501FCttTtt11AY.550.000917
ORF1ab/nsp2501L501FCttTtt11AY.590.00053
ORF1ab/nsp2501L501delCTT---11AY.670.000464
ORF1ab/nsp2501L501FCttTtt11AY.690.000187
ORF1ab/nsp2501L501ICttAtt11AY.70.000196
ORF1ab/nsp2501L501delCTT---11AY.750.000056
ORF1ab/nsp2501L501FCttTtt11AY.770.001127
ORF1ab/nsp2501L501delCTT---11AY.840.000437
ORF1ab/nsp2501L501LctTctC11AY.9.20.000037
ORF1ab/nsp2501L501FCttTtt11AY.910.00073
ORF1ab/nsp2501L501FCttTtt11AY.930.000273
ORF1ab/nsp2501L501FCttTtt11AY.940.000443
ORF1ab/nsp2501L501FCttTtt11AY.950.000761
ORF1ab/nsp2501L501FCttTtt11AY.970.001701
ORF1ab/nsp2501L501delCTT---11AY.98.10.000048
ORF1ab/nsp2501L501FCttTtt11AY.990.001049
ORF1ab/nsp2501L501LctTctG11AY.99.20.000092
ORF1ab/nsp2501L501VCttGtt11B0.000128
ORF1ab/nsp2501L501ICttAtt11B.10.000009
ORF1ab/nsp2501L501del1ctTct-11B.1.10.000018
ORF1ab/nsp2501L501FCttTtt11B.1.1.1210.002427
ORF1ab/nsp2501L501FCttTtt11B.1.1.1410.002012
ORF1ab/nsp2501L501FCttTtt11B.1.1.1640.005155
ORF1ab/nsp2501L501FCttTtt11B.1.1.1890.001513
ORF1ab/nsp2501L501RcTtcGt11B.1.1.2070.001182
ORF1ab/nsp2501L501FCttTtt11B.1.1.2180.007692
ORF1ab/nsp2501L501FCttTtt11B.1.1.2980.000862
ORF1ab/nsp2501L501FCttTtt11B.1.1.3170.000412
ORF1ab/nsp2501L501FCttTtt11B.1.1.3260.001761
ORF1ab/nsp2501L501LctTctG11B.1.1.330.000421
ORF1ab/nsp2501L501FCttTtt11B.1.1.3510.002793
ORF1ab/nsp2501L501FCttTtt11B.1.1.3690.000446
ORF1ab/nsp2501L501LctTctA11B.1.1.3720.000689
ORF1ab/nsp2501L501FCttTtt11B.1.1.3730.02381
ORF1ab/nsp2501L501FCttTtt11B.1.1.4130.006897
ORF1ab/nsp2501L501delCTT---11B.1.1.4160.000905
ORF1ab/nsp2501L501FCttTtt11B.1.1.4200.001006
ORF1ab/nsp2501L501FCttTtt11B.1.1.4620.008621
ORF1ab/nsp2501L501FCttTtt11B.1.1.500.000679
ORF1ab/nsp2501L501LctTctC11B.1.1.5190.00004
ORF1ab/nsp2501L501FCttTtt11B.1.1.5230.001563
ORF1ab/nsp2501L501delCTT---11B.1.1.5230.001563
ORF1ab/nsp2501L501FCttTtt11B.1.1.560.017857
ORF1ab/nsp2501L501ACTTGCA11B.1.1.70.000001
ORF1ab/nsp2501L501del1CTt-Ct11B.1.1.70.000001
ORF1ab/nsp2501L501FCttTtt11B.1.1.830.00271
ORF1ab/nsp2501L501FCttTtt11B.1.1260.001276
ORF1ab/nsp2501L501FCttTtt11B.1.160.290.004219
ORF1ab/nsp2501L501delCTT---11B.1.1770.000013
ORF1ab/nsp2501L501FCttTtt11B.1.177.280.007407
ORF1ab/nsp2501L501FCttTtt11B.1.177.40.000211
ORF1ab/nsp2501L501FCttTtt11B.1.177.530.002392
ORF1ab/nsp2501L501FCttTtt11B.1.177.550.002331
ORF1ab/nsp2501L501FCttTtt11B.1.177.730.000566
ORF1ab/nsp2501L501FCttTtt11B.1.177.820.000477
ORF1ab/nsp2501L501delCTT---11B.1.1790.003759
ORF1ab/nsp2501L501FCttTtt11B.1.1890.004292
ORF1ab/nsp2501L501ICttAtt11B.1.20.000009
ORF1ab/nsp2501L501FCttTtt11B.1.214.20.0006
ORF1ab/nsp2501L501FCttTtt11B.1.214.30.007143
ORF1ab/nsp2501L501FCttTtt11B.1.2180.005155
ORF1ab/nsp2501L501FCttTtt11B.1.220.001318
ORF1ab/nsp2501L501FCttTtt11B.1.2390.001221
ORF1ab/nsp2501L501FCttTtt11B.1.258.170.000104
ORF1ab/nsp2501L501LctTctC11B.1.2600.003344
ORF1ab/nsp2501L501FCttTtt11B.1.3040.023256
ORF1ab/nsp2501L501FCttTtt11B.1.3130.006579
ORF1ab/nsp2501L501FCttTtt11B.1.3250.006897
ORF1ab/nsp2501L501FCttTtt11B.1.3280.03125
ORF1ab/nsp2501L501LctTctC11B.1.3510.00003
ORF1ab/nsp2501L501FCttTtt11B.1.36.220.001208
ORF1ab/nsp2501L501VCttGtt11B.1.3620.001541
ORF1ab/nsp2501L501FCttTtt11B.1.3810.007812
ORF1ab/nsp2501L501FCttTtt11B.1.4040.001302
ORF1ab/nsp2501L501delCTT---11B.1.416.10.001563
ORF1ab/nsp2501L501FCtTTtC11B.1.4560.003268
ORF1ab/nsp2501L501ICttAtt11B.1.4620.007246
ORF1ab/nsp2501L501FCttTtt11B.1.4690.00361
ORF1ab/nsp2501L501FCttTtt11B.1.4970.000315
ORF1ab/nsp2501L501FCttTtt11B.1.5090.000866
ORF1ab/nsp2501L501FCttTtt11B.1.5380.008065
ORF1ab/nsp2501L501FCttTtt11B.1.5490.007194
ORF1ab/nsp2501L501FCttTtt11B.1.5510.00129
ORF1ab/nsp2501L501FCttTtt11B.1.5600.00463
ORF1ab/nsp2501L501delCTT---11B.1.5610.000397
ORF1ab/nsp2501L501FCttTtt11B.1.5610.000397
ORF1ab/nsp2501L501FCttTtt11B.1.5760.000907
ORF1ab/nsp2501L501PcTTcCA11B.1.617.20.000004
ORF1ab/nsp2501L501del1cTtc-t11B.1.617.20.000004
ORF1ab/nsp2501L501FCttTtt11B.1.6200.000946
ORF1ab/nsp2501L501FCttTtt11B.1.90.006173
ORF1ab/nsp2501L501delCTT---11B.570.015152
ORF1ab/nsp2501L501FCttTtt11C.36.3.10.002717
ORF1ab/nsp2501L501RcTtcGt11P.10.000016
ORF1ab/nsp2501L501LctTctC11P.10.000016
ORF1ab/nsp2501L501delCTT---11P.10.000016
ORF1ab/nsp2501L501FCttTtt11P.1.10.000318
ORF1ab/nsp2501L501FCttTtt11P.1.20.001156
ORF1ab/nsp2501L501delCTT---11P.20.000187
ORF1ab/nsp2501L501FCttTtt11P.40.003802

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.