CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 501 | L501F | L681F | nonsyn | Ctt | Ttt | 7891 | 7889 | 0.999747 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501F | L681F | nonsyn | CtT | TtC | 7891 | 2 | 0.000253453 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501L | L681L | syn | ctT | ctC | 5547 | 5526 | 0.996214 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501L | L681L | syn | ctT | ctA | 5547 | 15 | 0.00270416 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501L | L681L | syn | ctT | ctG | 5547 | 6 | 0.00108167 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501del | L681del | del | CTT | --- | 75 | 75 | 1 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501I | L681I | nonsyn | Ctt | Att | 26 | 25 | 0.961538 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501I | L681I | nonsyn | CtT | AtC | 26 | 1 | 0.0384615 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501R | L681R | nonsyn | cTt | cGt | 12 | 12 | 1 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501P | L681P | nonsyn | cTt | cCt | 9 | 5 | 0.555556 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501P | L681P | nonsyn | cTT | cCC | 9 | 2 | 0.222222 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501P | L681P | nonsyn | cTT | cCG | 9 | 1 | 0.111111 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501P | L681P | nonsyn | cTT | cCA | 9 | 1 | 0.111111 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501del1 | L681del1 | del | cTt | c-t | 8 | 3 | 0.375 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501del1 | L681del1 | del | ctT | ct- | 8 | 2 | 0.25 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501del1 | L681del1 | del | CTT | WY- | 8 | 1 | 0.125 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501del1 | L681del1 | del | CtT | -tC | 8 | 1 | 0.125 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501del1 | L681del1 | del | CTt | -Ct | 8 | 1 | 0.125 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501V | L681V | nonsyn | Ctt | Gtt | 6 | 6 | 1 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501H | L681H | nonsyn | cTt | cAt | 2 | 2 | 1 | 2306-2308 |
ORF1ab/nsp2 | 501 | L501A | L681A | nonsyn | CTT | GCA | 1 | 1 | 1 | 2306-2308 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 7889 | 7891 | All | 0.001509 |
ORF1ab/nsp2 | 501 | L501F | CtT | TtC | 2 | 7891 | All | 0 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 5526 | 5547 | All | 0.001057 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctA | 15 | 5547 | All | 0.000003 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctG | 6 | 5547 | All | 0.000001 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 5435 | 5435 | AY.4 | 0.008459 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2852 | 2852 | B.1.1.7 | 0.002553 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 728 | 728 | AY.4 | 0.001133 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 400 | 400 | B.1.625 | 0.941176 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 356 | 357 | B.1.160 | 0.011103 |
ORF1ab/nsp2 | 501 | L501F | CtT | TtC | 1 | 357 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 354 | 354 | B.1.617.2 | 0.001333 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 323 | 323 | AY.43 | 0.001431 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 223 | 223 | AY.9 | 0.015074 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 126 | 126 | AY.117 | 0.010649 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 113 | 113 | B.1.2 | 0.000995 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 112 | 112 | B.1.1 | 0.002032 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 112 | 112 | B.1.351 | 0.003329 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 110 | 110 | B.1 | 0.001008 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 97 | 97 | B.1.36.9 | 0.311897 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 93 | 93 | P.2 | 0.017357 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 87 | 87 | AY.44 | 0.00053 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 85 | 85 | AY.39 | 0.0021 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 75 | 75 | All | 0.000014 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 72 | 72 | AY.25 | 0.000433 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 68 | 68 | AY.102 | 0.001803 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 63 | 63 | B.1.177.86 | 0.011558 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 59 | 59 | AY.100 | 0.002714 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 58 | 58 | B.1.1.28 | 0.018052 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 57 | 57 | B.1.427 | 0.002878 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 57 | 57 | P.1 | 0.000898 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 46 | 46 | AY.103 | 0.000286 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 44 | 44 | AY.4.2 | 0.000954 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 42 | 42 | AY.119 | 0.001483 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 41 | 41 | AY.34 | 0.003976 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 40 | 40 | AY.3 | 0.000398 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 39 | 39 | AY.4.2.1 | 0.00581 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 39 | 39 | B.1.177 | 0.000514 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 29 | 29 | AA.1 | 0.210145 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 28 | 28 | AY.29 | 0.000442 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 25 | 26 | All | 0.000005 |
ORF1ab/nsp2 | 501 | L501I | CtT | AtC | 1 | 26 | All | 0 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 26 | 26 | AY.5 | 0.000537 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 24 | 24 | B.1.234 | 0.003167 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 24 | 24 | B.1.36 | 0.003502 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 23 | 23 | AY.119 | 0.000812 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 22 | 22 | AD.2.1 | 1 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 22 | 22 | B.1.637 | 0.001608 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 21 | 21 | AY.113 | 0.00299 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 21 | 21 | AY.39.1 | 0.000832 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 19 | 19 | AY.42 | 0.000764 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 19 | 19 | B.1.177.60 | 0.00415 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 19 | 19 | B.1.243 | 0.001322 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 19 | 19 | C.36.3 | 0.010777 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 18 | 18 | AY.26 | 0.00051 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 18 | 18 | AY.88 | 0.015915 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 17 | 17 | A | 0.006579 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 16 | 16 | AY.3.1 | 0.001364 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 15 | 16 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctA | 1 | 16 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 16 | 16 | B.1.177.21 | 0.001224 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 16 | 16 | B.1.526 | 0.000376 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 14 | 14 | N.5 | 0.024735 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 13 | 13 | AY.33 | 0.000868 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 13 | 13 | AY.5.4 | 0.003597 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 13 | 13 | B.1.177.71 | 0.131313 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 13 | 13 | B.1.177.8 | 0.009782 |
ORF1ab/nsp2 | 501 | L501R | cTt | cGt | 12 | 12 | All | 0.000002 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 12 | 12 | R.1 | 0.00108 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 11 | 11 | AY.107 | 0.005126 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 11 | 11 | AY.109 | 0.008136 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 11 | 11 | B.1.221 | 0.000781 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 10 | 10 | B.1.596 | 0.000871 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 9 | 9 | A.11 | 0.529412 |
ORF1ab/nsp2 | 501 | L501P | cTt | cCt | 5 | 9 | All | 0.000001 |
ORF1ab/nsp2 | 501 | L501P | cTT | cCC | 2 | 9 | All | 0 |
ORF1ab/nsp2 | 501 | L501P | cTT | cCG | 1 | 9 | All | 0 |
ORF1ab/nsp2 | 501 | L501P | cTT | cCA | 1 | 9 | All | 0 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 9 | 9 | B.1.1.51 | 0.015464 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp2 | 501 | L501del1 | cTt | c-t | 3 | 8 | All | 0.000001 |
ORF1ab/nsp2 | 501 | L501del1 | ctT | ct- | 2 | 8 | All | 0 |
ORF1ab/nsp2 | 501 | L501del1 | CtT | -tC | 1 | 8 | All | 0 |
ORF1ab/nsp2 | 501 | L501del1 | CTT | WY- | 1 | 8 | All | 0 |
ORF1ab/nsp2 | 501 | L501del1 | CTt | -Ct | 1 | 8 | All | 0 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 8 | 8 | AY.30 | 0.003166 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 8 | 8 | B.1.1.157 | 0.007306 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 8 | 8 | B.1.177.44 | 0.004152 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 7 | 7 | AY.105 | 0.004502 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 5 | 7 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctA | 2 | 7 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 7 | 7 | B.1.1.306 | 0.003069 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 5 | 7 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctA | 2 | 7 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 7 | 7 | B.1.93 | 0.006536 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 7 | 7 | P.1.10 | 0.001886 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 6 | 6 | A.23.1 | 0.004225 |
ORF1ab/nsp2 | 501 | L501V | Ctt | Gtt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 6 | 6 | AY.32 | 0.003195 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 6 | 6 | AY.79 | 0.007264 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 6 | 6 | AY.85 | 0.002563 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 6 | 6 | B.1.128 | 0.003812 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 6 | 6 | B.1.177.77 | 0.004357 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | AY.46.5 | 0.000992 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | B | 0.000639 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | B.1.1.170 | 0.006234 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | B.1.1.397 | 0.011261 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | B.1.177.23 | 0.016181 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | B.1.517 | 0.002135 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | B.1.565 | 0.004052 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 3 | 4 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctA | 1 | 4 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 4 | 4 | AY.46.1 | 0.004107 |
ORF1ab/nsp2 | 501 | L501P | cTt | cCt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 4 | 4 | B.1.258.14 | 0.003922 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 4 | 4 | B.1.306 | 0.022857 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 4 | 4 | B.1.399 | 0.007737 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp2 | 501 | L501V | Ctt | Gtt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctA | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctG | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 501 | L501I | CtT | AtC | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp2 | 501 | L501H | cTt | cAt | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctG | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp2 | 501 | L501P | cTT | cCG | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctG | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 501 | L501P | cTT | cCC | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctA | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 501 | L501P | cTT | cCC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 501 | L501P | cTt | cCt | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.1.44 | 0.004819 |
ORF1ab/nsp2 | 501 | L501R | cTt | cGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 501 | L501H | cTt | cAt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.12 | 0.016 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctA | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 501 | L501del1 | CtT | -tC | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 501 | L501del1 | cTt | c-t | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.293 | 0.025 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.36.12 | 0.019231 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp2 | 501 | L501R | cTt | cGt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | B.1.631 | 0.006734 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | C.1.2 | 0.008511 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 501 | L501A | CTT | GCA | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 501 | L501R | cTt | cGt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp2 | 501 | L501del1 | CTT | WY- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctA | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 501 | L501del1 | ctT | ct- | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 501 | L501R | cTt | cGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 501 | L501R | cTt | cGt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 501 | L501R | cTt | cGt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 501 | L501R | cTt | cGt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 501 | L501V | Ctt | Gtt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 501 | L501del1 | cTt | c-t | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 501 | L501R | cTt | cGt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 501 | L501V | Ctt | Gtt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 501 | L501del1 | ctT | ct- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 501 | L501R | cTt | cGt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctA | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp2 | 501 | L501A | CTT | GCA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 501 | L501del1 | CTt | -Ct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.177.28 | 0.007407 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.304 | 0.023256 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.328 | 0.03125 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp2 | 501 | L501V | Ctt | Gtt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp2 | 501 | L501F | CtT | TtC | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp2 | 501 | L501I | Ctt | Att | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 501 | L501P | cTT | cCA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 501 | L501del1 | cTt | c-t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp2 | 501 | L501R | cTt | cGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 501 | L501L | ctT | ctC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 501 | L501del | CTT | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 501 | L501F | Ctt | Ttt | 1 | 1 | P.4 | 0.003802 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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