CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 496

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2496Q496PQ676PnonsyncAgcCg303530300.9983532291-2293
ORF1ab/nsp2496Q496PQ676PnonsyncAGcCA303540.001317962291-2293
ORF1ab/nsp2496Q496PQ676PnonsyncAGcCT303510.0003294892291-2293
ORF1ab/nsp2496Q496HQ676HnonsyncaGcaT107010190.9523362291-2293
ORF1ab/nsp2496Q496HQ676HnonsyncaGcaC1070510.04766362291-2293
ORF1ab/nsp2496Q496QQ676QsyncaGcaA20920912291-2293
ORF1ab/nsp2496Q496RQ676RnonsyncAgcGg1811740.9613262291-2293
ORF1ab/nsp2496Q496RQ676RnonsynCAgAGg18120.01104972291-2293
ORF1ab/nsp2496Q496RQ676RnonsyncAGcGA18120.01104972291-2293
ORF1ab/nsp2496Q496RQ676RnonsyncAGcGT18110.005524862291-2293
ORF1ab/nsp2496Q496RQ676RnonsyncAGcGC18110.005524862291-2293
ORF1ab/nsp2496Q496RQ676RnonsynCAGAGA18110.005524862291-2293
ORF1ab/nsp2496Q496delQ676deldelCAG---828212291-2293
ORF1ab/nsp2496Q496LQ676LnonsyncAgcTg49470.9591842291-2293
ORF1ab/nsp2496Q496LQ676LnonsynCAGTTA4910.02040822291-2293
ORF1ab/nsp2496Q496LQ676LnonsynCAgTTg4910.02040822291-2293
ORF1ab/nsp2496Q496XQ676XnonsynCagTag40390.9752291-2293
ORF1ab/nsp2496Q496XQ676XnonsynCaGTaA4010.0252291-2293
ORF1ab/nsp2496Q496KQ676KnonsynCagAag23220.9565222291-2293
ORF1ab/nsp2496Q496KQ676KnonsynCaGAaA2310.04347832291-2293
ORF1ab/nsp2496Q496EQ676EnonsynCagGag181812291-2293
ORF1ab/nsp2496Q496SQ676SnonsynCAgTCg15140.9333332291-2293
ORF1ab/nsp2496Q496SQ676SnonsynCAGTCC1510.06666672291-2293
ORF1ab/nsp2496Q496YQ676YnonsynCaGTaC530.62291-2293
ORF1ab/nsp2496Q496TQ676TnonsynCAGACC520.42291-2293
ORF1ab/nsp2496Q496YQ676YnonsynCaGTaT520.42291-2293
ORF1ab/nsp2496Q496TQ676TnonsynCAgACg520.42291-2293
ORF1ab/nsp2496Q496TQ676TnonsynCAGACA510.22291-2293
ORF1ab/nsp2496Q496del1Q676del1delcaGca-420.52291-2293
ORF1ab/nsp2496Q496del1Q676del1delCaG-aC410.252291-2293
ORF1ab/nsp2496Q496del1Q676del1delcAgc-g410.252291-2293
ORF1ab/nsp2496Q496FQ676FnonsynCAGTTC320.6666672291-2293
ORF1ab/nsp2496Q496FQ676FnonsynCAGTTT310.3333332291-2293
ORF1ab/nsp2496Q496del2Q676del2delcAGc--2212291-2293
ORF1ab/nsp2496Q496NQ676NnonsynCaGAaT2212291-2293
ORF1ab/nsp2496Q496WQ676WnonsynCAgTGg2212291-2293
ORF1ab/nsp2496Q496AQ676AnonsynCAGGCC210.52291-2293
ORF1ab/nsp2496Q496IQ676InonsynCAGATT210.52291-2293
ORF1ab/nsp2496Q496AQ676AnonsynCAgGCg210.52291-2293
ORF1ab/nsp2496Q496IQ676InonsynCAGATA210.52291-2293
ORF1ab/nsp2496Q496CQ676CnonsynCAGTGC1112291-2293

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2496Q496PcAgcCg30303035All0.00058
ORF1ab/nsp2496Q496PcAGcCA43035All0.000001
ORF1ab/nsp2496Q496PcAGcCT13035All0
ORF1ab/nsp2496Q496PcAgcCg28752878AY.530.826624
ORF1ab/nsp2496Q496PcAGcCA22878AY.530.000575
ORF1ab/nsp2496Q496PcAGcCT12878AY.530.000288
ORF1ab/nsp2496Q496HcaGcaT10191070All0.000195
ORF1ab/nsp2496Q496HcaGcaC511070All0.00001
ORF1ab/nsp2496Q496QcaGcaA209209All0.00004
ORF1ab/nsp2496Q496RcAgcGg174181All0.000033
ORF1ab/nsp2496Q496RcAGcGA2181All0
ORF1ab/nsp2496Q496RCAgAGg2181All0
ORF1ab/nsp2496Q496RcAGcGC1181All0
ORF1ab/nsp2496Q496RcAGcGT1181All0
ORF1ab/nsp2496Q496RCAGAGA1181All0
ORF1ab/nsp2496Q496HcaGcaT133133B.1.1.4320.168354
ORF1ab/nsp2496Q496HcaGcaT113127B.1.1.70.000101
ORF1ab/nsp2496Q496HcaGcaC14127B.1.1.70.000013
ORF1ab/nsp2496Q496HcaGcaT9191AY.40.000142
ORF1ab/nsp2496Q496delCAG---8282All0.000016
ORF1ab/nsp2496Q496HcaGcaT7979AY.460.008222
ORF1ab/nsp2496Q496HcaGcaT7579B.1.617.20.000282
ORF1ab/nsp2496Q496HcaGcaC479B.1.617.20.000015
ORF1ab/nsp2496Q496QcaGcaA7575B.1.1.70.000067
ORF1ab/nsp2496Q496PcAgcCg5757B.1.1130.890625
ORF1ab/nsp2496Q496HcaGcaT5757B.1.177.750.059313
ORF1ab/nsp2496Q496HcaGcaT5353AY.160.020121
ORF1ab/nsp2496Q496RcAgcGg5353P.10.000835
ORF1ab/nsp2496Q496LcAgcTg4749All0.000009
ORF1ab/nsp2496Q496LCAGTTA149All0
ORF1ab/nsp2496Q496LCAgTTg149All0
ORF1ab/nsp2496Q496HcaGcaT3843B.10.000348
ORF1ab/nsp2496Q496HcaGcaC543B.10.000046
ORF1ab/nsp2496Q496XCagTag3940All0.000007
ORF1ab/nsp2496Q496XCaGTaA140All0
ORF1ab/nsp2496Q496HcaGcaT4040B.1.36.80.04
ORF1ab/nsp2496Q496PcAgcCg3838AY.40.000059
ORF1ab/nsp2496Q496HcaGcaT3535AY.100.018548
ORF1ab/nsp2496Q496HcaGcaT3032AY.440.000183
ORF1ab/nsp2496Q496HcaGcaC232AY.440.000012
ORF1ab/nsp2496Q496QcaGcaA2626C.160.027572
ORF1ab/nsp2496Q496QcaGcaA2525B.1.177.820.011933
ORF1ab/nsp2496Q496KCagAag2223All0.000004
ORF1ab/nsp2496Q496KCaGAaA123All0
ORF1ab/nsp2496Q496delCAG---2323B.1.1.70.000021
ORF1ab/nsp2496Q496HcaGcaT2222AY.30.000219
ORF1ab/nsp2496Q496RcAgcGg2020B.1.1.70.000018
ORF1ab/nsp2496Q496LcAgcTg1919B.1.1.70.000017
ORF1ab/nsp2496Q496ECagGag1818All0.000003
ORF1ab/nsp2496Q496RcAgcGg1616AY.260.000453
ORF1ab/nsp2496Q496SCAgTCg1415All0.000003
ORF1ab/nsp2496Q496SCAGTCC115All0
ORF1ab/nsp2496Q496HcaGcaT1313AY.260.000368
ORF1ab/nsp2496Q496SCAgTCg1313AY.530.003738
ORF1ab/nsp2496Q496PcAgcCg1111B.1.617.20.000041
ORF1ab/nsp2496Q496HcaGcaT910AY.1020.000239
ORF1ab/nsp2496Q496HcaGcaC110AY.1020.000027
ORF1ab/nsp2496Q496HcaGcaT1010AY.430.000044
ORF1ab/nsp2496Q496HcaGcaT1010B.1.20.000088
ORF1ab/nsp2496Q496QcaGcaA99AY.120.10.002889
ORF1ab/nsp2496Q496HcaGcaT99AY.330.000601
ORF1ab/nsp2496Q496KCagAag99AY.40.000014
ORF1ab/nsp2496Q496RcAgcGg89AY.430.000035
ORF1ab/nsp2496Q496RcAGcGT19AY.430.000004
ORF1ab/nsp2496Q496LcAgcTg99AY.530.002588
ORF1ab/nsp2496Q496delCAG---880.444444
ORF1ab/nsp2496Q496PcAgcCg78B.10.000064
ORF1ab/nsp2496Q496RcAgcGg58B.10.000046
ORF1ab/nsp2496Q496RcAGcGA18B.10.000009
ORF1ab/nsp2496Q496RCAGAGA18B.10.000009
ORF1ab/nsp2496Q496PcAGcCA18B.10.000009
ORF1ab/nsp2496Q496RCAgAGg18B.10.000009
ORF1ab/nsp2496Q496HcaGcaC58B.1.10.000091
ORF1ab/nsp2496Q496HcaGcaT38B.1.10.000054
ORF1ab/nsp2496Q496PcAgcCg88B.1.2470.119403
ORF1ab/nsp2496Q496HcaGcaT88C.140.034632
ORF1ab/nsp2496Q496HcaGcaT68P.10.000095
ORF1ab/nsp2496Q496HcaGcaC28P.10.000032
ORF1ab/nsp2496Q496HcaGcaT77AY.250.000042
ORF1ab/nsp2496Q496RcAgcGg77AY.330.000467
ORF1ab/nsp2496Q496HcaGcaT77AY.450.000852
ORF1ab/nsp2496Q496HcaGcaT77AY.630.002708
ORF1ab/nsp2496Q496HcaGcaT67B0.000767
ORF1ab/nsp2496Q496HcaGcaC17B0.000128
ORF1ab/nsp2496Q496XCagTag77B.1.1.70.000006
ORF1ab/nsp2496Q496HcaGcaT77B.1.2320.003761
ORF1ab/nsp2496Q496QcaGcaA77B.1.617.20.000026
ORF1ab/nsp2496Q496QcaGcaA66AY.1020.000159
ORF1ab/nsp2496Q496HcaGcaT66AY.290.000095
ORF1ab/nsp2496Q496QcaGcaA66AY.430.000027
ORF1ab/nsp2496Q496XCagTag66B.10.000055
ORF1ab/nsp2496Q496QcaGcaA66B.10.000055
ORF1ab/nsp2496Q496delCAG---66B.1.617.20.000023
ORF1ab/nsp2496Q496RcAgcGg66B.1.617.20.000023
ORF1ab/nsp2496Q496RcAgcGg66P.1.140.000287
ORF1ab/nsp2496Q496PcAgcCg66P.1.140.000287
ORF1ab/nsp2496Q496YCaGTaC35All0.000001
ORF1ab/nsp2496Q496TCAGACC25All0
ORF1ab/nsp2496Q496TCAgACg25All0
ORF1ab/nsp2496Q496YCaGTaT25All0
ORF1ab/nsp2496Q496TCAGACA15All0
ORF1ab/nsp2496Q496HcaGcaT55AY.1030.000031
ORF1ab/nsp2496Q496HcaGcaT55AY.1190.000177
ORF1ab/nsp2496Q496RcAgcGg55AY.230.000349
ORF1ab/nsp2496Q496HcaGcaT55AY.39.1.10.003623
ORF1ab/nsp2496Q496QcaGcaA55AY.40.000008
ORF1ab/nsp2496Q496QcaGcaA55AY.50.000103
ORF1ab/nsp2496Q496delCAG---55B.10.000046
ORF1ab/nsp2496Q496HcaGcaT55B.1.177.440.002595
ORF1ab/nsp2496Q496HcaGcaT55B.1.36.120.048077
ORF1ab/nsp2496Q496HcaGcaT55B.1.5260.000118
ORF1ab/nsp2496Q496HcaGcaT55B.1.6210.000443
ORF1ab/nsp2496Q496HcaGcaT55D.20.000375
ORF1ab/nsp2496Q496del1caGca-24All0
ORF1ab/nsp2496Q496del1cAgc-g14All0
ORF1ab/nsp2496Q496del1CaG-aC14All0
ORF1ab/nsp2496Q496HcaGcaT44AY.130.000644
ORF1ab/nsp2496Q496QcaGcaA44AY.30.00004
ORF1ab/nsp2496Q496HcaGcaT44AY.390.000099
ORF1ab/nsp2496Q496RcAgcGg44AY.4.2.10.000596
ORF1ab/nsp2496Q496QcaGcaA44AY.440.000024
ORF1ab/nsp2496Q496HcaGcaT44AY.610.000419
ORF1ab/nsp2496Q496HcaGcaT44AY.70.000784
ORF1ab/nsp2496Q496ECagGag44B.1.1.70.000004
ORF1ab/nsp2496Q496HcaGcaT44B.1.1770.000053
ORF1ab/nsp2496Q496HcaGcaC34R.10.00027
ORF1ab/nsp2496Q496HcaGcaT14R.10.00009
ORF1ab/nsp2496Q496FCAGTTC23All0
ORF1ab/nsp2496Q496FCAGTTT13All0
ORF1ab/nsp2496Q496LcAgcTg33AY.1030.000019
ORF1ab/nsp2496Q496LcAgcTg33AY.40.000005
ORF1ab/nsp2496Q496RcAgcGg33AY.40.000005
ORF1ab/nsp2496Q496delCAG---33AY.430.000013
ORF1ab/nsp2496Q496PcAgcCg33AY.430.000013
ORF1ab/nsp2496Q496LcAgcTg33AY.440.000018
ORF1ab/nsp2496Q496HcaGcaT23AY.60.000082
ORF1ab/nsp2496Q496HcaGcaC13AY.60.000041
ORF1ab/nsp2496Q496KCagAag33AY.650.001599
ORF1ab/nsp2496Q496RcAgcGg33AY.700.000626
ORF1ab/nsp2496Q496RcAgcGg33AY.750.000168
ORF1ab/nsp2496Q496delCAG---33B.1.1.330.001263
ORF1ab/nsp2496Q496HcaGcaT33B.1.1.330.001263
ORF1ab/nsp2496Q496RcAgcGg33B.1.1.4640.004418
ORF1ab/nsp2496Q496YCaGTaC33B.1.1.70.000003
ORF1ab/nsp2496Q496HcaGcaT33B.1.3510.000089
ORF1ab/nsp2496Q496HcaGcaT33B.1.4620.021739
ORF1ab/nsp2496Q496HcaGcaT33B.1.5960.000261
ORF1ab/nsp2496Q496HcaGcaC33B.1.617.10.000387
ORF1ab/nsp2496Q496HcaGcaT33C.370.000348
ORF1ab/nsp2496Q496HcaGcaT33P.1.140.000143
ORF1ab/nsp2496Q496RcAgcGg33Q.30.000435
ORF1ab/nsp2496Q496PcAgcCg22A0.000774
ORF1ab/nsp2496Q496HcaGcaT22A.2.50.000998
ORF1ab/nsp2496Q496WCAgTGg22All0
ORF1ab/nsp2496Q496NCaGAaT22All0
ORF1ab/nsp2496Q496del2cAGc--22All0
ORF1ab/nsp2496Q496ICAGATT12All0
ORF1ab/nsp2496Q496ACAGGCC12All0
ORF1ab/nsp2496Q496ICAGATA12All0
ORF1ab/nsp2496Q496ACAgGCg12All0
ORF1ab/nsp2496Q496HcaGcaT22AY.1000.000092
ORF1ab/nsp2496Q496HcaGcaT22AY.1200.000074
ORF1ab/nsp2496Q496HcaGcaT22AY.230.000139
ORF1ab/nsp2496Q496HcaGcaC22AY.240.000862
ORF1ab/nsp2496Q496QcaGcaA22AY.250.000012
ORF1ab/nsp2496Q496RcAgcGg22AY.390.000049
ORF1ab/nsp2496Q496RcAgcGg22AY.4.20.000043
ORF1ab/nsp2496Q496LcAgcTg22AY.430.000009
ORF1ab/nsp2496Q496HcaGcaT22AY.46.40.000329
ORF1ab/nsp2496Q496ICAGATT12AY.46.60.000072
ORF1ab/nsp2496Q496ICAGATA12AY.46.60.000072
ORF1ab/nsp2496Q496PcAgcCg22AY.610.00021
ORF1ab/nsp2496Q496HcaGcaT22AY.640.00119
ORF1ab/nsp2496Q496ECagGag22AY.670.000929
ORF1ab/nsp2496Q496PcAgcCg22AY.750.000112
ORF1ab/nsp2496Q496HcaGcaT22AY.90.000135
ORF1ab/nsp2496Q496RcAgcGg22AY.9.10.000167
ORF1ab/nsp2496Q496HcaGcaT22AY.980.000158
ORF1ab/nsp2496Q496HcaGcaT22AY.98.10.000097
ORF1ab/nsp2496Q496RcAGcGC12AY.98.10.000048
ORF1ab/nsp2496Q496RcAgcGg12AY.98.10.000048
ORF1ab/nsp2496Q496delCAG---22AY.990.002099
ORF1ab/nsp2496Q496KCagAag22B.10.000018
ORF1ab/nsp2496Q496TCAGACA12B.10.000009
ORF1ab/nsp2496Q496TCAgACg12B.10.000009
ORF1ab/nsp2496Q496RcAgcGg22B.1.10.000036
ORF1ab/nsp2496Q496delCAG---22B.1.10.000036
ORF1ab/nsp2496Q496XCagTag22B.1.10.000036
ORF1ab/nsp2496Q496HcaGcaT22B.1.1.2440.030769
ORF1ab/nsp2496Q496delCAG---22B.1.1.3480.001592
ORF1ab/nsp2496Q496HcaGcaT22B.1.1.5190.000079
ORF1ab/nsp2496Q496PcAgcCg22B.1.1.70.000002
ORF1ab/nsp2496Q496KCagAag22B.1.1.70.000002
ORF1ab/nsp2496Q496PcAgcCg22B.1.1430.042553
ORF1ab/nsp2496Q496HcaGcaT22B.1.177.70.00033
ORF1ab/nsp2496Q496XCagTag22B.1.20.000018
ORF1ab/nsp2496Q496LcAgcTg22B.1.20.000018
ORF1ab/nsp2496Q496QcaGcaA22B.1.20.000018
ORF1ab/nsp2496Q496PcAgcCg22B.1.20.000018
ORF1ab/nsp2496Q496QcaGcaA22B.1.2410.001623
ORF1ab/nsp2496Q496QcaGcaA22B.1.3360.004878
ORF1ab/nsp2496Q496HcaGcaT22B.1.360.000292
ORF1ab/nsp2496Q496HcaGcaC22B.1.3750.001639
ORF1ab/nsp2496Q496delCAG---22B.1.4240.016129
ORF1ab/nsp2496Q496HcaGcaT22B.1.4290.000047
ORF1ab/nsp2496Q496delCAG---22B.1.4290.000047
ORF1ab/nsp2496Q496HcaGcaT22B.1.5950.000522
ORF1ab/nsp2496Q496TCAGACC12B.1.617.20.000004
ORF1ab/nsp2496Q496TCAgACg12B.1.617.20.000004
ORF1ab/nsp2496Q496ACAgGCg12B.1.617.20.000004
ORF1ab/nsp2496Q496ACAGGCC12B.1.617.20.000004
ORF1ab/nsp2496Q496ECagGag22C.90.060606
ORF1ab/nsp2496Q496delCAG---22N.60.014184
ORF1ab/nsp2496Q496QcaGcaA22P.10.000032
ORF1ab/nsp2496Q496KCagAag110.055556
ORF1ab/nsp2496Q496ECagGag110.055556
ORF1ab/nsp2496Q496HcaGcaC11A.2.20.001689
ORF1ab/nsp2496Q496RcAgcGg11A.2.40.003367
ORF1ab/nsp2496Q496HcaGcaC11A.23.10.000704
ORF1ab/nsp2496Q496QcaGcaA11A.23.10.000704
ORF1ab/nsp2496Q496HcaGcaT11A.270.001656
ORF1ab/nsp2496Q496XCagTag11A.50.001923
ORF1ab/nsp2496Q496CCAGTGC11All0
ORF1ab/nsp2496Q496ECagGag11AY.100.00053
ORF1ab/nsp2496Q496PcAgcCg11AY.100.00053
ORF1ab/nsp2496Q496QcaGcaA11AY.1030.000006
ORF1ab/nsp2496Q496HcaGcaT11AY.1060.000335
ORF1ab/nsp2496Q496QcaGcaA11AY.1060.000335
ORF1ab/nsp2496Q496delCAG---11AY.1080.001103
ORF1ab/nsp2496Q496PcAgcCg11AY.1130.000142
ORF1ab/nsp2496Q496HcaGcaT11AY.1170.000085
ORF1ab/nsp2496Q496PcAgcCg11AY.1190.000035
ORF1ab/nsp2496Q496QcaGcaA11AY.1200.000037
ORF1ab/nsp2496Q496RcAGcGA11AY.120.10.000321
ORF1ab/nsp2496Q496HcaGcaT11AY.120.20.001285
ORF1ab/nsp2496Q496XCagTag11AY.120.2.10.000498
ORF1ab/nsp2496Q496KCagAag11AY.130.000161
ORF1ab/nsp2496Q496PcAgcCg11AY.130.000161
ORF1ab/nsp2496Q496HcaGcaT11AY.16.10.00047
ORF1ab/nsp2496Q496QcaGcaA11AY.200.000039
ORF1ab/nsp2496Q496delCAG---11AY.230.00007
ORF1ab/nsp2496Q496XCagTag11AY.230.00007
ORF1ab/nsp2496Q496XCagTag11AY.250.000006
ORF1ab/nsp2496Q496delCAG---11AY.250.000006
ORF1ab/nsp2496Q496PcAGcCA11AY.260.000028
ORF1ab/nsp2496Q496QcaGcaA11AY.270.000065
ORF1ab/nsp2496Q496delCAG---11AY.29.10.000221
ORF1ab/nsp2496Q496RcAgcGg11AY.30.00001
ORF1ab/nsp2496Q496KCagAag11AY.30.00001
ORF1ab/nsp2496Q496PcAgcCg11AY.300.000396
ORF1ab/nsp2496Q496HcaGcaT11AY.300.000396
ORF1ab/nsp2496Q496delCAG---11AY.350.000233
ORF1ab/nsp2496Q496HcaGcaT11AY.360.000148
ORF1ab/nsp2496Q496XCagTag11AY.360.000148
ORF1ab/nsp2496Q496QcaGcaA11AY.360.000148
ORF1ab/nsp2496Q496PcAgcCg11AY.380.000499
ORF1ab/nsp2496Q496QcaGcaA11AY.390.000025
ORF1ab/nsp2496Q496del1CaG-aC11AY.390.000025
ORF1ab/nsp2496Q496XCagTag11AY.390.000025
ORF1ab/nsp2496Q496ECagGag11AY.390.000025
ORF1ab/nsp2496Q496XCagTag11AY.39.10.00004
ORF1ab/nsp2496Q496delCAG---11AY.40.000002
ORF1ab/nsp2496Q496ECagGag11AY.40.000002
ORF1ab/nsp2496Q496QcaGcaA11AY.4.20.000022
ORF1ab/nsp2496Q496QcaGcaA11AY.4.50.000107
ORF1ab/nsp2496Q496QcaGcaA11AY.420.00004
ORF1ab/nsp2496Q496HcaGcaT11AY.420.00004
ORF1ab/nsp2496Q496PcAgcCg11AY.420.00004
ORF1ab/nsp2496Q496RcAgcGg11AY.420.00004
ORF1ab/nsp2496Q496XCagTag11AY.430.000004
ORF1ab/nsp2496Q496RCAgAGg11AY.440.000006
ORF1ab/nsp2496Q496PcAgcCg11AY.440.000006
ORF1ab/nsp2496Q496WCAgTGg11AY.440.000006
ORF1ab/nsp2496Q496delCAG---11AY.440.000006
ORF1ab/nsp2496Q496ECagGag11AY.450.000122
ORF1ab/nsp2496Q496delCAG---11AY.460.000104
ORF1ab/nsp2496Q496YCaGTaT11AY.46.60.000072
ORF1ab/nsp2496Q496LCAGTTA11AY.46.60.000072
ORF1ab/nsp2496Q496HcaGcaT11AY.46.60.000072
ORF1ab/nsp2496Q496QcaGcaA11AY.46.60.000072
ORF1ab/nsp2496Q496KCaGAaA11AY.46.60.000072
ORF1ab/nsp2496Q496NCaGAaT11AY.46.60.000072
ORF1ab/nsp2496Q496FCAGTTT11AY.46.60.000072
ORF1ab/nsp2496Q496XCaGTaA11AY.46.60.000072
ORF1ab/nsp2496Q496PcAgcCg11AY.470.000031
ORF1ab/nsp2496Q496XCagTag11AY.50.000021
ORF1ab/nsp2496Q496HcaGcaT11AY.50.000021
ORF1ab/nsp2496Q496PcAgcCg11AY.540.000095
ORF1ab/nsp2496Q496RcAgcGg11AY.540.000095
ORF1ab/nsp2496Q496QcaGcaA11AY.60.000041
ORF1ab/nsp2496Q496RcAgcGg11AY.60.000041
ORF1ab/nsp2496Q496QcaGcaA11AY.610.000105
ORF1ab/nsp2496Q496HcaGcaT11AY.650.000533
ORF1ab/nsp2496Q496SCAgTCg11AY.670.000464
ORF1ab/nsp2496Q496delCAG---11AY.670.000464
ORF1ab/nsp2496Q496HcaGcaT11AY.700.000209
ORF1ab/nsp2496Q496RcAgcGg11AY.740.000116
ORF1ab/nsp2496Q496HcaGcaT11AY.750.000056
ORF1ab/nsp2496Q496delCAG---11AY.750.000056
ORF1ab/nsp2496Q496HcaGcaT11AY.75.10.00018
ORF1ab/nsp2496Q496LcAgcTg11AY.790.001211
ORF1ab/nsp2496Q496delCAG---11AY.840.000437
ORF1ab/nsp2496Q496RcAgcGg11AY.840.000437
ORF1ab/nsp2496Q496HcaGcaT11AY.9.20.000037
ORF1ab/nsp2496Q496delCAG---11AY.9.20.000037
ORF1ab/nsp2496Q496HcaGcaT11AY.920.000287
ORF1ab/nsp2496Q496ECagGag11AY.99.20.000092
ORF1ab/nsp2496Q496RcAgcGg11AY.99.20.000092
ORF1ab/nsp2496Q496CCAGTGC11B.10.000009
ORF1ab/nsp2496Q496WCAgTGg11B.10.000009
ORF1ab/nsp2496Q496FCAGTTC11B.10.000009
ORF1ab/nsp2496Q496LCAgTTg11B.10.000009
ORF1ab/nsp2496Q496PcAgcCg11B.1.10.000018
ORF1ab/nsp2496Q496LcAgcTg11B.1.10.000018
ORF1ab/nsp2496Q496HcaGcaT11B.1.1.1210.002427
ORF1ab/nsp2496Q496XCagTag11B.1.1.1380.006061
ORF1ab/nsp2496Q496QcaGcaA11B.1.1.1920.002309
ORF1ab/nsp2496Q496HcaGcaT11B.1.1.2050.003717
ORF1ab/nsp2496Q496HcaGcaT11B.1.1.2140.000055
ORF1ab/nsp2496Q496HcaGcaT11B.1.1.2220.000204
ORF1ab/nsp2496Q496HcaGcaT11B.1.1.2430.004082
ORF1ab/nsp2496Q496XCagTag11B.1.1.3060.000438
ORF1ab/nsp2496Q496HcaGcaC11B.1.1.3060.000438
ORF1ab/nsp2496Q496KCagAag11B.1.1.3340.016393
ORF1ab/nsp2496Q496XCagTag11B.1.1.370.000193
ORF1ab/nsp2496Q496HcaGcaT11B.1.1.4090.002833
ORF1ab/nsp2496Q496delCAG---11B.1.1.4160.000905
ORF1ab/nsp2496Q496RcAgcGg11B.1.1.4330.001425
ORF1ab/nsp2496Q496ECagGag11B.1.1.4670.019231
ORF1ab/nsp2496Q496del2cAGc--11B.1.1.5230.001563
ORF1ab/nsp2496Q496XCagTag11B.1.1.5230.001563
ORF1ab/nsp2496Q496del1caGca-11B.1.1.70.000001
ORF1ab/nsp2496Q496SCAGTCC11B.1.1.70.000001
ORF1ab/nsp2496Q496TCAGACC11B.1.1.70.000001
ORF1ab/nsp2496Q496del2cAGc--11B.1.1.70.000001
ORF1ab/nsp2496Q496del1cAgc-g11B.1.1130.015625
ORF1ab/nsp2496Q496RcAgcGg11B.1.1180.006711
ORF1ab/nsp2496Q496NCaGAaT11B.1.1600.000031
ORF1ab/nsp2496Q496HcaGcaT11B.1.1600.000031
ORF1ab/nsp2496Q496QcaGcaA11B.1.1600.000031
ORF1ab/nsp2496Q496RcAgcGg11B.1.160.160.000929
ORF1ab/nsp2496Q496HcaGcaT11B.1.160.160.000929
ORF1ab/nsp2496Q496delCAG---11B.1.1770.000013
ORF1ab/nsp2496Q496LcAgcTg11B.1.1770.000013
ORF1ab/nsp2496Q496XCagTag11B.1.1770.000013
ORF1ab/nsp2496Q496HcaGcaT11B.1.177.210.000076
ORF1ab/nsp2496Q496HcaGcaT11B.1.177.570.000281
ORF1ab/nsp2496Q496FCAGTTC11B.1.177.730.000566
ORF1ab/nsp2496Q496RcAgcGg11B.1.177.810.000189
ORF1ab/nsp2496Q496XCagTag11B.1.177.830.001481
ORF1ab/nsp2496Q496delCAG---11B.1.1790.003759
ORF1ab/nsp2496Q496RcAgcGg11B.1.20.000009
ORF1ab/nsp2496Q496QcaGcaA11B.1.2210.000071
ORF1ab/nsp2496Q496XCagTag11B.1.2340.000132
ORF1ab/nsp2496Q496RcAgcGg11B.1.2580.000067
ORF1ab/nsp2496Q496HcaGcaT11B.1.2740.011905
ORF1ab/nsp2496Q496KCagAag11B.1.3490.000715
ORF1ab/nsp2496Q496ECagGag11B.1.3510.00003
ORF1ab/nsp2496Q496XCagTag11B.1.3510.00003
ORF1ab/nsp2496Q496QcaGcaA11B.1.3510.00003
ORF1ab/nsp2496Q496HcaGcaT11B.1.36.390.002217
ORF1ab/nsp2496Q496PcAgcCg11B.1.36.80.001
ORF1ab/nsp2496Q496HcaGcaT11B.1.3630.012987
ORF1ab/nsp2496Q496XCagTag11B.1.3690.000285
ORF1ab/nsp2496Q496XCagTag11B.1.4000.000429
ORF1ab/nsp2496Q496delCAG---11B.1.416.10.001563
ORF1ab/nsp2496Q496HcaGcaT11B.1.4270.00005
ORF1ab/nsp2496Q496QcaGcaA11B.1.4270.00005
ORF1ab/nsp2496Q496ECagGag11B.1.4290.000024
ORF1ab/nsp2496Q496RcAgcGg11B.1.4290.000024
ORF1ab/nsp2496Q496HcaGcaT11B.1.466.20.000391
ORF1ab/nsp2496Q496LcAgcTg11B.1.4970.000315
ORF1ab/nsp2496Q496delCAG---11B.1.5260.000024
ORF1ab/nsp2496Q496HcaGcaT11B.1.5460.003704
ORF1ab/nsp2496Q496delCAG---11B.1.5610.000397
ORF1ab/nsp2496Q496XCagTag11B.1.5640.000426
ORF1ab/nsp2496Q496HcaGcaT11B.1.5640.000426
ORF1ab/nsp2496Q496RcAgcGg11B.1.5750.000303
ORF1ab/nsp2496Q496HcaGcaT11B.1.5760.000907
ORF1ab/nsp2496Q496RcAgcGg11B.1.5820.000491
ORF1ab/nsp2496Q496LcAgcTg11B.1.617.10.000129
ORF1ab/nsp2496Q496LcAgcTg11B.1.617.20.000004
ORF1ab/nsp2496Q496YCaGTaT11B.1.617.20.000004
ORF1ab/nsp2496Q496del1caGca-11B.1.617.20.000004
ORF1ab/nsp2496Q496HcaGcaC11B.1.6200.000946
ORF1ab/nsp2496Q496QcaGcaA11B.1.6210.000089
ORF1ab/nsp2496Q496PcAgcCg11B.1.6230.000536
ORF1ab/nsp2496Q496KCagAag11B.1.6340.003425
ORF1ab/nsp2496Q496delCAG---11B.340.013699
ORF1ab/nsp2496Q496delCAG---11B.570.015152
ORF1ab/nsp2496Q496XCagTag11B.60.00091
ORF1ab/nsp2496Q496HcaGcaC11B.600.015873
ORF1ab/nsp2496Q496ECagGag11C.370.000116
ORF1ab/nsp2496Q496RcAgcGg11C.370.000116
ORF1ab/nsp2496Q496XCagTag11D.20.000075
ORF1ab/nsp2496Q496delCAG---11P.10.000016
ORF1ab/nsp2496Q496HcaGcaC11P.1.170.000162
ORF1ab/nsp2496Q496RcAgcGg11P.1.17.10.000875
ORF1ab/nsp2496Q496QcaGcaA11P.1.70.000319
ORF1ab/nsp2496Q496RcAgcGg11P.20.000187
ORF1ab/nsp2496Q496delCAG---11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.