CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 496

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2496Q496PQ676PnonsyncAgcCg303530300.9983532291-2293
ORF1ab/nsp2496Q496PQ676PnonsyncAGcCA303540.001317962291-2293
ORF1ab/nsp2496Q496PQ676PnonsyncAGcCT303510.0003294892291-2293
ORF1ab/nsp2496Q496HQ676HnonsyncaGcaT107010190.9523362291-2293
ORF1ab/nsp2496Q496HQ676HnonsyncaGcaC1070510.04766362291-2293
ORF1ab/nsp2496Q496QQ676QsyncaGcaA20920912291-2293
ORF1ab/nsp2496Q496RQ676RnonsyncAgcGg1811740.9613262291-2293
ORF1ab/nsp2496Q496RQ676RnonsynCAgAGg18120.01104972291-2293
ORF1ab/nsp2496Q496RQ676RnonsyncAGcGA18120.01104972291-2293
ORF1ab/nsp2496Q496RQ676RnonsyncAGcGT18110.005524862291-2293
ORF1ab/nsp2496Q496RQ676RnonsyncAGcGC18110.005524862291-2293
ORF1ab/nsp2496Q496RQ676RnonsynCAGAGA18110.005524862291-2293
ORF1ab/nsp2496Q496delQ676deldelCAG---828212291-2293
ORF1ab/nsp2496Q496LQ676LnonsyncAgcTg49470.9591842291-2293
ORF1ab/nsp2496Q496LQ676LnonsynCAGTTA4910.02040822291-2293
ORF1ab/nsp2496Q496LQ676LnonsynCAgTTg4910.02040822291-2293
ORF1ab/nsp2496Q496XQ676XnonsynCagTag40390.9752291-2293
ORF1ab/nsp2496Q496XQ676XnonsynCaGTaA4010.0252291-2293
ORF1ab/nsp2496Q496KQ676KnonsynCagAag23220.9565222291-2293
ORF1ab/nsp2496Q496KQ676KnonsynCaGAaA2310.04347832291-2293
ORF1ab/nsp2496Q496EQ676EnonsynCagGag181812291-2293
ORF1ab/nsp2496Q496SQ676SnonsynCAgTCg15140.9333332291-2293
ORF1ab/nsp2496Q496SQ676SnonsynCAGTCC1510.06666672291-2293
ORF1ab/nsp2496Q496YQ676YnonsynCaGTaC530.62291-2293
ORF1ab/nsp2496Q496TQ676TnonsynCAGACC520.42291-2293
ORF1ab/nsp2496Q496YQ676YnonsynCaGTaT520.42291-2293
ORF1ab/nsp2496Q496TQ676TnonsynCAgACg520.42291-2293
ORF1ab/nsp2496Q496TQ676TnonsynCAGACA510.22291-2293
ORF1ab/nsp2496Q496del1Q676del1delcaGca-420.52291-2293
ORF1ab/nsp2496Q496del1Q676del1delCaG-aC410.252291-2293
ORF1ab/nsp2496Q496del1Q676del1delcAgc-g410.252291-2293
ORF1ab/nsp2496Q496FQ676FnonsynCAGTTC320.6666672291-2293
ORF1ab/nsp2496Q496FQ676FnonsynCAGTTT310.3333332291-2293
ORF1ab/nsp2496Q496del2Q676del2delcAGc--2212291-2293
ORF1ab/nsp2496Q496NQ676NnonsynCaGAaT2212291-2293
ORF1ab/nsp2496Q496WQ676WnonsynCAgTGg2212291-2293
ORF1ab/nsp2496Q496AQ676AnonsynCAGGCC210.52291-2293
ORF1ab/nsp2496Q496IQ676InonsynCAGATT210.52291-2293
ORF1ab/nsp2496Q496AQ676AnonsynCAgGCg210.52291-2293
ORF1ab/nsp2496Q496IQ676InonsynCAGATA210.52291-2293
ORF1ab/nsp2496Q496CQ676CnonsynCAGTGC1112291-2293

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2496Q496PcAgcCg30303035All0.00058
ORF1ab/nsp2496Q496PcAGcCA43035All0.000001
ORF1ab/nsp2496Q496PcAGcCT13035All0
ORF1ab/nsp2496Q496PcAgcCg28752878AY.530.826624
ORF1ab/nsp2496Q496PcAGcCA22878AY.530.000575
ORF1ab/nsp2496Q496PcAGcCT12878AY.530.000288
ORF1ab/nsp2496Q496HcaGcaT10191070All0.000195
ORF1ab/nsp2496Q496HcaGcaC511070All0.00001
ORF1ab/nsp2496Q496QcaGcaA209209All0.00004
ORF1ab/nsp2496Q496RcAgcGg174181All0.000033
ORF1ab/nsp2496Q496RcAGcGA2181All0
ORF1ab/nsp2496Q496RCAgAGg2181All0
ORF1ab/nsp2496Q496RcAGcGC1181All0
ORF1ab/nsp2496Q496RcAGcGT1181All0
ORF1ab/nsp2496Q496RCAGAGA1181All0
ORF1ab/nsp2496Q496HcaGcaT133133B.1.1.4320.168354
ORF1ab/nsp2496Q496HcaGcaT113127B.1.1.70.000101
ORF1ab/nsp2496Q496HcaGcaC14127B.1.1.70.000013
ORF1ab/nsp2496Q496HcaGcaT9191AY.40.000142
ORF1ab/nsp2496Q496delCAG---8282All0.000016
ORF1ab/nsp2496Q496HcaGcaT7979AY.460.008222
ORF1ab/nsp2496Q496HcaGcaT7579B.1.617.20.000282
ORF1ab/nsp2496Q496HcaGcaC479B.1.617.20.000015
ORF1ab/nsp2496Q496QcaGcaA7575B.1.1.70.000067
ORF1ab/nsp2496Q496PcAgcCg5757B.1.1130.890625
ORF1ab/nsp2496Q496HcaGcaT5757B.1.177.750.059313
ORF1ab/nsp2496Q496HcaGcaT5353AY.160.020121
ORF1ab/nsp2496Q496RcAgcGg5353P.10.000835
ORF1ab/nsp2496Q496LcAgcTg4749All0.000009
ORF1ab/nsp2496Q496LCAGTTA149All0
ORF1ab/nsp2496Q496LCAgTTg149All0
ORF1ab/nsp2496Q496HcaGcaT3843B.10.000348
ORF1ab/nsp2496Q496HcaGcaC543B.10.000046
ORF1ab/nsp2496Q496XCagTag3940All0.000007
ORF1ab/nsp2496Q496XCaGTaA140All0
ORF1ab/nsp2496Q496HcaGcaT4040B.1.36.80.04
ORF1ab/nsp2496Q496PcAgcCg3838AY.40.000059
ORF1ab/nsp2496Q496HcaGcaT3535AY.100.018548
ORF1ab/nsp2496Q496HcaGcaT3032AY.440.000183
ORF1ab/nsp2496Q496HcaGcaC232AY.440.000012
ORF1ab/nsp2496Q496QcaGcaA2626C.160.027572
ORF1ab/nsp2496Q496QcaGcaA2525B.1.177.820.011933
ORF1ab/nsp2496Q496KCagAag2223All0.000004
ORF1ab/nsp2496Q496KCaGAaA123All0
ORF1ab/nsp2496Q496delCAG---2323B.1.1.70.000021
ORF1ab/nsp2496Q496HcaGcaT2222AY.30.000219
ORF1ab/nsp2496Q496RcAgcGg2020B.1.1.70.000018
ORF1ab/nsp2496Q496LcAgcTg1919B.1.1.70.000017
ORF1ab/nsp2496Q496ECagGag1818All0.000003
ORF1ab/nsp2496Q496RcAgcGg1616AY.260.000453
ORF1ab/nsp2496Q496SCAgTCg1415All0.000003
ORF1ab/nsp2496Q496SCAGTCC115All0
ORF1ab/nsp2496Q496HcaGcaT1313AY.260.000368
ORF1ab/nsp2496Q496SCAgTCg1313AY.530.003738
ORF1ab/nsp2496Q496PcAgcCg1111B.1.617.20.000041
ORF1ab/nsp2496Q496HcaGcaT910AY.1020.000239
ORF1ab/nsp2496Q496HcaGcaC110AY.1020.000027
ORF1ab/nsp2496Q496HcaGcaT1010AY.430.000044
ORF1ab/nsp2496Q496HcaGcaT1010B.1.20.000088
ORF1ab/nsp2496Q496QcaGcaA99AY.120.10.002889
ORF1ab/nsp2496Q496HcaGcaT99AY.330.000601
ORF1ab/nsp2496Q496KCagAag99AY.40.000014
ORF1ab/nsp2496Q496RcAgcGg89AY.430.000035
ORF1ab/nsp2496Q496RcAGcGT19AY.430.000004
ORF1ab/nsp2496Q496LcAgcTg99AY.530.002588
ORF1ab/nsp2496Q496delCAG---880.444444
ORF1ab/nsp2496Q496PcAgcCg78B.10.000064
ORF1ab/nsp2496Q496RcAgcGg58B.10.000046
ORF1ab/nsp2496Q496RcAGcGA18B.10.000009
ORF1ab/nsp2496Q496RCAGAGA18B.10.000009
ORF1ab/nsp2496Q496PcAGcCA18B.10.000009
ORF1ab/nsp2496Q496RCAgAGg18B.10.000009
ORF1ab/nsp2496Q496HcaGcaC58B.1.10.000091
ORF1ab/nsp2496Q496HcaGcaT38B.1.10.000054
ORF1ab/nsp2496Q496PcAgcCg88B.1.2470.119403
ORF1ab/nsp2496Q496HcaGcaT88C.140.034632
ORF1ab/nsp2496Q496HcaGcaT68P.10.000095
ORF1ab/nsp2496Q496HcaGcaC28P.10.000032
ORF1ab/nsp2496Q496HcaGcaT77AY.250.000042
ORF1ab/nsp2496Q496RcAgcGg77AY.330.000467
ORF1ab/nsp2496Q496HcaGcaT77AY.450.000852
ORF1ab/nsp2496Q496HcaGcaT77AY.630.002708
ORF1ab/nsp2496Q496HcaGcaT67B0.000767
ORF1ab/nsp2496Q496HcaGcaC17B0.000128
ORF1ab/nsp2496Q496XCagTag77B.1.1.70.000006
ORF1ab/nsp2496Q496HcaGcaT77B.1.2320.003761
ORF1ab/nsp2496Q496QcaGcaA77B.1.617.20.000026
ORF1ab/nsp2496Q496QcaGcaA66AY.1020.000159
ORF1ab/nsp2496Q496HcaGcaT66AY.290.000095
ORF1ab/nsp2496Q496QcaGcaA66AY.430.000027
ORF1ab/nsp2496Q496XCagTag66B.10.000055
ORF1ab/nsp2496Q496QcaGcaA66B.10.000055
ORF1ab/nsp2496Q496delCAG---66B.1.617.20.000023
ORF1ab/nsp2496Q496RcAgcGg66B.1.617.20.000023
ORF1ab/nsp2496Q496RcAgcGg66P.1.140.000287
ORF1ab/nsp2496Q496PcAgcCg66P.1.140.000287
ORF1ab/nsp2496Q496YCaGTaC35All0.000001
ORF1ab/nsp2496Q496TCAGACC25All0
ORF1ab/nsp2496Q496TCAgACg25All0
ORF1ab/nsp2496Q496YCaGTaT25All0
ORF1ab/nsp2496Q496TCAGACA15All0
ORF1ab/nsp2496Q496HcaGcaT55AY.1030.000031
ORF1ab/nsp2496Q496HcaGcaT55AY.1190.000177
ORF1ab/nsp2496Q496RcAgcGg55AY.230.000349
ORF1ab/nsp2496Q496HcaGcaT55AY.39.1.10.003623
ORF1ab/nsp2496Q496QcaGcaA55AY.40.000008
ORF1ab/nsp2496Q496QcaGcaA55AY.50.000103
ORF1ab/nsp2496Q496delCAG---55B.10.000046
ORF1ab/nsp2496Q496HcaGcaT55B.1.177.440.002595
ORF1ab/nsp2496Q496HcaGcaT55B.1.36.120.048077
ORF1ab/nsp2496Q496HcaGcaT55B.1.5260.000118
ORF1ab/nsp2496Q496HcaGcaT55B.1.6210.000443
ORF1ab/nsp2496Q496HcaGcaT55D.20.000375
ORF1ab/nsp2496Q496del1caGca-24All0
ORF1ab/nsp2496Q496del1cAgc-g14All0
ORF1ab/nsp2496Q496del1CaG-aC14All0
ORF1ab/nsp2496Q496HcaGcaT44AY.130.000644
ORF1ab/nsp2496Q496QcaGcaA44AY.30.00004
ORF1ab/nsp2496Q496HcaGcaT44AY.390.000099
ORF1ab/nsp2496Q496RcAgcGg44AY.4.2.10.000596
ORF1ab/nsp2496Q496QcaGcaA44AY.440.000024
ORF1ab/nsp2496Q496HcaGcaT44AY.610.000419
ORF1ab/nsp2496Q496HcaGcaT44AY.70.000784
ORF1ab/nsp2496Q496ECagGag44B.1.1.70.000004
ORF1ab/nsp2496Q496HcaGcaT44B.1.1770.000053
ORF1ab/nsp2496Q496HcaGcaC34R.10.00027
ORF1ab/nsp2496Q496HcaGcaT14R.10.00009
ORF1ab/nsp2496Q496FCAGTTC23All0
ORF1ab/nsp2496Q496FCAGTTT13All0
ORF1ab/nsp2496Q496LcAgcTg33AY.1030.000019
ORF1ab/nsp2496Q496LcAgcTg33AY.40.000005
ORF1ab/nsp2496Q496RcAgcGg33AY.40.000005
ORF1ab/nsp2496Q496delCAG---33AY.430.000013
ORF1ab/nsp2496Q496PcAgcCg33AY.430.000013
ORF1ab/nsp2496Q496LcAgcTg33AY.440.000018
ORF1ab/nsp2496Q496HcaGcaT23AY.60.000082
ORF1ab/nsp2496Q496HcaGcaC13AY.60.000041
ORF1ab/nsp2496Q496KCagAag33AY.650.001599
ORF1ab/nsp2496Q496RcAgcGg33AY.700.000626
ORF1ab/nsp2496Q496RcAgcGg33AY.750.000168
ORF1ab/nsp2496Q496delCAG---33B.1.1.330.001263
ORF1ab/nsp2496Q496HcaGcaT33B.1.1.330.001263
ORF1ab/nsp2496Q496RcAgcGg33B.1.1.4640.004418
ORF1ab/nsp2496Q496YCaGTaC33B.1.1.70.000003
ORF1ab/nsp2496Q496HcaGcaT33B.1.3510.000089
ORF1ab/nsp2496Q496HcaGcaT33B.1.4620.021739
ORF1ab/nsp2496Q496HcaGcaT33B.1.5960.000261
ORF1ab/nsp2496Q496HcaGcaC33B.1.617.10.000387
ORF1ab/nsp2496Q496HcaGcaT33C.370.000348
ORF1ab/nsp2496Q496HcaGcaT33P.1.140.000143
ORF1ab/nsp2496Q496RcAgcGg33Q.30.000435
ORF1ab/nsp2496Q496PcAgcCg22A0.000774
ORF1ab/nsp2496Q496HcaGcaT22A.2.50.000998
ORF1ab/nsp2496Q496WCAgTGg22All0
ORF1ab/nsp2496Q496NCaGAaT22All0
ORF1ab/nsp2496Q496del2cAGc--22All0
ORF1ab/nsp2496Q496ICAGATT12All0
ORF1ab/nsp2496Q496ACAGGCC12All0
ORF1ab/nsp2496Q496ICAGATA12All0
ORF1ab/nsp2496Q496ACAgGCg12All0
ORF1ab/nsp2496Q496HcaGcaT22AY.1000.000092
ORF1ab/nsp2496Q496HcaGcaT22AY.1200.000074
ORF1ab/nsp2496Q496HcaGcaT22AY.230.000139
ORF1ab/nsp2496Q496HcaGcaC22AY.240.000862
ORF1ab/nsp2496Q496QcaGcaA22AY.250.000012
ORF1ab/nsp2496Q496RcAgcGg22AY.390.000049
ORF1ab/nsp2496Q496RcAgcGg22AY.4.20.000043
ORF1ab/nsp2496Q496LcAgcTg22AY.430.000009
ORF1ab/nsp2496Q496HcaGcaT22AY.46.40.000329
ORF1ab/nsp2496Q496ICAGATT12AY.46.60.000072
ORF1ab/nsp2496Q496ICAGATA12AY.46.60.000072
ORF1ab/nsp2496Q496PcAgcCg22AY.610.00021
ORF1ab/nsp2496Q496HcaGcaT22AY.640.00119
ORF1ab/nsp2496Q496ECagGag22AY.670.000929
ORF1ab/nsp2496Q496PcAgcCg22AY.750.000112
ORF1ab/nsp2496Q496HcaGcaT22AY.90.000135
ORF1ab/nsp2496Q496RcAgcGg22AY.9.10.000167
ORF1ab/nsp2496Q496HcaGcaT22AY.980.000158
ORF1ab/nsp2496Q496HcaGcaT22AY.98.10.000097
ORF1ab/nsp2496Q496RcAGcGC12AY.98.10.000048
ORF1ab/nsp2496Q496RcAgcGg12AY.98.10.000048
ORF1ab/nsp2496Q496delCAG---22AY.990.002099
ORF1ab/nsp2496Q496KCagAag22B.10.000018
ORF1ab/nsp2496Q496TCAGACA12B.10.000009
ORF1ab/nsp2496Q496TCAgACg12B.10.000009
ORF1ab/nsp2496Q496RcAgcGg22B.1.10.000036
ORF1ab/nsp2496Q496delCAG---22B.1.10.000036
ORF1ab/nsp2496Q496XCagTag22B.1.10.000036
ORF1ab/nsp2496Q496HcaGcaT22B.1.1.2440.030769
ORF1ab/nsp2496Q496delCAG---22B.1.1.3480.001592
ORF1ab/nsp2496Q496HcaGcaT22B.1.1.5190.000079
ORF1ab/nsp2496Q496PcAgcCg22B.1.1.70.000002
ORF1ab/nsp2496Q496KCagAag22B.1.1.70.000002
ORF1ab/nsp2496Q496PcAgcCg22B.1.1430.042553
ORF1ab/nsp2496Q496HcaGcaT22B.1.177.70.00033
ORF1ab/nsp2496Q496XCagTag22B.1.20.000018
ORF1ab/nsp2496Q496LcAgcTg22B.1.20.000018
ORF1ab/nsp2496Q496QcaGcaA22B.1.20.000018
ORF1ab/nsp2496Q496PcAgcCg22B.1.20.000018
ORF1ab/nsp2496Q496QcaGcaA22B.1.2410.001623
ORF1ab/nsp2496Q496QcaGcaA22B.1.3360.004878
ORF1ab/nsp2496Q496HcaGcaT22B.1.360.000292
ORF1ab/nsp2496Q496HcaGcaC22B.1.3750.001639
ORF1ab/nsp2496Q496delCAG---22B.1.4240.016129
ORF1ab/nsp2496Q496HcaGcaT22B.1.4290.000047
ORF1ab/nsp2496Q496delCAG---22B.1.4290.000047
ORF1ab/nsp2496Q496HcaGcaT22B.1.5950.000522
ORF1ab/nsp2496Q496TCAGACC12B.1.617.20.000004
ORF1ab/nsp2496Q496TCAgACg12B.1.617.20.000004
ORF1ab/nsp2496Q496ACAgGCg12B.1.617.20.000004
ORF1ab/nsp2496Q496ACAGGCC12B.1.617.20.000004
ORF1ab/nsp2496Q496ECagGag22C.90.060606
ORF1ab/nsp2496Q496delCAG---22N.60.014184
ORF1ab/nsp2496Q496QcaGcaA22P.10.000032
ORF1ab/nsp2496Q496KCagAag110.055556
ORF1ab/nsp2496Q496ECagGag110.055556
ORF1ab/nsp2496Q496HcaGcaC11A.2.20.001689
ORF1ab/nsp2496Q496RcAgcGg11A.2.40.003367
ORF1ab/nsp2496Q496HcaGcaC11A.23.10.000704
ORF1ab/nsp2496Q496QcaGcaA11A.23.10.000704
ORF1ab/nsp2496Q496HcaGcaT11A.270.001656
ORF1ab/nsp2496Q496XCagTag11A.50.001923
ORF1ab/nsp2496Q496CCAGTGC11All0
ORF1ab/nsp2496Q496ECagGag11AY.100.00053
ORF1ab/nsp2496Q496PcAgcCg11AY.100.00053
ORF1ab/nsp2496Q496QcaGcaA11AY.1030.000006
ORF1ab/nsp2496Q496HcaGcaT11AY.1060.000335
ORF1ab/nsp2496Q496QcaGcaA11AY.1060.000335
ORF1ab/nsp2496Q496delCAG---11AY.1080.001103
ORF1ab/nsp2496Q496PcAgcCg11AY.1130.000142
ORF1ab/nsp2496Q496HcaGcaT11AY.1170.000085
ORF1ab/nsp2496Q496PcAgcCg11AY.1190.000035
ORF1ab/nsp2496Q496QcaGcaA11AY.1200.000037
ORF1ab/nsp2496Q496RcAGcGA11AY.120.10.000321
ORF1ab/nsp2496Q496HcaGcaT11AY.120.20.001285
ORF1ab/nsp2496Q496XCagTag11AY.120.2.10.000498
ORF1ab/nsp2496Q496KCagAag11AY.130.000161
ORF1ab/nsp2496Q496PcAgcCg11AY.130.000161
ORF1ab/nsp2496Q496HcaGcaT11AY.16.10.00047
ORF1ab/nsp2496Q496QcaGcaA11AY.200.000039
ORF1ab/nsp2496Q496delCAG---11AY.230.00007
ORF1ab/nsp2496Q496XCagTag11AY.230.00007
ORF1ab/nsp2496Q496XCagTag11AY.250.000006
ORF1ab/nsp2496Q496delCAG---11AY.250.000006
ORF1ab/nsp2496Q496PcAGcCA11AY.260.000028
ORF1ab/nsp2496Q496QcaGcaA11AY.270.000065
ORF1ab/nsp2496Q496delCAG---11AY.29.10.000221
ORF1ab/nsp2496Q496RcAgcGg11AY.30.00001
ORF1ab/nsp2496Q496KCagAag11AY.30.00001
ORF1ab/nsp2496Q496PcAgcCg11AY.300.000396
ORF1ab/nsp2496Q496HcaGcaT11AY.300.000396
ORF1ab/nsp2496Q496delCAG---11AY.350.000233
ORF1ab/nsp2496Q496HcaGcaT11AY.360.000148
ORF1ab/nsp2496Q496XCagTag11AY.360.000148
ORF1ab/nsp2496Q496QcaGcaA11AY.360.000148
ORF1ab/nsp2496Q496PcAgcCg11AY.380.000499
ORF1ab/nsp2496Q496QcaGcaA11AY.390.000025
ORF1ab/nsp2496Q496del1CaG-aC11AY.390.000025
ORF1ab/nsp2496Q496XCagTag11AY.390.000025
ORF1ab/nsp2496Q496ECagGag11AY.390.000025
ORF1ab/nsp2496Q496XCagTag11AY.39.10.00004
ORF1ab/nsp2496Q496delCAG---11AY.40.000002
ORF1ab/nsp2496Q496ECagGag11AY.40.000002
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ORF1ab/nsp2496Q496XCagTag11D.20.000075
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