CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 493

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2493E493KE673KnonsynGagAag233123290.9991422282-2284
ORF1ab/nsp2493E493KE673KnonsynGaGAaA233120.0008580012282-2284
ORF1ab/nsp2493E493EE673EsyngaGgaA2181218112282-2284
ORF1ab/nsp2493E493DE673DnonsyngaGgaT6736700.9955422282-2284
ORF1ab/nsp2493E493DE673DnonsyngaGgaC67330.004457652282-2284
ORF1ab/nsp2493E493GE673GnonsyngAggGg1331320.9924812282-2284
ORF1ab/nsp2493E493GE673GnonsyngAGgGA13310.00751882282-2284
ORF1ab/nsp2493E493delE673deldelGAG---12112112282-2284
ORF1ab/nsp2493E493AE673AnonsyngAggCg626212282-2284
ORF1ab/nsp2493E493XE673XnonsynGagTag13120.9230772282-2284
ORF1ab/nsp2493E493XE673XnonsynGaGTaA1310.07692312282-2284
ORF1ab/nsp2493E493VE673VnonsyngAggTg860.752282-2284
ORF1ab/nsp2493E493VE673VnonsyngAGgTA810.1252282-2284
ORF1ab/nsp2493E493VE673VnonsyngAGgTC810.1252282-2284
ORF1ab/nsp2493E493HE673HnonsynGaGCaC430.752282-2284
ORF1ab/nsp2493E493HE673HnonsynGaGCaT410.252282-2284
ORF1ab/nsp2493E493del1E673del1delGaG-aA310.3333332282-2284
ORF1ab/nsp2493E493del1E673del1delgaGga-310.3333332282-2284
ORF1ab/nsp2493E493del1E673del1delgAgg-g310.3333332282-2284
ORF1ab/nsp2493E493IE673InonsynGAGATT210.52282-2284
ORF1ab/nsp2493E493del2E673del2delGAg--g210.52282-2284
ORF1ab/nsp2493E493IE673InonsynGAGATA210.52282-2284
ORF1ab/nsp2493E493YE673YnonsynGaGTaT210.52282-2284
ORF1ab/nsp2493E493del2E673del2delgAGg--210.52282-2284
ORF1ab/nsp2493E493YE673YnonsynGaGTaC210.52282-2284
ORF1ab/nsp2493E493NE673NnonsynGaGAaT1112282-2284
ORF1ab/nsp2493E493LE673LnonsynGAGTTA1112282-2284
ORF1ab/nsp2493E493QE673QnonsynGagCag1112282-2284
ORF1ab/nsp2493E493SE673SnonsynGAgTCg1112282-2284
ORF1ab/nsp2493E493FE673FnonsynGAGTTT1112282-2284

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2493E493KGagAag23292331All0.000445
ORF1ab/nsp2493E493KGaGAaA22331All0
ORF1ab/nsp2493E493EgaGgaA21812181All0.000417
ORF1ab/nsp2493E493EgaGgaA14671467B.1.1.70.001313
ORF1ab/nsp2493E493KGagAag11061106B.1.2060.902121
ORF1ab/nsp2493E493DgaGgaT670673All0.000128
ORF1ab/nsp2493E493DgaGgaC3673All0.000001
ORF1ab/nsp2493E493EgaGgaA611611AY.740.07066
ORF1ab/nsp2493E493DgaGgaT321322B.1.1.70.000287
ORF1ab/nsp2493E493DgaGgaC1322B.1.1.70.000001
ORF1ab/nsp2493E493KGagAag267267B.1.5460.988889
ORF1ab/nsp2493E493KGagAag195195AY.430.000864
ORF1ab/nsp2493E493KGagAag190190AY.40.000296
ORF1ab/nsp2493E493KGagAag181183B.1.617.20.000682
ORF1ab/nsp2493E493KGaGAaA2183B.1.617.20.000008
ORF1ab/nsp2493E493KGagAag172172B.10.001575
ORF1ab/nsp2493E493GgAggGg132133All0.000025
ORF1ab/nsp2493E493GgAGgGA1133All0
ORF1ab/nsp2493E493DgaGgaT129129AY.30.001283
ORF1ab/nsp2493E493delGAG---121121All0.000023
ORF1ab/nsp2493E493DgaGgaT8383AY.200.003226
ORF1ab/nsp2493E493AgAggCg6262All0.000012
ORF1ab/nsp2493E493GgAggGg4242AY.200.001632
ORF1ab/nsp2493E493delGAG---4040B.1.1.70.000036
ORF1ab/nsp2493E493EgaGgaA3737AY.210.070209
ORF1ab/nsp2493E493AgAggCg2727AY.99.20.002488
ORF1ab/nsp2493E493KGagAag2525B.1.20.00022
ORF1ab/nsp2493E493KGagAag2222B.1.10.000399
ORF1ab/nsp2493E493KGagAag2121AY.390.000519
ORF1ab/nsp2493E493DgaGgaT1919AY.250.000114
ORF1ab/nsp2493E493GgAggGg1818AY.40.000028
ORF1ab/nsp2493E493GgAggGg1818B.1.1.70.000016
ORF1ab/nsp2493E493AgAggCg1717AY.40.000026
ORF1ab/nsp2493E493DgaGgaT1616B.1.617.20.00006
ORF1ab/nsp2493E493KGagAag1515B.1.1.70.000013
ORF1ab/nsp2493E493XGagTag1213All0.000002
ORF1ab/nsp2493E493XGaGTaA113All0
ORF1ab/nsp2493E493KGagAag1313AY.1190.000459
ORF1ab/nsp2493E493DgaGgaT1313AY.40.00002
ORF1ab/nsp2493E493KGagAag1313AY.440.000079
ORF1ab/nsp2493E493KGagAag1111AY.250.000066
ORF1ab/nsp2493E493DgaGgaT1111AY.420.000443
ORF1ab/nsp2493E493delGAG---1111B.10.000101
ORF1ab/nsp2493E493DgaGgaT1111B.1.1.2630.017134
ORF1ab/nsp2493E493EgaGgaA1111B.1.3110.00302
ORF1ab/nsp2493E493DgaGgaT1010AY.440.000061
ORF1ab/nsp2493E493DgaGgaT99AY.5.30.003036
ORF1ab/nsp2493E493KGagAag99B.1.5960.000784
ORF1ab/nsp2493E493EgaGgaA88A.30.016771
ORF1ab/nsp2493E493VgAggTg68All0.000001
ORF1ab/nsp2493E493VgAGgTA18All0
ORF1ab/nsp2493E493VgAGgTC18All0
ORF1ab/nsp2493E493GgAggGg77AY.1020.000186
ORF1ab/nsp2493E493AgAggCg77AY.1030.000043
ORF1ab/nsp2493E493delGAG---77B.1.10.000127
ORF1ab/nsp2493E493GgAggGg67B.1.20.000053
ORF1ab/nsp2493E493GgAGgGA17B.1.20.000009
ORF1ab/nsp2493E493KGagAag77P.10.00011
ORF1ab/nsp2493E493delGAG---660.333333
ORF1ab/nsp2493E493EgaGgaA66AY.1030.000037
ORF1ab/nsp2493E493XGagTag66B.1.1.70.000005
ORF1ab/nsp2493E493delGAG---66B.1.617.20.000023
ORF1ab/nsp2493E493KGagAag55AY.1030.000031
ORF1ab/nsp2493E493DgaGgaT55B.1.1770.000066
ORF1ab/nsp2493E493DgaGgaT55P.10.000079
ORF1ab/nsp2493E493HGaGCaC34All0.000001
ORF1ab/nsp2493E493HGaGCaT14All0
ORF1ab/nsp2493E493DgaGgaT44AY.1030.000025
ORF1ab/nsp2493E493EgaGgaA44AY.1190.000141
ORF1ab/nsp2493E493AgAggCg44AY.250.000024
ORF1ab/nsp2493E493KGagAag44AY.260.000113
ORF1ab/nsp2493E493GgAggGg44AY.30.00004
ORF1ab/nsp2493E493KGagAag44AY.460.000416
ORF1ab/nsp2493E493DgaGgaT44AY.540.000381
ORF1ab/nsp2493E493DgaGgaT44AY.810.007968
ORF1ab/nsp2493E493KGagAag44B.1.1.330.001684
ORF1ab/nsp2493E493KGagAag44B.1.4270.000202
ORF1ab/nsp2493E493del1gAgg-g13All0
ORF1ab/nsp2493E493del1GaG-aA13All0
ORF1ab/nsp2493E493del1gaGga-13All0
ORF1ab/nsp2493E493KGagAag33AY.1130.000427
ORF1ab/nsp2493E493GgAggGg33AY.390.000074
ORF1ab/nsp2493E493delGAG---33AY.430.000013
ORF1ab/nsp2493E493KGagAag33AY.5.40.00083
ORF1ab/nsp2493E493DgaGgaT33B.10.000027
ORF1ab/nsp2493E493EgaGgaA33B.1.10.000054
ORF1ab/nsp2493E493DgaGgaT33B.1.10.000054
ORF1ab/nsp2493E493delGAG---33B.1.1.330.001263
ORF1ab/nsp2493E493KGagAag33B.1.1.5190.000119
ORF1ab/nsp2493E493GgAggGg33B.1.1770.00004
ORF1ab/nsp2493E493GgAggGg33B.1.4090.002344
ORF1ab/nsp2493E493EgaGgaA33B.1.4290.000071
ORF1ab/nsp2493E493delGAG---33B.1.617.10.000387
ORF1ab/nsp2493E493KGagAag33C.370.000348
ORF1ab/nsp2493E493DgaGgaT33C.370.000348
ORF1ab/nsp2493E493HGaGCaC220.111111
ORF1ab/nsp2493E493IGAGATT12All0
ORF1ab/nsp2493E493del2GAg--g12All0
ORF1ab/nsp2493E493del2gAGg--12All0
ORF1ab/nsp2493E493YGaGTaC12All0
ORF1ab/nsp2493E493IGAGATA12All0
ORF1ab/nsp2493E493YGaGTaT12All0
ORF1ab/nsp2493E493KGagAag22AY.1020.000053
ORF1ab/nsp2493E493GgAggGg22AY.1030.000012
ORF1ab/nsp2493E493AgAggCg22AY.1180.000125
ORF1ab/nsp2493E493KGagAag22AY.140.000176
ORF1ab/nsp2493E493KGagAag22AY.240.000862
ORF1ab/nsp2493E493GgAggGg22AY.260.000057
ORF1ab/nsp2493E493delGAG---22AY.350.000466
ORF1ab/nsp2493E493EgaGgaA22AY.40.000003
ORF1ab/nsp2493E493DgaGgaT12AY.430.000004
ORF1ab/nsp2493E493DgaGgaC12AY.430.000004
ORF1ab/nsp2493E493GgAggGg22AY.440.000012
ORF1ab/nsp2493E493EgaGgaA22AY.440.000012
ORF1ab/nsp2493E493KGagAag22AY.530.000575
ORF1ab/nsp2493E493EgaGgaA22AY.670.000929
ORF1ab/nsp2493E493KGagAag22AY.680.000547
ORF1ab/nsp2493E493delGAG---22AY.990.002099
ORF1ab/nsp2493E493EgaGgaA22B.10.000018
ORF1ab/nsp2493E493delGAG---22B.1.1.3480.001592
ORF1ab/nsp2493E493KGagAag22B.1.1.4320.002532
ORF1ab/nsp2493E493HGaGCaC12B.1.1.70.000001
ORF1ab/nsp2493E493HGaGCaT12B.1.1.70.000001
ORF1ab/nsp2493E493VgAGgTC12B.1.1.70.000001
ORF1ab/nsp2493E493VgAggTg12B.1.1.70.000001
ORF1ab/nsp2493E493KGagAag22B.1.177.730.001133
ORF1ab/nsp2493E493EgaGgaA22B.1.2210.000142
ORF1ab/nsp2493E493KGagAag22B.1.3250.013793
ORF1ab/nsp2493E493KGagAag22B.1.3690.00057
ORF1ab/nsp2493E493delGAG---22B.1.3750.001639
ORF1ab/nsp2493E493delGAG---22B.1.4240.016129
ORF1ab/nsp2493E493EgaGgaA22B.1.4270.000101
ORF1ab/nsp2493E493delGAG---22B.1.4290.000047
ORF1ab/nsp2493E493KGagAag22B.1.5640.000852
ORF1ab/nsp2493E493KGagAag22B.1.6060.012048
ORF1ab/nsp2493E493KGagAag22B.1.6120.005305
ORF1ab/nsp2493E493GgAggGg22B.1.617.20.000008
ORF1ab/nsp2493E493IGAGATA12B.1.617.20.000004
ORF1ab/nsp2493E493IGAGATT12B.1.617.20.000004
ORF1ab/nsp2493E493EgaGgaA22C.370.000232
ORF1ab/nsp2493E493delGAG---22N.60.014184
ORF1ab/nsp2493E493KGagAag110.055556
ORF1ab/nsp2493E493delGAG---11A0.000387
ORF1ab/nsp2493E493VgAGgTA11A0.000387
ORF1ab/nsp2493E493delGAG---11A.23.10.000704
ORF1ab/nsp2493E493GgAggGg11AA.10.007246
ORF1ab/nsp2493E493LGAGTTA11All0
ORF1ab/nsp2493E493QGagCag11All0
ORF1ab/nsp2493E493NGaGAaT11All0
ORF1ab/nsp2493E493FGAGTTT11All0
ORF1ab/nsp2493E493SGAgTCg11All0
ORF1ab/nsp2493E493KGagAag11AY.1000.000046
ORF1ab/nsp2493E493KGagAag11AY.1060.000335
ORF1ab/nsp2493E493delGAG---11AY.1080.001103
ORF1ab/nsp2493E493KGagAag11AY.1080.001103
ORF1ab/nsp2493E493GgAggGg11AY.1110.000183
ORF1ab/nsp2493E493delGAG---11AY.1130.000142
ORF1ab/nsp2493E493GgAggGg11AY.1180.000063
ORF1ab/nsp2493E493DgaGgaT11AY.1190.000035
ORF1ab/nsp2493E493EgaGgaA11AY.160.00038
ORF1ab/nsp2493E493delGAG---11AY.230.00007
ORF1ab/nsp2493E493DgaGgaT11AY.230.00007
ORF1ab/nsp2493E493GgAggGg11AY.240.000431
ORF1ab/nsp2493E493EgaGgaA11AY.250.000006
ORF1ab/nsp2493E493GgAggGg11AY.250.000006
ORF1ab/nsp2493E493XGagTag11AY.250.000006
ORF1ab/nsp2493E493delGAG---11AY.250.000006
ORF1ab/nsp2493E493AgAggCg11AY.260.000028
ORF1ab/nsp2493E493delGAG---11AY.260.000028
ORF1ab/nsp2493E493VgAggTg11AY.270.000065
ORF1ab/nsp2493E493GgAggGg11AY.270.000065
ORF1ab/nsp2493E493EgaGgaA11AY.270.000065
ORF1ab/nsp2493E493delGAG---11AY.29.10.000221
ORF1ab/nsp2493E493KGagAag11AY.330.000067
ORF1ab/nsp2493E493GgAggGg11AY.34.10.00051
ORF1ab/nsp2493E493VgAggTg11AY.40.000002
ORF1ab/nsp2493E493delGAG---11AY.40.000002
ORF1ab/nsp2493E493EgaGgaA11AY.430.000004
ORF1ab/nsp2493E493AgAggCg11AY.430.000004
ORF1ab/nsp2493E493GgAggGg11AY.430.000004
ORF1ab/nsp2493E493delGAG---11AY.440.000006
ORF1ab/nsp2493E493EgaGgaA11AY.450.000122
ORF1ab/nsp2493E493DgaGgaC11AY.460.000104
ORF1ab/nsp2493E493delGAG---11AY.460.000104
ORF1ab/nsp2493E493delGAG---11AY.46.60.000072
ORF1ab/nsp2493E493EgaGgaA11AY.50.000021
ORF1ab/nsp2493E493QGagCag11AY.50.000021
ORF1ab/nsp2493E493DgaGgaT11AY.50.000021
ORF1ab/nsp2493E493GgAggGg11AY.540.000095
ORF1ab/nsp2493E493KGagAag11AY.590.00053
ORF1ab/nsp2493E493delGAG---11AY.670.000464
ORF1ab/nsp2493E493EgaGgaA11AY.710.000475
ORF1ab/nsp2493E493GgAggGg11AY.740.000116
ORF1ab/nsp2493E493GgAggGg11AY.750.000056
ORF1ab/nsp2493E493delGAG---11AY.750.000056
ORF1ab/nsp2493E493delGAG---11AY.840.000437
ORF1ab/nsp2493E493KGagAag11AY.870.000833
ORF1ab/nsp2493E493GgAggGg11AY.870.000833
ORF1ab/nsp2493E493DgaGgaT11AY.9.10.000084
ORF1ab/nsp2493E493delGAG---11AY.9.20.000037
ORF1ab/nsp2493E493DgaGgaT11AY.980.000079
ORF1ab/nsp2493E493delGAG---11B0.000128
ORF1ab/nsp2493E493KGagAag11B0.000128
ORF1ab/nsp2493E493del2GAg--g11B.10.000009
ORF1ab/nsp2493E493del1gAgg-g11B.10.000009
ORF1ab/nsp2493E493EgaGgaA11B.1.1.1860.003436
ORF1ab/nsp2493E493AgAggCg11B.1.1.2710.055556
ORF1ab/nsp2493E493delGAG---11B.1.1.3060.000438
ORF1ab/nsp2493E493DgaGgaT11B.1.1.3110.000358
ORF1ab/nsp2493E493KGagAag11B.1.1.4020.011111
ORF1ab/nsp2493E493delGAG---11B.1.1.4160.000905
ORF1ab/nsp2493E493KGagAag11B.1.1.4330.001425
ORF1ab/nsp2493E493KGagAag11B.1.1.5070.008696
ORF1ab/nsp2493E493SGAgTCg11B.1.1.70.000001
ORF1ab/nsp2493E493DgaGgaT11B.1.1420.002899
ORF1ab/nsp2493E493YGaGTaC11B.1.1600.000031
ORF1ab/nsp2493E493KGagAag11B.1.1600.000031
ORF1ab/nsp2493E493EgaGgaA11B.1.1600.000031
ORF1ab/nsp2493E493EgaGgaA11B.1.160.240.004425
ORF1ab/nsp2493E493KGagAag11B.1.1770.000013
ORF1ab/nsp2493E493delGAG---11B.1.1770.000013
ORF1ab/nsp2493E493EgaGgaA11B.1.1770.000013
ORF1ab/nsp2493E493XGagTag11B.1.1770.000013
ORF1ab/nsp2493E493DgaGgaT11B.1.177.210.000076
ORF1ab/nsp2493E493KGagAag11B.1.177.70.000165
ORF1ab/nsp2493E493del1GaG-aA11B.1.177.730.000566
ORF1ab/nsp2493E493KGagAag11B.1.177.770.000726
ORF1ab/nsp2493E493delGAG---11B.1.1790.003759
ORF1ab/nsp2493E493XGagTag11B.1.20.000009
ORF1ab/nsp2493E493DgaGgaT11B.1.20.000009
ORF1ab/nsp2493E493VgAggTg11B.1.20.000009
ORF1ab/nsp2493E493del1gaGga-11B.1.20.000009
ORF1ab/nsp2493E493DgaGgaT11B.1.2210.000071
ORF1ab/nsp2493E493KGagAag11B.1.2400.000216
ORF1ab/nsp2493E493KGagAag11B.1.2850.090909
ORF1ab/nsp2493E493VgAggTg11B.1.3510.00003
ORF1ab/nsp2493E493EgaGgaA11B.1.36.290.000517
ORF1ab/nsp2493E493EgaGgaA11B.1.3670.000792
ORF1ab/nsp2493E493GgAggGg11B.1.3690.000285
ORF1ab/nsp2493E493GgAggGg11B.1.3910.001127
ORF1ab/nsp2493E493KGagAag11B.1.3910.001127
ORF1ab/nsp2493E493del2gAGg--11B.1.416.10.001563
ORF1ab/nsp2493E493XGagTag11B.1.4290.000024
ORF1ab/nsp2493E493VgAggTg11B.1.4290.000024
ORF1ab/nsp2493E493GgAggGg11B.1.438.10.000107
ORF1ab/nsp2493E493XGagTag11B.1.4560.003268
ORF1ab/nsp2493E493KGagAag11B.1.4760.1
ORF1ab/nsp2493E493GgAggGg11B.1.5250.000113
ORF1ab/nsp2493E493DgaGgaT11B.1.5260.000024
ORF1ab/nsp2493E493delGAG---11B.1.5260.000024
ORF1ab/nsp2493E493GgAggGg11B.1.5270.003704
ORF1ab/nsp2493E493DgaGgaT11B.1.5610.000397
ORF1ab/nsp2493E493delGAG---11B.1.5610.000397
ORF1ab/nsp2493E493KGagAag11B.1.5760.000907
ORF1ab/nsp2493E493KGagAag11B.1.5800.004065
ORF1ab/nsp2493E493KGagAag11B.1.5820.000491
ORF1ab/nsp2493E493KGagAag11B.1.5950.000261
ORF1ab/nsp2493E493KGagAag11B.1.6090.000479
ORF1ab/nsp2493E493LGAGTTA11B.1.617.20.000004
ORF1ab/nsp2493E493NGaGAaT11B.1.617.20.000004
ORF1ab/nsp2493E493XGaGTaA11B.1.617.20.000004
ORF1ab/nsp2493E493EgaGgaA11B.1.617.20.000004
ORF1ab/nsp2493E493FGAGTTT11B.1.617.20.000004
ORF1ab/nsp2493E493YGaGTaT11B.1.617.20.000004
ORF1ab/nsp2493E493delGAG---11B.1.6200.000946
ORF1ab/nsp2493E493GgAggGg11B.1.6210.000089
ORF1ab/nsp2493E493AgAggCg11B.1.6210.000089
ORF1ab/nsp2493E493DgaGgaT11B.1.6210.000089
ORF1ab/nsp2493E493EgaGgaA11B.1.6280.000352
ORF1ab/nsp2493E493KGagAag11B.1.6370.000073
ORF1ab/nsp2493E493delGAG---11B.340.013699
ORF1ab/nsp2493E493DgaGgaT11B.400.000364
ORF1ab/nsp2493E493delGAG---11B.570.015152
ORF1ab/nsp2493E493AgAggCg11B.580.010204
ORF1ab/nsp2493E493GgAggGg11B.60.00091
ORF1ab/nsp2493E493XGagTag11D.20.000075
ORF1ab/nsp2493E493EgaGgaA11P.10.000016
ORF1ab/nsp2493E493delGAG---11P.10.000016
ORF1ab/nsp2493E493DgaGgaT11P.1.10.000318
ORF1ab/nsp2493E493GgAggGg11P.1.140.000048
ORF1ab/nsp2493E493delGAG---11P.20.000187
ORF1ab/nsp2493E493EgaGgaA11Q.70.001111
ORF1ab/nsp2493E493DgaGgaT11Q.80.000165