CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 493 | E493K | E673K | nonsyn | Gag | Aag | 2331 | 2329 | 0.999142 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493K | E673K | nonsyn | GaG | AaA | 2331 | 2 | 0.000858001 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493E | E673E | syn | gaG | gaA | 2181 | 2181 | 1 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493D | E673D | nonsyn | gaG | gaT | 673 | 670 | 0.995542 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493D | E673D | nonsyn | gaG | gaC | 673 | 3 | 0.00445765 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493G | E673G | nonsyn | gAg | gGg | 133 | 132 | 0.992481 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493G | E673G | nonsyn | gAG | gGA | 133 | 1 | 0.0075188 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493del | E673del | del | GAG | --- | 121 | 121 | 1 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493A | E673A | nonsyn | gAg | gCg | 62 | 62 | 1 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493X | E673X | nonsyn | Gag | Tag | 13 | 12 | 0.923077 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493X | E673X | nonsyn | GaG | TaA | 13 | 1 | 0.0769231 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493V | E673V | nonsyn | gAg | gTg | 8 | 6 | 0.75 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493V | E673V | nonsyn | gAG | gTA | 8 | 1 | 0.125 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493V | E673V | nonsyn | gAG | gTC | 8 | 1 | 0.125 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493H | E673H | nonsyn | GaG | CaC | 4 | 3 | 0.75 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493H | E673H | nonsyn | GaG | CaT | 4 | 1 | 0.25 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493del1 | E673del1 | del | GaG | -aA | 3 | 1 | 0.333333 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493del1 | E673del1 | del | gaG | ga- | 3 | 1 | 0.333333 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493del1 | E673del1 | del | gAg | g-g | 3 | 1 | 0.333333 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493I | E673I | nonsyn | GAG | ATT | 2 | 1 | 0.5 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493del2 | E673del2 | del | GAg | --g | 2 | 1 | 0.5 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493I | E673I | nonsyn | GAG | ATA | 2 | 1 | 0.5 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493Y | E673Y | nonsyn | GaG | TaT | 2 | 1 | 0.5 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493del2 | E673del2 | del | gAG | g-- | 2 | 1 | 0.5 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493Y | E673Y | nonsyn | GaG | TaC | 2 | 1 | 0.5 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493N | E673N | nonsyn | GaG | AaT | 1 | 1 | 1 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493L | E673L | nonsyn | GAG | TTA | 1 | 1 | 1 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493Q | E673Q | nonsyn | Gag | Cag | 1 | 1 | 1 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493S | E673S | nonsyn | GAg | TCg | 1 | 1 | 1 | 2282-2284 |
ORF1ab/nsp2 | 493 | E493F | E673F | nonsyn | GAG | TTT | 1 | 1 | 1 | 2282-2284 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2329 | 2331 | All | 0.000445 |
ORF1ab/nsp2 | 493 | E493K | GaG | AaA | 2 | 2331 | All | 0 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 2181 | 2181 | All | 0.000417 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1467 | 1467 | B.1.1.7 | 0.001313 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1106 | 1106 | B.1.206 | 0.902121 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 670 | 673 | All | 0.000128 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaC | 3 | 673 | All | 0.000001 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 611 | 611 | AY.74 | 0.07066 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 321 | 322 | B.1.1.7 | 0.000287 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaC | 1 | 322 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 267 | 267 | B.1.546 | 0.988889 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 195 | 195 | AY.43 | 0.000864 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 190 | 190 | AY.4 | 0.000296 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 181 | 183 | B.1.617.2 | 0.000682 |
ORF1ab/nsp2 | 493 | E493K | GaG | AaA | 2 | 183 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 172 | 172 | B.1 | 0.001575 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 132 | 133 | All | 0.000025 |
ORF1ab/nsp2 | 493 | E493G | gAG | gGA | 1 | 133 | All | 0 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 129 | 129 | AY.3 | 0.001283 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 121 | 121 | All | 0.000023 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 83 | 83 | AY.20 | 0.003226 |
ORF1ab/nsp2 | 493 | E493A | gAg | gCg | 62 | 62 | All | 0.000012 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 42 | 42 | AY.20 | 0.001632 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 40 | 40 | B.1.1.7 | 0.000036 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 37 | 37 | AY.21 | 0.070209 |
ORF1ab/nsp2 | 493 | E493A | gAg | gCg | 27 | 27 | AY.99.2 | 0.002488 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 22 | 22 | B.1.1 | 0.000399 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 21 | 21 | AY.39 | 0.000519 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp2 | 493 | E493A | gAg | gCg | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 493 | E493X | Gag | Tag | 12 | 13 | All | 0.000002 |
ORF1ab/nsp2 | 493 | E493X | GaG | TaA | 1 | 13 | All | 0 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 13 | 13 | AY.119 | 0.000459 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 11 | 11 | B.1.1.263 | 0.017134 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 11 | 11 | B.1.311 | 0.00302 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 9 | 9 | AY.5.3 | 0.003036 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 8 | 8 | A.3 | 0.016771 |
ORF1ab/nsp2 | 493 | E493V | gAg | gTg | 6 | 8 | All | 0.000001 |
ORF1ab/nsp2 | 493 | E493V | gAG | gTA | 1 | 8 | All | 0 |
ORF1ab/nsp2 | 493 | E493V | gAG | gTC | 1 | 8 | All | 0 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp2 | 493 | E493A | gAg | gCg | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 6 | 7 | B.1.2 | 0.000053 |
ORF1ab/nsp2 | 493 | E493G | gAG | gGA | 1 | 7 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp2 | 493 | E493X | Gag | Tag | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp2 | 493 | E493H | GaG | CaC | 3 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 493 | E493H | GaG | CaT | 1 | 4 | All | 0 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp2 | 493 | E493A | gAg | gCg | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 4 | 4 | AY.81 | 0.007968 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp2 | 493 | E493del1 | gAg | g-g | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 493 | E493del1 | GaG | -aA | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 493 | E493del1 | gaG | ga- | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 493 | E493H | GaG | CaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 493 | E493I | GAG | ATT | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 493 | E493del2 | GAg | --g | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 493 | E493del2 | gAG | g-- | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 493 | E493Y | GaG | TaC | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 493 | E493I | GAG | ATA | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 493 | E493Y | GaG | TaT | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 493 | E493A | gAg | gCg | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp2 | 493 | E493H | GaG | CaC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 493 | E493H | GaG | CaT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 493 | E493V | gAG | gTC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 493 | E493V | gAg | gTg | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | B.1.325 | 0.013793 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | B.1.606 | 0.012048 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 2 | 2 | B.1.612 | 0.005305 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 493 | E493I | GAG | ATA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 493 | E493I | GAG | ATT | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 493 | E493V | gAG | gTA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp2 | 493 | E493L | GAG | TTA | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 493 | E493Q | Gag | Cag | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 493 | E493N | GaG | AaT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 493 | E493F | GAG | TTT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 493 | E493S | GAg | TCg | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 493 | E493X | Gag | Tag | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 493 | E493A | gAg | gCg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 493 | E493V | gAg | gTg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 493 | E493V | gAg | gTg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 493 | E493A | gAg | gCg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 493 | E493Q | Gag | Cag | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 493 | E493del2 | GAg | --g | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 493 | E493del1 | gAg | g-g | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp2 | 493 | E493A | gAg | gCg | 1 | 1 | B.1.1.271 | 0.055556 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp2 | 493 | E493S | GAg | TCg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp2 | 493 | E493Y | GaG | TaC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | B.1.160.24 | 0.004425 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 493 | E493X | Gag | Tag | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 493 | E493del1 | GaG | -aA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 493 | E493X | Gag | Tag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 493 | E493V | gAg | gTg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 493 | E493del1 | gaG | ga- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.285 | 0.090909 |
ORF1ab/nsp2 | 493 | E493V | gAg | gTg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp2 | 493 | E493del2 | gAG | g-- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp2 | 493 | E493X | Gag | Tag | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 493 | E493V | gAg | gTg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 493 | E493X | Gag | Tag | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.476 | 0.1 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 493 | E493L | GAG | TTA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 493 | E493N | GaG | AaT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 493 | E493X | GaG | TaA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 493 | E493F | GAG | TTT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 493 | E493Y | GaG | TaT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 493 | E493A | gAg | gCg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 493 | E493K | Gag | Aag | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 493 | E493A | gAg | gCg | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 493 | E493X | Gag | Tag | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 493 | E493G | gAg | gGg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 493 | E493del | GAG | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 493 | E493E | gaG | gaA | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp2 | 493 | E493D | gaG | gaT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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