CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 489

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2489K489NK669NnonsynaaGaaT847566330.7826552270-2272
ORF1ab/nsp2489K489NK669NnonsynaaGaaC847518420.2173452270-2272
ORF1ab/nsp2489K489EK669EnonsynAagGag4998499812270-2272
ORF1ab/nsp2489K489KK669KsynaaGaaA2075207512270-2272
ORF1ab/nsp2489K489RK669RnonsynaAgaGg25425412270-2272
ORF1ab/nsp2489K489TK669TnonsynaAgaCg15115112270-2272
ORF1ab/nsp2489K489delK669deldelAAG---11311312270-2272
ORF1ab/nsp2489K489QK669QnonsynAagCag26240.9230772270-2272
ORF1ab/nsp2489K489QK669QnonsynAaGCaA2620.07692312270-2272
ORF1ab/nsp2489K489LK669LnonsynAAgCTg19110.5789472270-2272
ORF1ab/nsp2489K489LK669LnonsynAAgTTg1930.1578952270-2272
ORF1ab/nsp2489K489LK669LnonsynAAGTTA1930.1578952270-2272
ORF1ab/nsp2489K489LK669LnonsynAAGCTC1910.05263162270-2272
ORF1ab/nsp2489K489LK669LnonsynAAGCTA1910.05263162270-2272
ORF1ab/nsp2489K489del1K669del1delaaGaa-1070.72270-2272
ORF1ab/nsp2489K489del1K669del1delAaGCa-1020.22270-2272
ORF1ab/nsp2489K489del1K669del1delAAG-NN1010.12270-2272
ORF1ab/nsp2489K489XK669XnonsynAaGTaA950.5555562270-2272
ORF1ab/nsp2489K489XK669XnonsynAagTag940.4444442270-2272
ORF1ab/nsp2489K489VK669VnonsynAAGGTC6612270-2272
ORF1ab/nsp2489K489MK669MnonsynaAgaTg4412270-2272
ORF1ab/nsp2489K489del2K669del2delaAGa--430.752270-2272
ORF1ab/nsp2489K489YK669YnonsynAaGTaC420.52270-2272
ORF1ab/nsp2489K489YK669YnonsynAaGTaT420.52270-2272
ORF1ab/nsp2489K489del2K669del2delAAGG--410.252270-2272
ORF1ab/nsp2489K489IK669InonsynaAGaTA320.6666672270-2272
ORF1ab/nsp2489K489IK669InonsynaAGaTT310.3333332270-2272
ORF1ab/nsp2489K489FK669FnonsynAAGTTT210.52270-2272
ORF1ab/nsp2489K489HK669HnonsynAaGCaT210.52270-2272
ORF1ab/nsp2489K489FK669FnonsynAAGTTC210.52270-2272
ORF1ab/nsp2489K489HK669HnonsynAaGCaC210.52270-2272
ORF1ab/nsp2489K489GK669GnonsynAAgGGg1112270-2272
ORF1ab/nsp2489K489PK669PnonsynAAgCCg1112270-2272
ORF1ab/nsp2489K489SK669SnonsynaAGaGC1112270-2272

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2489K489NaaGaaT66338475All0.001269
ORF1ab/nsp2489K489NaaGaaC18428475All0.000352
ORF1ab/nsp2489K489EAagGag49984998All0.000956
ORF1ab/nsp2489K489EAagGag45334533B.1.1.70.004058
ORF1ab/nsp2489K489NaaGaaT27492750AY.410.808054
ORF1ab/nsp2489K489NaaGaaC12750AY.410.000294
ORF1ab/nsp2489K489KaaGaaA20752075All0.000397
ORF1ab/nsp2489K489NaaGaaC16381638AY.10.648199
ORF1ab/nsp2489K489KaaGaaA10571057AY.40.001645
ORF1ab/nsp2489K489NaaGaaT9721013B.1.617.20.00366
ORF1ab/nsp2489K489NaaGaaC411013B.1.617.20.000154
ORF1ab/nsp2489K489NaaGaaT583592B.1.1.70.000522
ORF1ab/nsp2489K489NaaGaaC9592B.1.1.70.000008
ORF1ab/nsp2489K489NaaGaaT538538AY.1110.098535
ORF1ab/nsp2489K489NaaGaaT377379AY.430.00167
ORF1ab/nsp2489K489NaaGaaC2379AY.430.000009
ORF1ab/nsp2489K489EAagGag328328AY.90.022171
ORF1ab/nsp2489K489RaAgaGg254254All0.000049
ORF1ab/nsp2489K489KaaGaaA230230A.2.50.11477
ORF1ab/nsp2489K489KaaGaaA210210B.1.1.70.000188
ORF1ab/nsp2489K489NaaGaaT200205AY.250.001203
ORF1ab/nsp2489K489NaaGaaC5205AY.250.00003
ORF1ab/nsp2489K489NaaGaaT171173AY.1020.004534
ORF1ab/nsp2489K489NaaGaaC2173AY.1020.000053
ORF1ab/nsp2489K489TaAgaCg151151All0.000029
ORF1ab/nsp2489K489RaAgaGg129129B.1.1.70.000115
ORF1ab/nsp2489K489NaaGaaT119120AY.440.000724
ORF1ab/nsp2489K489NaaGaaC1120AY.440.000006
ORF1ab/nsp2489K489delAAG---113113All0.000022
ORF1ab/nsp2489K489NaaGaaT98100AY.40.000153
ORF1ab/nsp2489K489NaaGaaC2100AY.40.000003
ORF1ab/nsp2489K489KaaGaaA9393A.2.5.30.958763
ORF1ab/nsp2489K489NaaGaaT9092AY.1030.000559
ORF1ab/nsp2489K489NaaGaaC292AY.1030.000012
ORF1ab/nsp2489K489NaaGaaT6868B.1.1770.000895
ORF1ab/nsp2489K489TaAgaCg6262B.1.2430.004314
ORF1ab/nsp2489K489KaaGaaA6060AY.1100.006761
ORF1ab/nsp2489K489NaaGaaT5656B.1.1.1760.024605
ORF1ab/nsp2489K489NaaGaaT5252B.1.2580.00346
ORF1ab/nsp2489K489KaaGaaA5050B.1.1600.001559
ORF1ab/nsp2489K489NaaGaaC3439AY.1170.002874
ORF1ab/nsp2489K489NaaGaaT539AY.1170.000423
ORF1ab/nsp2489K489KaaGaaA3838AY.430.000168
ORF1ab/nsp2489K489delAAG---3838B.1.1.70.000034
ORF1ab/nsp2489K489KaaGaaA3737AY.250.000223
ORF1ab/nsp2489K489NaaGaaC3737AY.690.006907
ORF1ab/nsp2489K489TaAgaCg3333AY.260.000934
ORF1ab/nsp2489K489NaaGaaT2432AY.390.000593
ORF1ab/nsp2489K489NaaGaaC832AY.390.000198
ORF1ab/nsp2489K489EAagGag3030B.1.617.20.000113
ORF1ab/nsp2489K489QAagCag2426All0.000005
ORF1ab/nsp2489K489QAaGCaA226All0
ORF1ab/nsp2489K489NaaGaaT2425AY.840.010499
ORF1ab/nsp2489K489NaaGaaC125AY.840.000437
ORF1ab/nsp2489K489NaaGaaT2525P.10.000394
ORF1ab/nsp2489K489NaaGaaT2323B.1.20.000203
ORF1ab/nsp2489K489NaaGaaT2021B.10.000183
ORF1ab/nsp2489K489NaaGaaC121B.10.000009
ORF1ab/nsp2489K489KaaGaaA2121B.1.617.20.000079
ORF1ab/nsp2489K489KaaGaaA2020B.1.6190.017422
ORF1ab/nsp2489K489LAAgCTg1119All0.000002
ORF1ab/nsp2489K489LAAgTTg319All0.000001
ORF1ab/nsp2489K489LAAGTTA319All0.000001
ORF1ab/nsp2489K489LAAGCTC119All0
ORF1ab/nsp2489K489LAAGCTA119All0
ORF1ab/nsp2489K489NaaGaaT1418AY.460.001457
ORF1ab/nsp2489K489NaaGaaC418AY.460.000416
ORF1ab/nsp2489K489KaaGaaA1818B.1.20.000158
ORF1ab/nsp2489K489NaaGaaC1016AY.330.000668
ORF1ab/nsp2489K489NaaGaaT616AY.330.000401
ORF1ab/nsp2489K489KaaGaaA1616AY.440.000097
ORF1ab/nsp2489K489EAagGag1616B.1.3690.004564
ORF1ab/nsp2489K489NaaGaaT1616P.1.140.000765
ORF1ab/nsp2489K489KaaGaaA1515AY.470.000467
ORF1ab/nsp2489K489RaAgaGg1515B.1.1600.000468
ORF1ab/nsp2489K489TaAgaCg1414AY.30.000139
ORF1ab/nsp2489K489KaaGaaA1414B.1.4290.000329
ORF1ab/nsp2489K489EAagGag1414Q.10.001769
ORF1ab/nsp2489K489NaaGaaT1313AY.60.000535
ORF1ab/nsp2489K489NaaGaaT1313B.1.1.5190.000516
ORF1ab/nsp2489K489NaaGaaT1313B.1.2410.010552
ORF1ab/nsp2489K489NaaGaaT1212AY.200.000466
ORF1ab/nsp2489K489NaaGaaT1011AY.50.000206
ORF1ab/nsp2489K489NaaGaaC111AY.50.000021
ORF1ab/nsp2489K489NaaGaaT1111Q.10.00139
ORF1ab/nsp2489K489del1aaGaa-710All0.000001
ORF1ab/nsp2489K489del1AaGCa-210All0
ORF1ab/nsp2489K489del1AAG-NN110All0
ORF1ab/nsp2489K489NaaGaaT810AY.920.002298
ORF1ab/nsp2489K489NaaGaaC210AY.920.000575
ORF1ab/nsp2489K489NaaGaaT1010AY.98.10.000484
ORF1ab/nsp2489K489delAAG---1010B.10.000092
ORF1ab/nsp2489K489NaaGaaT1010B.1.258.120.07874
ORF1ab/nsp2489K489XAaGTaA59All0.000001
ORF1ab/nsp2489K489XAagTag49All0.000001
ORF1ab/nsp2489K489NaaGaaT99AY.340.000873
ORF1ab/nsp2489K489EAagGag99AY.40.000014
ORF1ab/nsp2489K489KaaGaaA99AY.420.000362
ORF1ab/nsp2489K489NaaGaaT99AY.830.015517
ORF1ab/nsp2489K489NaaGaaT99AY.880.007958
ORF1ab/nsp2489K489RaAgaGg99B.1.617.20.000034
ORF1ab/nsp2489K489NaaGaaT89D.20.0006
ORF1ab/nsp2489K489NaaGaaC19D.20.000075
ORF1ab/nsp2489K489NaaGaaT99R.10.00081
ORF1ab/nsp2489K489NaaGaaT48AY.1180.000251
ORF1ab/nsp2489K489NaaGaaC48AY.1180.000251
ORF1ab/nsp2489K489RaAgaGg88AY.390.000198
ORF1ab/nsp2489K489RaAgaGg88B.1.4270.000404
ORF1ab/nsp2489K489NaaGaaT88B.1.617.30.023881
ORF1ab/nsp2489K489NaaGaaT77AY.1000.000322
ORF1ab/nsp2489K489NaaGaaT77AY.30.00007
ORF1ab/nsp2489K489KaaGaaA77AY.390.000173
ORF1ab/nsp2489K489RaAgaGg77AY.46.60.000505
ORF1ab/nsp2489K489NaaGaaT77AY.5.40.001937
ORF1ab/nsp2489K489KaaGaaA77AY.980.000553
ORF1ab/nsp2489K489KaaGaaA77B.10.000064
ORF1ab/nsp2489K489RaAgaGg77B.10.000064
ORF1ab/nsp2489K489delAAG---77B.1.10.000127
ORF1ab/nsp2489K489KaaGaaA77B.1.360.001021
ORF1ab/nsp2489K489NaaGaaT77Q.80.001154
ORF1ab/nsp2489K489LAAgCTg660.333333
ORF1ab/nsp2489K489VAAGGTC66All0.000001
ORF1ab/nsp2489K489KaaGaaA66AY.1030.000037
ORF1ab/nsp2489K489NaaGaaT66AY.1190.000212
ORF1ab/nsp2489K489KaaGaaA66AY.1200.000223
ORF1ab/nsp2489K489NaaGaaT56AY.230.000349
ORF1ab/nsp2489K489NaaGaaC16AY.230.00007
ORF1ab/nsp2489K489NaaGaaT66AY.290.000095
ORF1ab/nsp2489K489RaAgaGg66AY.40.000009
ORF1ab/nsp2489K489KaaGaaA66AY.4.20.00013
ORF1ab/nsp2489K489NaaGaaT46AY.450.000487
ORF1ab/nsp2489K489NaaGaaC26AY.450.000243
ORF1ab/nsp2489K489TaAgaCg66AY.7.10.000676
ORF1ab/nsp2489K489KaaGaaA66B.1.10.000109
ORF1ab/nsp2489K489EAagGag66B.1.1.3110.002149
ORF1ab/nsp2489K489NaaGaaT66B.1.360.000875
ORF1ab/nsp2489K489KaaGaaA66P.10.000095
ORF1ab/nsp2489K489EAagGag66Q.80.000989
ORF1ab/nsp2489K489NaaGaaT55A.2.50.002495
ORF1ab/nsp2489K489KaaGaaA55AY.1000.00023
ORF1ab/nsp2489K489KaaGaaA55AY.1020.000133
ORF1ab/nsp2489K489NaaGaaT55AY.380.002496
ORF1ab/nsp2489K489delAAG---55AY.430.000022
ORF1ab/nsp2489K489TaAgaCg55AY.440.00003
ORF1ab/nsp2489K489RaAgaGg55AY.440.00003
ORF1ab/nsp2489K489NaaGaaT55AY.46.10.005133
ORF1ab/nsp2489K489NaaGaaC45AY.620.001743
ORF1ab/nsp2489K489NaaGaaT15AY.620.000436
ORF1ab/nsp2489K489NaaGaaT35AY.750.000168
ORF1ab/nsp2489K489NaaGaaC25AY.750.000112
ORF1ab/nsp2489K489RaAgaGg55AY.940.002213
ORF1ab/nsp2489K489NaaGaaT55B.1.10.000091
ORF1ab/nsp2489K489KaaGaaA55B.1.1.5190.000199
ORF1ab/nsp2489K489VAAGGTC55B.1.1.70.000004
ORF1ab/nsp2489K489EAagGag55B.1.1770.000066
ORF1ab/nsp2489K489NaaGaaT55B.1.3510.000149
ORF1ab/nsp2489K489NaaGaaT35B.1.5260.000071
ORF1ab/nsp2489K489NaaGaaC25B.1.5260.000047
ORF1ab/nsp2489K489delAAG---55B.1.617.20.000019
ORF1ab/nsp2489K489MaAgaTg44All0.000001
ORF1ab/nsp2489K489del2aAGa--34All0.000001
ORF1ab/nsp2489K489YAaGTaT24All0
ORF1ab/nsp2489K489YAaGTaC24All0
ORF1ab/nsp2489K489del2AAGG--14All0
ORF1ab/nsp2489K489KaaGaaA44AY.1060.00134
ORF1ab/nsp2489K489NaaGaaT34AY.1130.000427
ORF1ab/nsp2489K489NaaGaaC14AY.1130.000142
ORF1ab/nsp2489K489NaaGaaT44AY.1160.001147
ORF1ab/nsp2489K489NaaGaaT34AY.120.000948
ORF1ab/nsp2489K489NaaGaaC14AY.120.000316
ORF1ab/nsp2489K489NaaGaaT34AY.1200.000112
ORF1ab/nsp2489K489NaaGaaC14AY.1200.000037
ORF1ab/nsp2489K489NaaGaaT24AY.260.000057
ORF1ab/nsp2489K489NaaGaaC24AY.260.000057
ORF1ab/nsp2489K489KaaGaaA44AY.330.000267
ORF1ab/nsp2489K489NaaGaaT34AY.34.10.00153
ORF1ab/nsp2489K489NaaGaaC14AY.34.10.00051
ORF1ab/nsp2489K489NaaGaaT44AY.360.000593
ORF1ab/nsp2489K489TaAgaCg44AY.390.000099
ORF1ab/nsp2489K489NaaGaaT34AY.5.30.001012
ORF1ab/nsp2489K489NaaGaaC14AY.5.30.000337
ORF1ab/nsp2489K489NaaGaaT34AY.540.000286
ORF1ab/nsp2489K489NaaGaaC14AY.540.000095
ORF1ab/nsp2489K489NaaGaaT34AY.670.001393
ORF1ab/nsp2489K489NaaGaaC14AY.670.000464
ORF1ab/nsp2489K489NaaGaaT44AY.740.000463
ORF1ab/nsp2489K489NaaGaaT44AY.770.00451
ORF1ab/nsp2489K489NaaGaaT44AY.890.019608
ORF1ab/nsp2489K489NaaGaaT44AY.99.20.000369
ORF1ab/nsp2489K489TaAgaCg44B.10.000037
ORF1ab/nsp2489K489EAagGag44B.1.10.000073
ORF1ab/nsp2489K489KaaGaaA44B.1.1.2260.023256
ORF1ab/nsp2489K489LAAgCTg44B.1.1.70.000004
ORF1ab/nsp2489K489QAagCag44B.1.1.70.000004
ORF1ab/nsp2489K489TaAgaCg44B.1.1.70.000004
ORF1ab/nsp2489K489RaAgaGg44B.1.20.000035
ORF1ab/nsp2489K489KaaGaaA44B.1.2430.000278
ORF1ab/nsp2489K489KaaGaaA44B.1.3180.153846
ORF1ab/nsp2489K489NaaGaaT44B.1.5960.000349
ORF1ab/nsp2489K489EAagGag44P.10.000063
ORF1ab/nsp2489K489KaaGaaA44P.1.150.000929
ORF1ab/nsp2489K489IaAGaTA23All0
ORF1ab/nsp2489K489IaAGaTT13All0
ORF1ab/nsp2489K489RaAgaGg33AY.1030.000019
ORF1ab/nsp2489K489LAAGCTC13AY.1130.000142
ORF1ab/nsp2489K489LAAGTTA13AY.1130.000142
ORF1ab/nsp2489K489LAAGCTA13AY.1130.000142
ORF1ab/nsp2489K489NaaGaaT33AY.1210.000406
ORF1ab/nsp2489K489KaaGaaA33AY.140.000264
ORF1ab/nsp2489K489EAagGag33AY.250.000018
ORF1ab/nsp2489K489KaaGaaA33AY.340.000291
ORF1ab/nsp2489K489EAagGag33AY.430.000013
ORF1ab/nsp2489K489QAagCag23AY.430.000009
ORF1ab/nsp2489K489QAaGCaA13AY.430.000004
ORF1ab/nsp2489K489NaaGaaT33AY.610.000314
ORF1ab/nsp2489K489KaaGaaA33AY.99.20.000276
ORF1ab/nsp2489K489EAagGag33B.10.000027
ORF1ab/nsp2489K489RaAgaGg33B.1.10.000054
ORF1ab/nsp2489K489NaaGaaT33B.1.1.2140.000166
ORF1ab/nsp2489K489NaaGaaT33B.1.1.2840.000322
ORF1ab/nsp2489K489NaaGaaT33B.1.1.3110.001074
ORF1ab/nsp2489K489delAAG---33B.1.1.330.001263
ORF1ab/nsp2489K489EAagGag33B.1.1.5150.06
ORF1ab/nsp2489K489del1aaGaa-23B.1.1.70.000002
ORF1ab/nsp2489K489del1AAG-NN13B.1.1.70.000001
ORF1ab/nsp2489K489KaaGaaA33B.1.2580.0002
ORF1ab/nsp2489K489QAagCag33B.1.258.30.005025
ORF1ab/nsp2489K489NaaGaaT33B.1.36.180.001261
ORF1ab/nsp2489K489NaaGaaT33B.1.3670.002377
ORF1ab/nsp2489K489NaaGaaT33B.1.4090.002344
ORF1ab/nsp2489K489KaaGaaA33B.1.4270.000151
ORF1ab/nsp2489K489RaAgaGg33B.1.4290.000071
ORF1ab/nsp2489K489TaAgaCg33B.1.4290.000071
ORF1ab/nsp2489K489KaaGaaA33B.1.466.20.001174
ORF1ab/nsp2489K489NaaGaaT33B.1.5700.008824
ORF1ab/nsp2489K489KaaGaaA33B.1.5960.000261
ORF1ab/nsp2489K489delAAG---33B.1.617.10.000387
ORF1ab/nsp2489K489QAagCag33B.1.617.20.000011
ORF1ab/nsp2489K489NaaGaaT33C.20.048387
ORF1ab/nsp2489K489EAagGag33C.370.000348
ORF1ab/nsp2489K489RaAgaGg33P.10.000047
ORF1ab/nsp2489K489NaaGaaT33P.1.170.000485
ORF1ab/nsp2489K489NaaGaaT33P.1.70.000958
ORF1ab/nsp2489K489delAAG---220.111111
ORF1ab/nsp2489K489KaaGaaA22A.280.005291
ORF1ab/nsp2489K489HAaGCaT12All0
ORF1ab/nsp2489K489FAAGTTC12All0
ORF1ab/nsp2489K489HAaGCaC12All0
ORF1ab/nsp2489K489FAAGTTT12All0
ORF1ab/nsp2489K489IaAGaTA12AY.1020.000027
ORF1ab/nsp2489K489IaAGaTT12AY.1020.000027
ORF1ab/nsp2489K489NaaGaaT22AY.1080.002205
ORF1ab/nsp2489K489KaaGaaA22AY.116.10.000623
ORF1ab/nsp2489K489EAagGag22AY.1180.000125
ORF1ab/nsp2489K489RaAgaGg22AY.120.10.000642
ORF1ab/nsp2489K489KaaGaaA22AY.120.20.002571
ORF1ab/nsp2489K489NaaGaaT22AY.120.20.002571
ORF1ab/nsp2489K489KaaGaaA22AY.130.000322
ORF1ab/nsp2489K489NaaGaaT12AY.130.000161
ORF1ab/nsp2489K489NaaGaaC12AY.130.000161
ORF1ab/nsp2489K489KaaGaaA22AY.270.000129
ORF1ab/nsp2489K489KaaGaaA22AY.30.00002
ORF1ab/nsp2489K489NaaGaaT22AY.3.10.000171
ORF1ab/nsp2489K489RaAgaGg22AY.330.000134
ORF1ab/nsp2489K489delAAG---22AY.350.000466
ORF1ab/nsp2489K489QAagCag22AY.40.000003
ORF1ab/nsp2489K489TaAgaCg22AY.40.000003
ORF1ab/nsp2489K489NaaGaaT22AY.420.00008
ORF1ab/nsp2489K489XAaGTaA12AY.430.000004
ORF1ab/nsp2489K489LAAGTTA12AY.430.000004
ORF1ab/nsp2489K489XAagTag12AY.430.000004
ORF1ab/nsp2489K489LAAgTTg12AY.430.000004
ORF1ab/nsp2489K489QAagCag22AY.440.000012
ORF1ab/nsp2489K489KaaGaaA22AY.460.000208
ORF1ab/nsp2489K489NaaGaaT22AY.46.40.000329
ORF1ab/nsp2489K489NaaGaaC12AY.470.000031
ORF1ab/nsp2489K489NaaGaaT12AY.470.000031
ORF1ab/nsp2489K489EAagGag22AY.590.001059
ORF1ab/nsp2489K489NaaGaaT22AY.590.001059
ORF1ab/nsp2489K489KaaGaaA22AY.610.00021
ORF1ab/nsp2489K489NaaGaaT22AY.650.001066
ORF1ab/nsp2489K489NaaGaaT12AY.730.000665
ORF1ab/nsp2489K489NaaGaaC12AY.730.000665
ORF1ab/nsp2489K489EAagGag22AY.75.10.000361
ORF1ab/nsp2489K489NaaGaaT22AY.9.20.000073
ORF1ab/nsp2489K489delAAG---22AY.990.002099
ORF1ab/nsp2489K489NaaGaaT22AZ.20.001642
ORF1ab/nsp2489K489QAagCag22B.10.000018
ORF1ab/nsp2489K489del1aaGaa-12B.10.000009
ORF1ab/nsp2489K489del1AaGCa-12B.10.000009
ORF1ab/nsp2489K489LAAgCTg12B.1.10.000018
ORF1ab/nsp2489K489LAAgTTg12B.1.10.000018
ORF1ab/nsp2489K489TaAgaCg22B.1.1.2220.000408
ORF1ab/nsp2489K489NaaGaaT22B.1.1.2220.000408
ORF1ab/nsp2489K489RaAgaGg22B.1.1.330.000842
ORF1ab/nsp2489K489delAAG---22B.1.1.3480.001592
ORF1ab/nsp2489K489NaaGaaT22B.1.1.3750.02381
ORF1ab/nsp2489K489NaaGaaT22B.1.1.390.001019
ORF1ab/nsp2489K489XAaGTaA22B.1.1.70.000002
ORF1ab/nsp2489K489del2AAGG--12B.1.1.70.000001
ORF1ab/nsp2489K489del2aAGa--12B.1.1.70.000001
ORF1ab/nsp2489K489KaaGaaA22B.1.1770.000026
ORF1ab/nsp2489K489KaaGaaA22B.1.177.210.000153
ORF1ab/nsp2489K489RaAgaGg22B.1.177.600.000437
ORF1ab/nsp2489K489KaaGaaA22B.1.177.810.000379
ORF1ab/nsp2489K489MaAgaTg22B.1.177.860.000367
ORF1ab/nsp2489K489del2aAGa--22B.1.20.000018
ORF1ab/nsp2489K489KaaGaaA22B.1.2100.004264
ORF1ab/nsp2489K489KaaGaaA22B.1.2210.000142
ORF1ab/nsp2489K489NaaGaaT22B.1.2400.000431
ORF1ab/nsp2489K489RaAgaGg22B.1.3510.000059
ORF1ab/nsp2489K489KaaGaaA22B.1.3510.000059
ORF1ab/nsp2489K489EAagGag22B.1.360.000292
ORF1ab/nsp2489K489RaAgaGg22B.1.36.270.001527
ORF1ab/nsp2489K489NaaGaaT22B.1.3690.00057
ORF1ab/nsp2489K489delAAG---22B.1.3750.001639
ORF1ab/nsp2489K489delAAG---22B.1.4240.016129
ORF1ab/nsp2489K489delAAG---22B.1.4290.000047
ORF1ab/nsp2489K489NaaGaaT22B.1.5650.001621
ORF1ab/nsp2489K489NaaGaaT22B.1.5750.000607
ORF1ab/nsp2489K489TaAgaCg22B.1.617.20.000008
ORF1ab/nsp2489K489NaaGaaT22B.1.6210.000177
ORF1ab/nsp2489K489NaaGaaT22B.1.6370.000146
ORF1ab/nsp2489K489KaaGaaA22C.370.000232
ORF1ab/nsp2489K489NaaGaaT22C.370.000232
ORF1ab/nsp2489K489delAAG---22N.60.014184
ORF1ab/nsp2489K489NaaGaaT22P.20.000373
ORF1ab/nsp2489K489KaaGaaA22R.10.00018
ORF1ab/nsp2489K489NaaGaaT110.055556
ORF1ab/nsp2489K489delAAG---11A0.000387
ORF1ab/nsp2489K489RaAgaGg11A.10.000282
ORF1ab/nsp2489K489EAagGag11A.20.000662
ORF1ab/nsp2489K489delAAG---11A.23.10.000704
ORF1ab/nsp2489K489KaaGaaA11A.50.001923
ORF1ab/nsp2489K489KaaGaaA11AD.20.000219
ORF1ab/nsp2489K489NaaGaaT11AD.20.000219
ORF1ab/nsp2489K489RaAgaGg11AD.20.000219
ORF1ab/nsp2489K489GAAgGGg11All0
ORF1ab/nsp2489K489SaAGaGC11All0
ORF1ab/nsp2489K489PAAgCCg11All0
ORF1ab/nsp2489K489RaAgaGg11AY.1000.000046
ORF1ab/nsp2489K489TaAgaCg11AY.1020.000027
ORF1ab/nsp2489K489FAAGTTT11AY.1020.000027
ORF1ab/nsp2489K489LAAGTTA11AY.1020.000027
ORF1ab/nsp2489K489YAaGTaT11AY.1020.000027
ORF1ab/nsp2489K489XAaGTaA11AY.1020.000027
ORF1ab/nsp2489K489RaAgaGg11AY.1020.000027
ORF1ab/nsp2489K489MaAgaTg11AY.1020.000027
ORF1ab/nsp2489K489EAagGag11AY.1030.000006
ORF1ab/nsp2489K489TaAgaCg11AY.1030.000006
ORF1ab/nsp2489K489RaAgaGg11AY.1050.000643
ORF1ab/nsp2489K489NaaGaaC11AY.1050.000643
ORF1ab/nsp2489K489delAAG---11AY.1080.001103
ORF1ab/nsp2489K489TaAgaCg11AY.1100.000113
ORF1ab/nsp2489K489TaAgaCg11AY.1130.000142
ORF1ab/nsp2489K489FAAGTTC11AY.1130.000142
ORF1ab/nsp2489K489YAaGTaC11AY.1130.000142
ORF1ab/nsp2489K489HAaGCaC11AY.1130.000142
ORF1ab/nsp2489K489QAaGCaA11AY.1130.000142
ORF1ab/nsp2489K489XAaGTaA11AY.1130.000142
ORF1ab/nsp2489K489RaAgaGg11AY.1140.000231
ORF1ab/nsp2489K489KaaGaaA11AY.1190.000035
ORF1ab/nsp2489K489del1aaGaa-11AY.1190.000035
ORF1ab/nsp2489K489RaAgaGg11AY.1200.000037
ORF1ab/nsp2489K489SaAGaGC11AY.120.10.000321
ORF1ab/nsp2489K489TaAgaCg11AY.1210.000135
ORF1ab/nsp2489K489NaaGaaC11AY.160.00038
ORF1ab/nsp2489K489NaaGaaT11AY.16.10.00047
ORF1ab/nsp2489K489TaAgaCg11AY.16.10.00047
ORF1ab/nsp2489K489NaaGaaC11AY.190.00114
ORF1ab/nsp2489K489NaaGaaC11AY.220.002092
ORF1ab/nsp2489K489delAAG---11AY.230.00007
ORF1ab/nsp2489K489NaaGaaT11AY.240.000431
ORF1ab/nsp2489K489delAAG---11AY.250.000006
ORF1ab/nsp2489K489KaaGaaA11AY.260.000028
ORF1ab/nsp2489K489RaAgaGg11AY.290.000016
ORF1ab/nsp2489K489delAAG---11AY.29.10.000221
ORF1ab/nsp2489K489delAAG---11AY.30.00001
ORF1ab/nsp2489K489EAagGag11AY.30.00001
ORF1ab/nsp2489K489RaAgaGg11AY.30.00001
ORF1ab/nsp2489K489KaaGaaA11AY.3.10.000085
ORF1ab/nsp2489K489XAagTag11AY.320.000532
ORF1ab/nsp2489K489QAagCag11AY.330.000067
ORF1ab/nsp2489K489RaAgaGg11AY.350.000233
ORF1ab/nsp2489K489RaAgaGg11AY.380.000499
ORF1ab/nsp2489K489delAAG---11AY.40.000002
ORF1ab/nsp2489K489NaaGaaT11AY.4.20.000022
ORF1ab/nsp2489K489NaaGaaC11AY.4.50.000107
ORF1ab/nsp2489K489MaAgaTg11AY.430.000004
ORF1ab/nsp2489K489HAaGCaT11AY.430.000004
ORF1ab/nsp2489K489IaAGaTA11AY.430.000004
ORF1ab/nsp2489K489del1aaGaa-11AY.440.000006
ORF1ab/nsp2489K489LAAgTTg11AY.440.000006
ORF1ab/nsp2489K489GAAgGGg11AY.440.000006
ORF1ab/nsp2489K489EAagGag11AY.440.000006
ORF1ab/nsp2489K489delAAG---11AY.440.000006
ORF1ab/nsp2489K489EAagGag11AY.450.000122
ORF1ab/nsp2489K489delAAG---11AY.460.000104
ORF1ab/nsp2489K489NaaGaaT11AY.46.20.000635
ORF1ab/nsp2489K489delAAG---11AY.46.60.000072
ORF1ab/nsp2489K489RaAgaGg11AY.470.000031
ORF1ab/nsp2489K489EAagGag11AY.480.000465
ORF1ab/nsp2489K489KaaGaaA11AY.50.000021
ORF1ab/nsp2489K489KaaGaaA11AY.5.40.000277
ORF1ab/nsp2489K489NaaGaaC11AY.510.000909
ORF1ab/nsp2489K489KaaGaaA11AY.530.000288
ORF1ab/nsp2489K489TaAgaCg11AY.540.000095
ORF1ab/nsp2489K489KaaGaaA11AY.540.000095
ORF1ab/nsp2489K489NaaGaaC11AY.560.001605
ORF1ab/nsp2489K489RaAgaGg11AY.60.000041
ORF1ab/nsp2489K489EAagGag11AY.60.000041
ORF1ab/nsp2489K489NaaGaaT11AY.600.000938
ORF1ab/nsp2489K489EAagGag11AY.610.000105
ORF1ab/nsp2489K489EAagGag11AY.650.000533
ORF1ab/nsp2489K489YAaGTaC11AY.670.000464
ORF1ab/nsp2489K489KaaGaaA11AY.670.000464
ORF1ab/nsp2489K489NaaGaaT11AY.680.000274
ORF1ab/nsp2489K489KaaGaaA11AY.70.000196
ORF1ab/nsp2489K489KaaGaaA11AY.700.000209
ORF1ab/nsp2489K489NaaGaaT11AY.700.000209
ORF1ab/nsp2489K489RaAgaGg11AY.730.000665
ORF1ab/nsp2489K489KaaGaaA11AY.740.000116
ORF1ab/nsp2489K489QAagCag11AY.750.000056
ORF1ab/nsp2489K489NaaGaaT11AY.75.10.00018
ORF1ab/nsp2489K489NaaGaaC11AY.780.001541
ORF1ab/nsp2489K489NaaGaaC11AY.820.001357
ORF1ab/nsp2489K489del1AaGCa-11AY.840.000437
ORF1ab/nsp2489K489KaaGaaA11AY.840.000437
ORF1ab/nsp2489K489NaaGaaC11AY.850.000427
ORF1ab/nsp2489K489NaaGaaC11AY.870.000833
ORF1ab/nsp2489K489delAAG---11AY.9.20.000037
ORF1ab/nsp2489K489EAagGag11AY.9.20.000037
ORF1ab/nsp2489K489TaAgaCg11AY.900.000684
ORF1ab/nsp2489K489NaaGaaT11AY.950.000761
ORF1ab/nsp2489K489RaAgaGg11AY.980.000079
ORF1ab/nsp2489K489NaaGaaC11AY.980.000079
ORF1ab/nsp2489K489delAAG---11B0.000128
ORF1ab/nsp2489K489KaaGaaA11B0.000128
ORF1ab/nsp2489K489NaaGaaT11B0.000128
ORF1ab/nsp2489K489KaaGaaA11B.1.1.10.000327
ORF1ab/nsp2489K489RaAgaGg11B.1.1.1890.001513
ORF1ab/nsp2489K489KaaGaaA11B.1.1.2220.000204
ORF1ab/nsp2489K489NaaGaaT11B.1.1.2550.00303
ORF1ab/nsp2489K489EAagGag11B.1.1.2740.005051
ORF1ab/nsp2489K489NaaGaaT11B.1.1.3040.002809
ORF1ab/nsp2489K489EAagGag11B.1.1.3060.000438
ORF1ab/nsp2489K489delAAG---11B.1.1.3060.000438
ORF1ab/nsp2489K489NaaGaaT11B.1.1.3520.03125
ORF1ab/nsp2489K489KaaGaaA11B.1.1.3540.004386
ORF1ab/nsp2489K489KaaGaaA11B.1.1.3850.004464
ORF1ab/nsp2489K489delAAG---11B.1.1.4160.000905
ORF1ab/nsp2489K489RaAgaGg11B.1.1.4480.002033
ORF1ab/nsp2489K489RaAgaGg11B.1.1.950.019608
ORF1ab/nsp2489K489NaaGaaT11B.1.110.30.000718
ORF1ab/nsp2489K489TaAgaCg11B.1.1110.001175
ORF1ab/nsp2489K489QAagCag11B.1.1570.002985
ORF1ab/nsp2489K489XAagTag11B.1.1600.000031
ORF1ab/nsp2489K489NaaGaaT11B.1.1600.000031
ORF1ab/nsp2489K489EAagGag11B.1.1600.000031
ORF1ab/nsp2489K489TaAgaCg11B.1.1770.000013
ORF1ab/nsp2489K489delAAG---11B.1.1770.000013
ORF1ab/nsp2489K489KaaGaaA11B.1.177.180.00116
ORF1ab/nsp2489K489NaaGaaT11B.1.177.330.001645
ORF1ab/nsp2489K489NaaGaaT11B.1.177.570.000281
ORF1ab/nsp2489K489KaaGaaA11B.1.177.580.001332
ORF1ab/nsp2489K489KaaGaaA11B.1.177.730.000566
ORF1ab/nsp2489K489RaAgaGg11B.1.177.810.000189
ORF1ab/nsp2489K489NaaGaaT11B.1.177.810.000189
ORF1ab/nsp2489K489delAAG---11B.1.1790.003759
ORF1ab/nsp2489K489delAAG---11B.1.20.000009
ORF1ab/nsp2489K489QAagCag11B.1.20.000009
ORF1ab/nsp2489K489del1aaGaa-11B.1.20.000009
ORF1ab/nsp2489K489NaaGaaC11B.1.2210.000071
ORF1ab/nsp2489K489NaaGaaT11B.1.2320.000537
ORF1ab/nsp2489K489NaaGaaT11B.1.2340.000132
ORF1ab/nsp2489K489delAAG---11B.1.2430.00007
ORF1ab/nsp2489K489KaaGaaA11B.1.2790.000514
ORF1ab/nsp2489K489KaaGaaA11B.1.2930.0125
ORF1ab/nsp2489K489KaaGaaA11B.1.3110.000275
ORF1ab/nsp2489K489RaAgaGg11B.1.360.000146
ORF1ab/nsp2489K489QAagCag11B.1.360.000146
ORF1ab/nsp2489K489KaaGaaA11B.1.36.10.00114
ORF1ab/nsp2489K489KaaGaaA11B.1.36.180.00042
ORF1ab/nsp2489K489NaaGaaT11B.1.36.290.000517
ORF1ab/nsp2489K489del1aaGaa-11B.1.36.290.000517
ORF1ab/nsp2489K489RaAgaGg11B.1.3750.00082
ORF1ab/nsp2489K489VAAGGTC11B.1.3750.00082
ORF1ab/nsp2489K489RaAgaGg11B.1.3960.000706
ORF1ab/nsp2489K489EAagGag11B.1.4270.00005
ORF1ab/nsp2489K489NaaGaaT11B.1.4280.00102
ORF1ab/nsp2489K489XAagTag11B.1.4560.003268
ORF1ab/nsp2489K489NaaGaaT11B.1.4970.000315
ORF1ab/nsp2489K489RaAgaGg11B.1.5080.025641
ORF1ab/nsp2489K489NaaGaaT11B.1.5230.002451
ORF1ab/nsp2489K489RaAgaGg11B.1.5250.000113
ORF1ab/nsp2489K489delAAG---11B.1.5260.000024
ORF1ab/nsp2489K489KaaGaaA11B.1.5260.000024
ORF1ab/nsp2489K489KaaGaaA11B.1.5380.008065
ORF1ab/nsp2489K489delAAG---11B.1.5610.000397
ORF1ab/nsp2489K489KaaGaaA11B.1.5760.000907
ORF1ab/nsp2489K489NaaGaaT11B.1.6090.000479
ORF1ab/nsp2489K489KaaGaaA11B.1.617.10.000129
ORF1ab/nsp2489K489YAaGTaT11B.1.617.20.000004
ORF1ab/nsp2489K489PAAgCCg11B.1.617.20.000004
ORF1ab/nsp2489K489EAagGag11B.1.617.30.002985
ORF1ab/nsp2489K489delAAG---11B.1.6200.000946
ORF1ab/nsp2489K489KaaGaaA11B.1.6200.000946
ORF1ab/nsp2489K489NaaGaaT11B.1.6250.002353
ORF1ab/nsp2489K489KaaGaaA11B.1.6280.000352
ORF1ab/nsp2489K489KaaGaaA11B.1.6310.003367
ORF1ab/nsp2489K489EAagGag11B.400.000364
ORF1ab/nsp2489K489delAAG---11B.570.015152
ORF1ab/nsp2489K489KaaGaaA11C.260.007353
ORF1ab/nsp2489K489NaaGaaT11C.360.000911
ORF1ab/nsp2489K489NaaGaaT11C.60.037037
ORF1ab/nsp2489K489RaAgaGg11D.20.000075
ORF1ab/nsp2489K489KaaGaaA11D.20.000075
ORF1ab/nsp2489K489delAAG---11P.10.000016
ORF1ab/nsp2489K489EAagGag11P.1.70.000319
ORF1ab/nsp2489K489RaAgaGg11P.1.70.000319
ORF1ab/nsp2489K489delAAG---11P.20.000187
ORF1ab/nsp2489K489EAagGag11P.20.000187
ORF1ab/nsp2489K489QAagCag11Q.10.000126
ORF1ab/nsp2489K489EAagGag11Q.30.000145
ORF1ab/nsp2489K489RaAgaGg11Q.40.000455
ORF1ab/nsp2489K489EAagGag11Q.40.000455
ORF1ab/nsp2489K489KaaGaaA11Q.80.000165
ORF1ab/nsp2489K489delAAG---11U.30.003861