CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 489

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2489K489NK669NnonsynaaGaaT847566330.7826552270-2272
ORF1ab/nsp2489K489NK669NnonsynaaGaaC847518420.2173452270-2272
ORF1ab/nsp2489K489EK669EnonsynAagGag4998499812270-2272
ORF1ab/nsp2489K489KK669KsynaaGaaA2075207512270-2272
ORF1ab/nsp2489K489RK669RnonsynaAgaGg25425412270-2272
ORF1ab/nsp2489K489TK669TnonsynaAgaCg15115112270-2272
ORF1ab/nsp2489K489delK669deldelAAG---11311312270-2272
ORF1ab/nsp2489K489QK669QnonsynAagCag26240.9230772270-2272
ORF1ab/nsp2489K489QK669QnonsynAaGCaA2620.07692312270-2272
ORF1ab/nsp2489K489LK669LnonsynAAgCTg19110.5789472270-2272
ORF1ab/nsp2489K489LK669LnonsynAAgTTg1930.1578952270-2272
ORF1ab/nsp2489K489LK669LnonsynAAGTTA1930.1578952270-2272
ORF1ab/nsp2489K489LK669LnonsynAAGCTC1910.05263162270-2272
ORF1ab/nsp2489K489LK669LnonsynAAGCTA1910.05263162270-2272
ORF1ab/nsp2489K489del1K669del1delaaGaa-1070.72270-2272
ORF1ab/nsp2489K489del1K669del1delAaGCa-1020.22270-2272
ORF1ab/nsp2489K489del1K669del1delAAG-NN1010.12270-2272
ORF1ab/nsp2489K489XK669XnonsynAaGTaA950.5555562270-2272
ORF1ab/nsp2489K489XK669XnonsynAagTag940.4444442270-2272
ORF1ab/nsp2489K489VK669VnonsynAAGGTC6612270-2272
ORF1ab/nsp2489K489MK669MnonsynaAgaTg4412270-2272
ORF1ab/nsp2489K489del2K669del2delaAGa--430.752270-2272
ORF1ab/nsp2489K489YK669YnonsynAaGTaC420.52270-2272
ORF1ab/nsp2489K489YK669YnonsynAaGTaT420.52270-2272
ORF1ab/nsp2489K489del2K669del2delAAGG--410.252270-2272
ORF1ab/nsp2489K489IK669InonsynaAGaTA320.6666672270-2272
ORF1ab/nsp2489K489IK669InonsynaAGaTT310.3333332270-2272
ORF1ab/nsp2489K489FK669FnonsynAAGTTT210.52270-2272
ORF1ab/nsp2489K489HK669HnonsynAaGCaT210.52270-2272
ORF1ab/nsp2489K489FK669FnonsynAAGTTC210.52270-2272
ORF1ab/nsp2489K489HK669HnonsynAaGCaC210.52270-2272
ORF1ab/nsp2489K489GK669GnonsynAAgGGg1112270-2272
ORF1ab/nsp2489K489PK669PnonsynAAgCCg1112270-2272
ORF1ab/nsp2489K489SK669SnonsynaAGaGC1112270-2272

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2489K489NaaGaaT66338475All0.001269
ORF1ab/nsp2489K489NaaGaaC18428475All0.000352
ORF1ab/nsp2489K489EAagGag49984998All0.000956
ORF1ab/nsp2489K489EAagGag45334533B.1.1.70.004058
ORF1ab/nsp2489K489NaaGaaT27492750AY.410.808054
ORF1ab/nsp2489K489NaaGaaC12750AY.410.000294
ORF1ab/nsp2489K489KaaGaaA20752075All0.000397
ORF1ab/nsp2489K489NaaGaaC16381638AY.10.648199
ORF1ab/nsp2489K489KaaGaaA10571057AY.40.001645
ORF1ab/nsp2489K489NaaGaaT9721013B.1.617.20.00366
ORF1ab/nsp2489K489NaaGaaC411013B.1.617.20.000154
ORF1ab/nsp2489K489NaaGaaT583592B.1.1.70.000522
ORF1ab/nsp2489K489NaaGaaC9592B.1.1.70.000008
ORF1ab/nsp2489K489NaaGaaT538538AY.1110.098535
ORF1ab/nsp2489K489NaaGaaT377379AY.430.00167
ORF1ab/nsp2489K489NaaGaaC2379AY.430.000009
ORF1ab/nsp2489K489EAagGag328328AY.90.022171
ORF1ab/nsp2489K489RaAgaGg254254All0.000049
ORF1ab/nsp2489K489KaaGaaA230230A.2.50.11477
ORF1ab/nsp2489K489KaaGaaA210210B.1.1.70.000188
ORF1ab/nsp2489K489NaaGaaT200205AY.250.001203
ORF1ab/nsp2489K489NaaGaaC5205AY.250.00003
ORF1ab/nsp2489K489NaaGaaT171173AY.1020.004534
ORF1ab/nsp2489K489NaaGaaC2173AY.1020.000053
ORF1ab/nsp2489K489TaAgaCg151151All0.000029
ORF1ab/nsp2489K489RaAgaGg129129B.1.1.70.000115
ORF1ab/nsp2489K489NaaGaaT119120AY.440.000724
ORF1ab/nsp2489K489NaaGaaC1120AY.440.000006
ORF1ab/nsp2489K489delAAG---113113All0.000022
ORF1ab/nsp2489K489NaaGaaT98100AY.40.000153
ORF1ab/nsp2489K489NaaGaaC2100AY.40.000003
ORF1ab/nsp2489K489KaaGaaA9393A.2.5.30.958763
ORF1ab/nsp2489K489NaaGaaT9092AY.1030.000559
ORF1ab/nsp2489K489NaaGaaC292AY.1030.000012
ORF1ab/nsp2489K489NaaGaaT6868B.1.1770.000895
ORF1ab/nsp2489K489TaAgaCg6262B.1.2430.004314
ORF1ab/nsp2489K489KaaGaaA6060AY.1100.006761
ORF1ab/nsp2489K489NaaGaaT5656B.1.1.1760.024605
ORF1ab/nsp2489K489NaaGaaT5252B.1.2580.00346
ORF1ab/nsp2489K489KaaGaaA5050B.1.1600.001559
ORF1ab/nsp2489K489NaaGaaC3439AY.1170.002874
ORF1ab/nsp2489K489NaaGaaT539AY.1170.000423
ORF1ab/nsp2489K489KaaGaaA3838AY.430.000168
ORF1ab/nsp2489K489delAAG---3838B.1.1.70.000034
ORF1ab/nsp2489K489KaaGaaA3737AY.250.000223
ORF1ab/nsp2489K489NaaGaaC3737AY.690.006907
ORF1ab/nsp2489K489TaAgaCg3333AY.260.000934
ORF1ab/nsp2489K489NaaGaaT2432AY.390.000593
ORF1ab/nsp2489K489NaaGaaC832AY.390.000198
ORF1ab/nsp2489K489EAagGag3030B.1.617.20.000113
ORF1ab/nsp2489K489QAagCag2426All0.000005
ORF1ab/nsp2489K489QAaGCaA226All0
ORF1ab/nsp2489K489NaaGaaT2425AY.840.010499
ORF1ab/nsp2489K489NaaGaaC125AY.840.000437
ORF1ab/nsp2489K489NaaGaaT2525P.10.000394
ORF1ab/nsp2489K489NaaGaaT2323B.1.20.000203
ORF1ab/nsp2489K489NaaGaaT2021B.10.000183
ORF1ab/nsp2489K489NaaGaaC121B.10.000009
ORF1ab/nsp2489K489KaaGaaA2121B.1.617.20.000079
ORF1ab/nsp2489K489KaaGaaA2020B.1.6190.017422
ORF1ab/nsp2489K489LAAgCTg1119All0.000002
ORF1ab/nsp2489K489LAAgTTg319All0.000001
ORF1ab/nsp2489K489LAAGTTA319All0.000001
ORF1ab/nsp2489K489LAAGCTC119All0
ORF1ab/nsp2489K489LAAGCTA119All0
ORF1ab/nsp2489K489NaaGaaT1418AY.460.001457
ORF1ab/nsp2489K489NaaGaaC418AY.460.000416
ORF1ab/nsp2489K489KaaGaaA1818B.1.20.000158
ORF1ab/nsp2489K489NaaGaaC1016AY.330.000668
ORF1ab/nsp2489K489NaaGaaT616AY.330.000401
ORF1ab/nsp2489K489KaaGaaA1616AY.440.000097
ORF1ab/nsp2489K489EAagGag1616B.1.3690.004564
ORF1ab/nsp2489K489NaaGaaT1616P.1.140.000765
ORF1ab/nsp2489K489KaaGaaA1515AY.470.000467
ORF1ab/nsp2489K489RaAgaGg1515B.1.1600.000468
ORF1ab/nsp2489K489TaAgaCg1414AY.30.000139
ORF1ab/nsp2489K489KaaGaaA1414B.1.4290.000329
ORF1ab/nsp2489K489EAagGag1414Q.10.001769
ORF1ab/nsp2489K489NaaGaaT1313AY.60.000535
ORF1ab/nsp2489K489NaaGaaT1313B.1.1.5190.000516
ORF1ab/nsp2489K489NaaGaaT1313B.1.2410.010552
ORF1ab/nsp2489K489NaaGaaT1212AY.200.000466
ORF1ab/nsp2489K489NaaGaaT1011AY.50.000206
ORF1ab/nsp2489K489NaaGaaC111AY.50.000021
ORF1ab/nsp2489K489NaaGaaT1111Q.10.00139
ORF1ab/nsp2489K489del1aaGaa-710All0.000001
ORF1ab/nsp2489K489del1AaGCa-210All0
ORF1ab/nsp2489K489del1AAG-NN110All0
ORF1ab/nsp2489K489NaaGaaT810AY.920.002298
ORF1ab/nsp2489K489NaaGaaC210AY.920.000575
ORF1ab/nsp2489K489NaaGaaT1010AY.98.10.000484
ORF1ab/nsp2489K489delAAG---1010B.10.000092
ORF1ab/nsp2489K489NaaGaaT1010B.1.258.120.07874
ORF1ab/nsp2489K489XAaGTaA59All0.000001
ORF1ab/nsp2489K489XAagTag49All0.000001
ORF1ab/nsp2489K489NaaGaaT99AY.340.000873
ORF1ab/nsp2489K489EAagGag99AY.40.000014
ORF1ab/nsp2489K489KaaGaaA99AY.420.000362
ORF1ab/nsp2489K489NaaGaaT99AY.830.015517
ORF1ab/nsp2489K489NaaGaaT99AY.880.007958
ORF1ab/nsp2489K489RaAgaGg99B.1.617.20.000034
ORF1ab/nsp2489K489NaaGaaT89D.20.0006
ORF1ab/nsp2489K489NaaGaaC19D.20.000075
ORF1ab/nsp2489K489NaaGaaT99R.10.00081
ORF1ab/nsp2489K489NaaGaaT48AY.1180.000251
ORF1ab/nsp2489K489NaaGaaC48AY.1180.000251
ORF1ab/nsp2489K489RaAgaGg88AY.390.000198
ORF1ab/nsp2489K489RaAgaGg88B.1.4270.000404
ORF1ab/nsp2489K489NaaGaaT88B.1.617.30.023881
ORF1ab/nsp2489K489NaaGaaT77AY.1000.000322
ORF1ab/nsp2489K489NaaGaaT77AY.30.00007
ORF1ab/nsp2489K489KaaGaaA77AY.390.000173
ORF1ab/nsp2489K489RaAgaGg77AY.46.60.000505
ORF1ab/nsp2489K489NaaGaaT77AY.5.40.001937
ORF1ab/nsp2489K489KaaGaaA77AY.980.000553
ORF1ab/nsp2489K489KaaGaaA77B.10.000064
ORF1ab/nsp2489K489RaAgaGg77B.10.000064
ORF1ab/nsp2489K489delAAG---77B.1.10.000127
ORF1ab/nsp2489K489KaaGaaA77B.1.360.001021
ORF1ab/nsp2489K489NaaGaaT77Q.80.001154
ORF1ab/nsp2489K489LAAgCTg660.333333
ORF1ab/nsp2489K489VAAGGTC66All0.000001
ORF1ab/nsp2489K489KaaGaaA66AY.1030.000037
ORF1ab/nsp2489K489NaaGaaT66AY.1190.000212
ORF1ab/nsp2489K489KaaGaaA66AY.1200.000223
ORF1ab/nsp2489K489NaaGaaT56AY.230.000349
ORF1ab/nsp2489K489NaaGaaC16AY.230.00007
ORF1ab/nsp2489K489NaaGaaT66AY.290.000095
ORF1ab/nsp2489K489RaAgaGg66AY.40.000009
ORF1ab/nsp2489K489KaaGaaA66AY.4.20.00013
ORF1ab/nsp2489K489NaaGaaT46AY.450.000487
ORF1ab/nsp2489K489NaaGaaC26AY.450.000243
ORF1ab/nsp2489K489TaAgaCg66AY.7.10.000676
ORF1ab/nsp2489K489KaaGaaA66B.1.10.000109
ORF1ab/nsp2489K489EAagGag66B.1.1.3110.002149
ORF1ab/nsp2489K489NaaGaaT66B.1.360.000875
ORF1ab/nsp2489K489KaaGaaA66P.10.000095
ORF1ab/nsp2489K489EAagGag66Q.80.000989
ORF1ab/nsp2489K489NaaGaaT55A.2.50.002495
ORF1ab/nsp2489K489KaaGaaA55AY.1000.00023
ORF1ab/nsp2489K489KaaGaaA55AY.1020.000133
ORF1ab/nsp2489K489NaaGaaT55AY.380.002496
ORF1ab/nsp2489K489delAAG---55AY.430.000022
ORF1ab/nsp2489K489TaAgaCg55AY.440.00003
ORF1ab/nsp2489K489RaAgaGg55AY.440.00003
ORF1ab/nsp2489K489NaaGaaT55AY.46.10.005133
ORF1ab/nsp2489K489NaaGaaC45AY.620.001743
ORF1ab/nsp2489K489NaaGaaT15AY.620.000436
ORF1ab/nsp2489K489NaaGaaT35AY.750.000168
ORF1ab/nsp2489K489NaaGaaC25AY.750.000112
ORF1ab/nsp2489K489RaAgaGg55AY.940.002213
ORF1ab/nsp2489K489NaaGaaT55B.1.10.000091
ORF1ab/nsp2489K489KaaGaaA55B.1.1.5190.000199
ORF1ab/nsp2489K489VAAGGTC55B.1.1.70.000004
ORF1ab/nsp2489K489EAagGag55B.1.1770.000066
ORF1ab/nsp2489K489NaaGaaT55B.1.3510.000149
ORF1ab/nsp2489K489NaaGaaT35B.1.5260.000071
ORF1ab/nsp2489K489NaaGaaC25B.1.5260.000047
ORF1ab/nsp2489K489delAAG---55B.1.617.20.000019
ORF1ab/nsp2489K489MaAgaTg44All0.000001
ORF1ab/nsp2489K489del2aAGa--34All0.000001
ORF1ab/nsp2489K489YAaGTaT24All0
ORF1ab/nsp2489K489YAaGTaC24All0
ORF1ab/nsp2489K489del2AAGG--14All0
ORF1ab/nsp2489K489KaaGaaA44AY.1060.00134
ORF1ab/nsp2489K489NaaGaaT34AY.1130.000427
ORF1ab/nsp2489K489NaaGaaC14AY.1130.000142
ORF1ab/nsp2489K489NaaGaaT44AY.1160.001147
ORF1ab/nsp2489K489NaaGaaT34AY.120.000948
ORF1ab/nsp2489K489NaaGaaC14AY.120.000316
ORF1ab/nsp2489K489NaaGaaT34AY.1200.000112
ORF1ab/nsp2489K489NaaGaaC14AY.1200.000037
ORF1ab/nsp2489K489NaaGaaT24AY.260.000057
ORF1ab/nsp2489K489NaaGaaC24AY.260.000057
ORF1ab/nsp2489K489KaaGaaA44AY.330.000267
ORF1ab/nsp2489K489NaaGaaT34AY.34.10.00153
ORF1ab/nsp2489K489NaaGaaC14AY.34.10.00051
ORF1ab/nsp2489K489NaaGaaT44AY.360.000593
ORF1ab/nsp2489K489TaAgaCg44AY.390.000099
ORF1ab/nsp2489K489NaaGaaT34AY.5.30.001012
ORF1ab/nsp2489K489NaaGaaC14AY.5.30.000337
ORF1ab/nsp2489K489NaaGaaT34AY.540.000286
ORF1ab/nsp2489K489NaaGaaC14AY.540.000095
ORF1ab/nsp2489K489NaaGaaT34AY.670.001393
ORF1ab/nsp2489K489NaaGaaC14AY.670.000464
ORF1ab/nsp2489K489NaaGaaT44AY.740.000463
ORF1ab/nsp2489K489NaaGaaT44AY.770.00451
ORF1ab/nsp2489K489NaaGaaT44AY.890.019608
ORF1ab/nsp2489K489NaaGaaT44AY.99.20.000369
ORF1ab/nsp2489K489TaAgaCg44B.10.000037
ORF1ab/nsp2489K489EAagGag44B.1.10.000073
ORF1ab/nsp2489K489KaaGaaA44B.1.1.2260.023256
ORF1ab/nsp2489K489LAAgCTg44B.1.1.70.000004
ORF1ab/nsp2489K489QAagCag44B.1.1.70.000004
ORF1ab/nsp2489K489TaAgaCg44B.1.1.70.000004
ORF1ab/nsp2489K489RaAgaGg44B.1.20.000035
ORF1ab/nsp2489K489KaaGaaA44B.1.2430.000278
ORF1ab/nsp2489K489KaaGaaA44B.1.3180.153846
ORF1ab/nsp2489K489NaaGaaT44B.1.5960.000349
ORF1ab/nsp2489K489EAagGag44P.10.000063
ORF1ab/nsp2489K489KaaGaaA44P.1.150.000929
ORF1ab/nsp2489K489IaAGaTA23All0
ORF1ab/nsp2489K489IaAGaTT13All0
ORF1ab/nsp2489K489RaAgaGg33AY.1030.000019
ORF1ab/nsp2489K489LAAGCTC13AY.1130.000142
ORF1ab/nsp2489K489LAAGTTA13AY.1130.000142
ORF1ab/nsp2489K489LAAGCTA13AY.1130.000142
ORF1ab/nsp2489K489NaaGaaT33AY.1210.000406
ORF1ab/nsp2489K489KaaGaaA33AY.140.000264
ORF1ab/nsp2489K489EAagGag33AY.250.000018
ORF1ab/nsp2489K489KaaGaaA33AY.340.000291
ORF1ab/nsp2489K489EAagGag33AY.430.000013
ORF1ab/nsp2489K489QAagCag23AY.430.000009
ORF1ab/nsp2489K489QAaGCaA13AY.430.000004
ORF1ab/nsp2489K489NaaGaaT33AY.610.000314
ORF1ab/nsp2489K489KaaGaaA33AY.99.20.000276
ORF1ab/nsp2489K489EAagGag33B.10.000027
ORF1ab/nsp2489K489RaAgaGg33B.1.10.000054
ORF1ab/nsp2489K489NaaGaaT33B.1.1.2140.000166
ORF1ab/nsp2489K489NaaGaaT33B.1.1.2840.000322
ORF1ab/nsp2489K489NaaGaaT33B.1.1.3110.001074
ORF1ab/nsp2489K489delAAG---33B.1.1.330.001263
ORF1ab/nsp2489K489EAagGag33B.1.1.5150.06
ORF1ab/nsp2489K489del1aaGaa-23B.1.1.70.000002
ORF1ab/nsp2489K489del1AAG-NN13B.1.1.70.000001
ORF1ab/nsp2489K489KaaGaaA33B.1.2580.0002
ORF1ab/nsp2489K489QAagCag33B.1.258.30.005025
ORF1ab/nsp2489K489NaaGaaT33B.1.36.180.001261
ORF1ab/nsp2489K489NaaGaaT33B.1.3670.002377
ORF1ab/nsp2489K489NaaGaaT33B.1.4090.002344
ORF1ab/nsp2489K489KaaGaaA33B.1.4270.000151
ORF1ab/nsp2489K489RaAgaGg33B.1.4290.000071
ORF1ab/nsp2489K489TaAgaCg33B.1.4290.000071
ORF1ab/nsp2489K489KaaGaaA33B.1.466.20.001174
ORF1ab/nsp2489K489NaaGaaT33B.1.5700.008824
ORF1ab/nsp2489K489KaaGaaA33B.1.5960.000261
ORF1ab/nsp2489K489delAAG---33B.1.617.10.000387
ORF1ab/nsp2489K489QAagCag33B.1.617.20.000011
ORF1ab/nsp2489K489NaaGaaT33C.20.048387
ORF1ab/nsp2489K489EAagGag33C.370.000348
ORF1ab/nsp2489K489RaAgaGg33P.10.000047
ORF1ab/nsp2489K489NaaGaaT33P.1.170.000485
ORF1ab/nsp2489K489NaaGaaT33P.1.70.000958
ORF1ab/nsp2489K489delAAG---220.111111
ORF1ab/nsp2489K489KaaGaaA22A.280.005291
ORF1ab/nsp2489K489HAaGCaT12All0
ORF1ab/nsp2489K489FAAGTTC12All0
ORF1ab/nsp2489K489HAaGCaC12All0
ORF1ab/nsp2489K489FAAGTTT12All0
ORF1ab/nsp2489K489IaAGaTA12AY.1020.000027
ORF1ab/nsp2489K489IaAGaTT12AY.1020.000027
ORF1ab/nsp2489K489NaaGaaT22AY.1080.002205
ORF1ab/nsp2489K489KaaGaaA22AY.116.10.000623
ORF1ab/nsp2489K489EAagGag22AY.1180.000125
ORF1ab/nsp2489K489RaAgaGg22AY.120.10.000642
ORF1ab/nsp2489K489KaaGaaA22AY.120.20.002571
ORF1ab/nsp2489K489NaaGaaT22AY.120.20.002571
ORF1ab/nsp2489K489KaaGaaA22AY.130.000322
ORF1ab/nsp2489K489NaaGaaT12AY.130.000161
ORF1ab/nsp2489K489NaaGaaC12AY.130.000161
ORF1ab/nsp2489K489KaaGaaA22AY.270.000129
ORF1ab/nsp2489K489KaaGaaA22AY.30.00002
ORF1ab/nsp2489K489NaaGaaT22AY.3.10.000171
ORF1ab/nsp2489K489RaAgaGg22AY.330.000134
ORF1ab/nsp2489K489delAAG---22AY.350.000466
ORF1ab/nsp2489K489QAagCag22AY.40.000003
ORF1ab/nsp2489K489TaAgaCg22AY.40.000003
ORF1ab/nsp2489K489NaaGaaT22AY.420.00008
ORF1ab/nsp2489K489XAaGTaA12AY.430.000004
ORF1ab/nsp2489K489LAAGTTA12AY.430.000004
ORF1ab/nsp2489K489XAagTag12AY.430.000004
ORF1ab/nsp2489K489LAAgTTg12AY.430.000004
ORF1ab/nsp2489K489QAagCag22AY.440.000012
ORF1ab/nsp2489K489KaaGaaA22AY.460.000208
ORF1ab/nsp2489K489NaaGaaT22AY.46.40.000329
ORF1ab/nsp2489K489NaaGaaC12AY.470.000031
ORF1ab/nsp2489K489NaaGaaT12AY.470.000031
ORF1ab/nsp2489K489EAagGag22AY.590.001059
ORF1ab/nsp2489K489NaaGaaT22AY.590.001059
ORF1ab/nsp2489K489KaaGaaA22AY.610.00021
ORF1ab/nsp2489K489NaaGaaT22AY.650.001066
ORF1ab/nsp2489K489NaaGaaT12AY.730.000665
ORF1ab/nsp2489K489NaaGaaC12AY.730.000665
ORF1ab/nsp2489K489EAagGag22AY.75.10.000361
ORF1ab/nsp2489K489NaaGaaT22AY.9.20.000073
ORF1ab/nsp2489K489delAAG---22AY.990.002099
ORF1ab/nsp2489K489NaaGaaT22AZ.20.001642
ORF1ab/nsp2489K489QAagCag22B.10.000018
ORF1ab/nsp2489K489del1aaGaa-12B.10.000009
ORF1ab/nsp2489K489del1AaGCa-12B.10.000009
ORF1ab/nsp2489K489LAAgCTg12B.1.10.000018
ORF1ab/nsp2489K489LAAgTTg12B.1.10.000018
ORF1ab/nsp2489K489TaAgaCg22B.1.1.2220.000408
ORF1ab/nsp2489K489NaaGaaT22B.1.1.2220.000408
ORF1ab/nsp2489K489RaAgaGg22B.1.1.330.000842
ORF1ab/nsp2489K489delAAG---22B.1.1.3480.001592
ORF1ab/nsp2489K489NaaGaaT22B.1.1.3750.02381
ORF1ab/nsp2489K489NaaGaaT22B.1.1.390.001019
ORF1ab/nsp2489K489XAaGTaA22B.1.1.70.000002
ORF1ab/nsp2489K489del2AAGG--12B.1.1.70.000001
ORF1ab/nsp2489K489del2aAGa--12B.1.1.70.000001
ORF1ab/nsp2489K489KaaGaaA22B.1.1770.000026
ORF1ab/nsp2489K489KaaGaaA22B.1.177.210.000153
ORF1ab/nsp2489K489RaAgaGg22B.1.177.600.000437
ORF1ab/nsp2489K489KaaGaaA22B.1.177.810.000379
ORF1ab/nsp2489K489MaAgaTg22B.1.177.860.000367
ORF1ab/nsp2489K489del2aAGa--22B.1.20.000018
ORF1ab/nsp2489K489KaaGaaA22B.1.2100.004264
ORF1ab/nsp2489K489KaaGaaA22B.1.2210.000142
ORF1ab/nsp2489K489NaaGaaT22B.1.2400.000431
ORF1ab/nsp2489K489RaAgaGg22B.1.3510.000059
ORF1ab/nsp2489K489KaaGaaA22B.1.3510.000059
ORF1ab/nsp2489K489EAagGag22B.1.360.000292
ORF1ab/nsp2489K489RaAgaGg22B.1.36.270.001527
ORF1ab/nsp2489K489NaaGaaT22B.1.3690.00057
ORF1ab/nsp2489K489delAAG---22B.1.3750.001639
ORF1ab/nsp2489K489delAAG---22B.1.4240.016129
ORF1ab/nsp2489K489delAAG---22B.1.4290.000047
ORF1ab/nsp2489K489NaaGaaT22B.1.5650.001621
ORF1ab/nsp2489K489NaaGaaT22B.1.5750.000607
ORF1ab/nsp2489K489TaAgaCg22B.1.617.20.000008
ORF1ab/nsp2489K489NaaGaaT22B.1.6210.000177
ORF1ab/nsp2489K489NaaGaaT22B.1.6370.000146
ORF1ab/nsp2489K489KaaGaaA22C.370.000232
ORF1ab/nsp2489K489NaaGaaT22C.370.000232
ORF1ab/nsp2489K489delAAG---22N.60.014184
ORF1ab/nsp2489K489NaaGaaT22P.20.000373
ORF1ab/nsp2489K489KaaGaaA22R.10.00018
ORF1ab/nsp2489K489NaaGaaT110.055556
ORF1ab/nsp2489K489delAAG---11A0.000387
ORF1ab/nsp2489K489RaAgaGg11A.10.000282
ORF1ab/nsp2489K489EAagGag11A.20.000662
ORF1ab/nsp2489K489delAAG---11A.23.10.000704
ORF1ab/nsp2489K489KaaGaaA11A.50.001923
ORF1ab/nsp2489K489KaaGaaA11AD.20.000219
ORF1ab/nsp2489K489NaaGaaT11AD.20.000219
ORF1ab/nsp2489K489RaAgaGg11AD.20.000219
ORF1ab/nsp2489K489GAAgGGg11All0
ORF1ab/nsp2489K489SaAGaGC11All0
ORF1ab/nsp2489K489PAAgCCg11All0
ORF1ab/nsp2489K489RaAgaGg11AY.1000.000046
ORF1ab/nsp2489K489TaAgaCg11AY.1020.000027
ORF1ab/nsp2489K489FAAGTTT11AY.1020.000027
ORF1ab/nsp2489K489LAAGTTA11AY.1020.000027
ORF1ab/nsp2489K489YAaGTaT11AY.1020.000027
ORF1ab/nsp2489K489XAaGTaA11AY.1020.000027
ORF1ab/nsp2489K489RaAgaGg11AY.1020.000027
ORF1ab/nsp2489K489MaAgaTg11AY.1020.000027
ORF1ab/nsp2489K489EAagGag11AY.1030.000006
ORF1ab/nsp2489K489TaAgaCg11AY.1030.000006
ORF1ab/nsp2489K489RaAgaGg11AY.1050.000643
ORF1ab/nsp2489K489NaaGaaC11AY.1050.000643
ORF1ab/nsp2489K489delAAG---11AY.1080.001103
ORF1ab/nsp2489K489TaAgaCg11AY.1100.000113
ORF1ab/nsp2489K489TaAgaCg11AY.1130.000142
ORF1ab/nsp2489K489FAAGTTC11AY.1130.000142
ORF1ab/nsp2489K489YAaGTaC11AY.1130.000142
ORF1ab/nsp2489K489HAaGCaC11AY.1130.000142
ORF1ab/nsp2489K489QAaGCaA11AY.1130.000142
ORF1ab/nsp2489K489XAaGTaA11AY.1130.000142
ORF1ab/nsp2489K489RaAgaGg11AY.1140.000231
ORF1ab/nsp2489K489KaaGaaA11AY.1190.000035
ORF1ab/nsp2489K489del1aaGaa-11AY.1190.000035
ORF1ab/nsp2489K489RaAgaGg11AY.1200.000037
ORF1ab/nsp2489K489SaAGaGC11AY.120.10.000321
ORF1ab/nsp2489K489TaAgaCg11AY.1210.000135
ORF1ab/nsp2489K489NaaGaaC11AY.160.00038
ORF1ab/nsp2489K489NaaGaaT11AY.16.10.00047
ORF1ab/nsp2489K489TaAgaCg11AY.16.10.00047
ORF1ab/nsp2489K489NaaGaaC11AY.190.00114
ORF1ab/nsp2489K489NaaGaaC11AY.220.002092
ORF1ab/nsp2489K489delAAG---11AY.230.00007
ORF1ab/nsp2489K489NaaGaaT11AY.240.000431
ORF1ab/nsp2489K489delAAG---11AY.250.000006
ORF1ab/nsp2489K489KaaGaaA11AY.260.000028
ORF1ab/nsp2489K489RaAgaGg11AY.290.000016
ORF1ab/nsp2489K489delAAG---11AY.29.10.000221
ORF1ab/nsp2489K489delAAG---11AY.30.00001
ORF1ab/nsp2489K489EAagGag11AY.30.00001
ORF1ab/nsp2489K489RaAgaGg11AY.30.00001
ORF1ab/nsp2489K489KaaGaaA11AY.3.10.000085
ORF1ab/nsp2489K489XAagTag11AY.320.000532
ORF1ab/nsp2489K489QAagCag11AY.330.000067
ORF1ab/nsp2489K489RaAgaGg11AY.350.000233
ORF1ab/nsp2489K489RaAgaGg11AY.380.000499
ORF1ab/nsp2489K489delAAG---11AY.40.000002
ORF1ab/nsp2489K489NaaGaaT11AY.4.20.000022
ORF1ab/nsp2489K489NaaGaaC11AY.4.50.000107
ORF1ab/nsp2489K489MaAgaTg11AY.430.000004
ORF1ab/nsp2489K489HAaGCaT11AY.430.000004
ORF1ab/nsp2489K489IaAGaTA11AY.430.000004
ORF1ab/nsp2489K489del1aaGaa-11AY.440.000006
ORF1ab/nsp2489K489LAAgTTg11AY.440.000006
ORF1ab/nsp2489K489GAAgGGg11AY.440.000006
ORF1ab/nsp2489K489EAagGag11AY.440.000006
ORF1ab/nsp2489K489delAAG---11AY.440.000006
ORF1ab/nsp2489K489EAagGag11AY.450.000122
ORF1ab/nsp2489K489delAAG---11AY.460.000104
ORF1ab/nsp2489K489NaaGaaT11AY.46.20.000635
ORF1ab/nsp2489K489delAAG---11AY.46.60.000072
ORF1ab/nsp2489K489RaAgaGg11AY.470.000031
ORF1ab/nsp2489K489EAagGag11AY.480.000465
ORF1ab/nsp2489K489KaaGaaA11AY.50.000021
ORF1ab/nsp2489K489KaaGaaA11AY.5.40.000277
ORF1ab/nsp2489K489NaaGaaC11AY.510.000909
ORF1ab/nsp2489K489KaaGaaA11AY.530.000288
ORF1ab/nsp2489K489TaAgaCg11AY.540.000095
ORF1ab/nsp2489K489KaaGaaA11AY.540.000095
ORF1ab/nsp2489K489NaaGaaC11AY.560.001605
ORF1ab/nsp2489K489RaAgaGg11AY.60.000041
ORF1ab/nsp2489K489EAagGag11AY.60.000041
ORF1ab/nsp2489K489NaaGaaT11AY.600.000938
ORF1ab/nsp2489K489EAagGag11AY.610.000105
ORF1ab/nsp2489K489EAagGag11AY.650.000533
ORF1ab/nsp2489K489YAaGTaC11AY.670.000464
ORF1ab/nsp2489K489KaaGaaA11AY.670.000464
ORF1ab/nsp2489K489NaaGaaT11AY.680.000274
ORF1ab/nsp2489K489KaaGaaA11AY.70.000196
ORF1ab/nsp2489K489KaaGaaA11AY.700.000209
ORF1ab/nsp2489K489NaaGaaT11AY.700.000209
ORF1ab/nsp2489K489RaAgaGg11AY.730.000665
ORF1ab/nsp2489K489KaaGaaA11AY.740.000116
ORF1ab/nsp2489K489QAagCag11AY.750.000056
ORF1ab/nsp2489K489NaaGaaT11AY.75.10.00018
ORF1ab/nsp2489K489NaaGaaC11AY.780.001541
ORF1ab/nsp2489K489NaaGaaC11AY.820.001357
ORF1ab/nsp2489K489del1AaGCa-11AY.840.000437
ORF1ab/nsp2489K489KaaGaaA11AY.840.000437
ORF1ab/nsp2489K489NaaGaaC11AY.850.000427
ORF1ab/nsp2489K489NaaGaaC11AY.870.000833
ORF1ab/nsp2489K489delAAG---11AY.9.20.000037
ORF1ab/nsp2489K489EAagGag11AY.9.20.000037
ORF1ab/nsp2489K489TaAgaCg11AY.900.000684
ORF1ab/nsp2489K489NaaGaaT11AY.950.000761
ORF1ab/nsp2489K489RaAgaGg11AY.980.000079
ORF1ab/nsp2489K489NaaGaaC11AY.980.000079
ORF1ab/nsp2489K489delAAG---11B0.000128
ORF1ab/nsp2489K489KaaGaaA11B0.000128
ORF1ab/nsp2489K489NaaGaaT11B0.000128
ORF1ab/nsp2489K489KaaGaaA11B.1.1.10.000327
ORF1ab/nsp2489K489RaAgaGg11B.1.1.1890.001513
ORF1ab/nsp2489K489KaaGaaA11B.1.1.2220.000204
ORF1ab/nsp2489K489NaaGaaT11B.1.1.2550.00303
ORF1ab/nsp2489K489EAagGag11B.1.1.2740.005051
ORF1ab/nsp2489K489NaaGaaT11B.1.1.3040.002809
ORF1ab/nsp2489K489EAagGag11B.1.1.3060.000438
ORF1ab/nsp2489K489delAAG---11B.1.1.3060.000438
ORF1ab/nsp2489K489NaaGaaT11B.1.1.3520.03125
ORF1ab/nsp2489K489KaaGaaA11B.1.1.3540.004386
ORF1ab/nsp2489K489KaaGaaA11B.1.1.3850.004464
ORF1ab/nsp2489K489delAAG---11B.1.1.4160.000905
ORF1ab/nsp2489K489RaAgaGg11B.1.1.4480.002033
ORF1ab/nsp2489K489RaAgaGg11B.1.1.950.019608
ORF1ab/nsp2489K489NaaGaaT11B.1.110.30.000718
ORF1ab/nsp2489K489TaAgaCg11B.1.1110.001175
ORF1ab/nsp2489K489QAagCag11B.1.1570.002985
ORF1ab/nsp2489K489XAagTag11B.1.1600.000031
ORF1ab/nsp2489K489NaaGaaT11B.1.1600.000031
ORF1ab/nsp2489K489EAagGag11B.1.1600.000031
ORF1ab/nsp2489K489TaAgaCg11B.1.1770.000013
ORF1ab/nsp2489K489delAAG---11B.1.1770.000013
ORF1ab/nsp2489K489KaaGaaA11B.1.177.180.00116
ORF1ab/nsp2489K489NaaGaaT11B.1.177.330.001645
ORF1ab/nsp2489K489NaaGaaT11B.1.177.570.000281
ORF1ab/nsp2489K489KaaGaaA11B.1.177.580.001332
ORF1ab/nsp2489K489KaaGaaA11B.1.177.730.000566
ORF1ab/nsp2489K489RaAgaGg11B.1.177.810.000189
ORF1ab/nsp2489K489NaaGaaT11B.1.177.810.000189
ORF1ab/nsp2489K489delAAG---11B.1.1790.003759
ORF1ab/nsp2489K489delAAG---11B.1.20.000009
ORF1ab/nsp2489K489QAagCag11B.1.20.000009
ORF1ab/nsp2489K489del1aaGaa-11B.1.20.000009
ORF1ab/nsp2489K489NaaGaaC11B.1.2210.000071
ORF1ab/nsp2489K489NaaGaaT11B.1.2320.000537
ORF1ab/nsp2489K489NaaGaaT11B.1.2340.000132
ORF1ab/nsp2489K489delAAG---11B.1.2430.00007
ORF1ab/nsp2489K489KaaGaaA11B.1.2790.000514
ORF1ab/nsp2489K489KaaGaaA11B.1.2930.0125
ORF1ab/nsp2489K489KaaGaaA11B.1.3110.000275
ORF1ab/nsp2489K489RaAgaGg11B.1.360.000146
ORF1ab/nsp2489K489QAagCag11B.1.360.000146
ORF1ab/nsp2489K489KaaGaaA11B.1.36.10.00114
ORF1ab/nsp2489K489KaaGaaA11B.1.36.180.00042
ORF1ab/nsp2489K489NaaGaaT11B.1.36.290.000517
ORF1ab/nsp2489K489del1aaGaa-11B.1.36.290.000517
ORF1ab/nsp2489K489RaAgaGg11B.1.3750.00082
ORF1ab/nsp2489K489VAAGGTC11B.1.3750.00082
ORF1ab/nsp2489K489RaAgaGg11B.1.3960.000706
ORF1ab/nsp2489K489EAagGag11B.1.4270.00005
ORF1ab/nsp2489K489NaaGaaT11B.1.4280.00102
ORF1ab/nsp2489K489XAagTag11B.1.4560.003268
ORF1ab/nsp2489K489NaaGaaT11B.1.4970.000315
ORF1ab/nsp2489K489RaAgaGg11B.1.5080.025641
ORF1ab/nsp2489K489NaaGaaT11B.1.5230.002451
ORF1ab/nsp2489K489RaAgaGg11B.1.5250.000113
ORF1ab/nsp2489K489delAAG---11B.1.5260.000024
ORF1ab/nsp2489K489KaaGaaA11B.1.5260.000024
ORF1ab/nsp2489K489KaaGaaA11B.1.5380.008065
ORF1ab/nsp2489K489delAAG---11B.1.5610.000397
ORF1ab/nsp2489K489KaaGaaA11B.1.5760.000907
ORF1ab/nsp2489K489NaaGaaT11B.1.6090.000479
ORF1ab/nsp2489K489KaaGaaA11B.1.617.10.000129
ORF1ab/nsp2489K489YAaGTaT11B.1.617.20.000004
ORF1ab/nsp2489K489PAAgCCg11B.1.617.20.000004
ORF1ab/nsp2489K489EAagGag11B.1.617.30.002985
ORF1ab/nsp2489K489delAAG---11B.1.6200.000946
ORF1ab/nsp2489K489KaaGaaA11B.1.6200.000946
ORF1ab/nsp2489K489NaaGaaT11B.1.6250.002353
ORF1ab/nsp2489K489KaaGaaA11B.1.6280.000352
ORF1ab/nsp2489K489KaaGaaA11B.1.6310.003367
ORF1ab/nsp2489K489EAagGag11B.400.000364
ORF1ab/nsp2489K489delAAG---11B.570.015152
ORF1ab/nsp2489K489KaaGaaA11C.260.007353
ORF1ab/nsp2489K489NaaGaaT11C.360.000911
ORF1ab/nsp2489K489NaaGaaT11C.60.037037
ORF1ab/nsp2489K489RaAgaGg11D.20.000075
ORF1ab/nsp2489K489KaaGaaA11D.20.000075
ORF1ab/nsp2489K489delAAG---11P.10.000016
ORF1ab/nsp2489K489EAagGag11P.1.70.000319
ORF1ab/nsp2489K489RaAgaGg11P.1.70.000319
ORF1ab/nsp2489K489delAAG---11P.20.000187
ORF1ab/nsp2489K489EAagGag11P.20.000187
ORF1ab/nsp2489K489QAagCag11Q.10.000126
ORF1ab/nsp2489K489EAagGag11Q.30.000145
ORF1ab/nsp2489K489RaAgaGg11Q.40.000455
ORF1ab/nsp2489K489EAagGag11Q.40.000455
ORF1ab/nsp2489K489KaaGaaA11Q.80.000165
ORF1ab/nsp2489K489delAAG---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.