CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 485 | V485I | V665I | nonsyn | Gtc | Atc | 27644 | 27642 | 0.999928 | 2258-2260 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 27642 | 27644 | All | 0.005287 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 19546 | 19548 | AY.42 | 0.786338 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 7180 | 7180 | B.1.234 | 0.947355 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 274 | 274 | B.1 | 0.00251 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 122 | 122 | B.1.2 | 0.001074 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 43 | 43 | AY.39 | 0.001063 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 43 | 43 | B.1.596 | 0.003747 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 38 | 38 | B.1.617.2 | 0.000143 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 37 | 37 | B.1.1.7 | 0.000033 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 36 | 36 | AY.43 | 0.000159 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 23 | 23 | AY.103 | 0.000143 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 13 | 13 | AY.23.1 | 0.005426 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 6 | 6 | B.1.349 | 0.004289 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 5 | 5 | B.1.396 | 0.003529 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 5 | 5 | B.1.561 | 0.001985 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 4 | 4 | B | 0.000511 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 3 | 3 | AY.63 | 0.001161 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 3 | 3 | B.1.403 | 0.009804 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 3 | 3 | B.1.580 | 0.012195 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 2 | 2 | B.1.590 | 0.009091 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 485 | V485I | Gtc | Atc | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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