CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 483 | Q483K | Q663K | nonsyn | Caa | Aaa | 958 | 958 | 1 | 2252-2254 |
ORF1ab/nsp2 | 483 | Q483Q | Q663Q | syn | caA | caG | 376 | 376 | 1 | 2252-2254 |
ORF1ab/nsp2 | 483 | Q483R | Q663R | nonsyn | cAa | cGa | 164 | 164 | 1 | 2252-2254 |
ORF1ab/nsp2 | 483 | Q483del | Q663del | del | CAA | --- | 65 | 65 | 1 | 2252-2254 |
ORF1ab/nsp2 | 483 | Q483H | Q663H | nonsyn | caA | caC | 33 | 22 | 0.666667 | 2252-2254 |
ORF1ab/nsp2 | 483 | Q483H | Q663H | nonsyn | caA | caT | 33 | 11 | 0.333333 | 2252-2254 |
ORF1ab/nsp2 | 483 | Q483E | Q663E | nonsyn | Caa | Gaa | 8 | 8 | 1 | 2252-2254 |
ORF1ab/nsp2 | 483 | Q483X | Q663X | nonsyn | Caa | Taa | 6 | 6 | 1 | 2252-2254 |
ORF1ab/nsp2 | 483 | Q483L | Q663L | nonsyn | cAa | cTa | 5 | 5 | 1 | 2252-2254 |
ORF1ab/nsp2 | 483 | Q483del1 | Q663del1 | del | Caa | -aa | 2 | 2 | 1 | 2252-2254 |
ORF1ab/nsp2 | 483 | Q483F | Q663F | nonsyn | CAA | TTT | 1 | 1 | 1 | 2252-2254 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 958 | 958 | All | 0.000183 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 376 | 376 | All | 0.000072 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 367 | 367 | B.1.1.7 | 0.000329 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 218 | 218 | B.1.1.7 | 0.000195 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 164 | 164 | All | 0.000031 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 114 | 114 | AY.73 | 0.075848 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 69 | 69 | AY.26 | 0.001953 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 69 | 69 | AY.4 | 0.000107 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 65 | 65 | All | 0.000012 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 45 | 45 | B.1.1.222 | 0.00918 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 44 | 44 | B.1.524 | 0.061885 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 37 | 37 | AY.34 | 0.003588 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 22 | 33 | All | 0.000004 |
ORF1ab/nsp2 | 483 | Q483H | caA | caT | 11 | 33 | All | 0.000002 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 33 | 33 | B.1.617.2 | 0.000124 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 31 | 31 | B.1.617.2 | 0.000117 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 24 | 24 | AY.66 | 0.025668 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 24 | 24 | B.1 | 0.00022 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 24 | 24 | B.1.407 | 0.857143 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 20 | 20 | B.1 | 0.000183 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 18 | 18 | Q.8 | 0.002968 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp2 | 483 | Q483E | Caa | Gaa | 8 | 8 | All | 0.000002 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 8 | 8 | AY.99 | 0.008395 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 6 | 7 | B.1.258 | 0.000399 |
ORF1ab/nsp2 | 483 | Q483H | caA | caT | 1 | 7 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 483 | Q483X | Caa | Taa | 6 | 6 | All | 0.000001 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp2 | 483 | Q483L | cAa | cTa | 5 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 483 | Q483H | caA | caT | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 483 | Q483del1 | Caa | -aa | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 2 | 2 | B.1.1.333 | 0.002153 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 2 | 2 | B.1.177.2 | 0.009091 |
ORF1ab/nsp2 | 483 | Q483X | Caa | Taa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 2 | 2 | B.1.218 | 0.010309 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 483 | Q483E | Caa | Gaa | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 483 | Q483F | CAA | TTT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 483 | Q483H | caA | caT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 483 | Q483E | Caa | Gaa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 483 | Q483X | Caa | Taa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 483 | Q483L | cAa | cTa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 483 | Q483H | caA | caT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 483 | Q483E | Caa | Gaa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 483 | Q483del1 | Caa | -aa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 483 | Q483E | Caa | Gaa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 483 | Q483H | caA | caT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 483 | Q483L | cAa | cTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp2 | 483 | Q483X | Caa | Taa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 483 | Q483L | cAa | cTa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 483 | Q483H | caA | caT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.1.113 | 0.006993 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 483 | Q483L | cAa | cTa | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 483 | Q483del1 | Caa | -aa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 483 | Q483X | Caa | Taa | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp2 | 483 | Q483L | cAa | cTa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 483 | Q483H | caA | caC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 483 | Q483H | caA | caT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 483 | Q483X | Caa | Taa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | B.1.240.2 | 0.030303 |
ORF1ab/nsp2 | 483 | Q483E | Caa | Gaa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp2 | 483 | Q483H | caA | caT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 483 | Q483H | caA | caT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 483 | Q483F | CAA | TTT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 483 | Q483H | caA | caT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 483 | Q483E | Caa | Gaa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 483 | Q483Q | caA | caG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 483 | Q483R | cAa | cGa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 483 | Q483E | Caa | Gaa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 483 | Q483del | CAA | --- | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 483 | Q483K | Caa | Aaa | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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