CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 48 | V48V | V228V | syn | gtA | gtG | 2072 | 2036 | 0.982625 | 947-949 |
ORF1ab/nsp2 | 48 | V48V | V228V | syn | gtA | gtT | 2072 | 33 | 0.0159266 | 947-949 |
ORF1ab/nsp2 | 48 | V48V | V228V | syn | gtA | gtC | 2072 | 3 | 0.00144788 | 947-949 |
ORF1ab/nsp2 | 48 | V48I | V228I | nonsyn | Gta | Ata | 738 | 738 | 1 | 947-949 |
ORF1ab/nsp2 | 48 | V48L | V228L | nonsyn | Gta | Tta | 414 | 411 | 0.992754 | 947-949 |
ORF1ab/nsp2 | 48 | V48L | V228L | nonsyn | Gta | Cta | 414 | 3 | 0.00724638 | 947-949 |
ORF1ab/nsp2 | 48 | V48A | V228A | nonsyn | gTa | gCa | 40 | 39 | 0.975 | 947-949 |
ORF1ab/nsp2 | 48 | V48A | V228A | nonsyn | gTA | gCG | 40 | 1 | 0.025 | 947-949 |
ORF1ab/nsp2 | 48 | V48del | V228del | del | GTA | --- | 32 | 32 | 1 | 947-949 |
ORF1ab/nsp2 | 48 | V48G | V228G | nonsyn | gTa | gGa | 3 | 2 | 0.666667 | 947-949 |
ORF1ab/nsp2 | 48 | V48G | V228G | nonsyn | gTA | gGT | 3 | 1 | 0.333333 | 947-949 |
ORF1ab/nsp2 | 48 | V48F | V228F | nonsyn | GtA | TtT | 2 | 2 | 1 | 947-949 |
ORF1ab/nsp2 | 48 | V48X | V228X | nonsyn | GTa | TGa | 2 | 1 | 0.5 | 947-949 |
ORF1ab/nsp2 | 48 | V48T | V228T | nonsyn | GTA | ACG | 2 | 1 | 0.5 | 947-949 |
ORF1ab/nsp2 | 48 | V48T | V228T | nonsyn | GTa | ACa | 2 | 1 | 0.5 | 947-949 |
ORF1ab/nsp2 | 48 | V48X | V228X | nonsyn | GTA | TAG | 2 | 1 | 0.5 | 947-949 |
ORF1ab/nsp2 | 48 | V48C | V228C | nonsyn | GTA | TGT | 1 | 1 | 1 | 947-949 |
ORF1ab/nsp2 | 48 | V48M | V228M | nonsyn | GtA | AtG | 1 | 1 | 1 | 947-949 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2036 | 2072 | All | 0.000389 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 33 | 2072 | All | 0.000006 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtC | 3 | 2072 | All | 0.000001 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 738 | 738 | All | 0.000141 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 678 | 682 | AY.4 | 0.001055 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 2 | 682 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtC | 2 | 682 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 463 | 482 | B.1.1.7 | 0.000414 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 19 | 482 | B.1.1.7 | 0.000017 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 411 | 414 | All | 0.000079 |
ORF1ab/nsp2 | 48 | V48L | Gta | Cta | 3 | 414 | All | 0.000001 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 391 | 391 | AY.4 | 0.000609 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 122 | 122 | B.1.617.2 | 0.000459 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 102 | 102 | B.1.617.2 | 0.000384 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 84 | 84 | AY.44 | 0.000511 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 65 | 65 | AY.103 | 0.000404 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 57 | 57 | AY.102 | 0.001511 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 55 | 55 | AY.44 | 0.000335 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 42 | 43 | AY.103 | 0.000261 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 1 | 43 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 39 | 40 | All | 0.000007 |
ORF1ab/nsp2 | 48 | V48A | gTA | gCG | 1 | 40 | All | 0 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 40 | 40 | AY.43 | 0.000177 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 37 | 37 | B.1.1.7 | 0.000033 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 37 | 37 | B.1.621 | 0.003275 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 34 | 34 | B.1.401 | 0.278689 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 34 | 34 | R.1 | 0.00306 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 33 | 33 | B.1.2 | 0.000291 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 32 | 33 | B.1.2 | 0.000282 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 1 | 33 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 32 | 32 | All | 0.000006 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 32 | 32 | B.1.617.2 | 0.00012 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 30 | 30 | AM.3 | 1 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 25 | 25 | A.2.5.2 | 0.039308 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 21 | 21 | AY.102 | 0.000557 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 19 | 19 | AY.3 | 0.000189 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 16 | 16 | AY.47 | 0.000498 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 14 | 15 | B.1 | 0.000128 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 1 | 15 | B.1 | 0.000009 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 13 | 14 | AY.120 | 0.000483 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 1 | 14 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 14 | 14 | AY.34 | 0.001358 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 14 | 14 | B.1.524 | 0.019691 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 12 | 12 | B.1.429 | 0.000282 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 11 | 11 | AY.41 | 0.003233 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 11 | 11 | AY.9 | 0.000744 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 11 | 11 | B.1.177 | 0.000145 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 11 | 11 | C.36.3 | 0.006239 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 9 | 9 | AY.9 | 0.000608 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 8 | 8 | B.1.177.56 | 0.00534 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 8 | 8 | Q.1 | 0.001011 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 7 | 7 | B.1.1.284 | 0.000752 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 6 | 7 | B.1.351 | 0.000178 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 1 | 7 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 6 | 7 | B.1.525 | 0.000679 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 1 | 7 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 6 | 6 | AY.111 | 0.001099 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 6 | 6 | AY.116 | 0.001721 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 6 | 6 | B.1.177.4 | 0.001266 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 4 | 5 | AY.61 | 0.000419 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 1 | 5 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 4 | 4 | AZ.2 | 0.003284 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 4 | 4 | B.1.1.438 | 0.2 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 2 | 3 | 0.111111 | |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 48 | V48G | gTa | gGa | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 48 | V48G | gTA | gGT | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 3 | 3 | AY.72 | 0.004082 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp2 | 48 | V48L | Gta | Cta | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp2 | 48 | V48F | GtA | TtT | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 48 | V48G | gTA | gGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 48 | V48T | GTA | ACG | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 48 | V48T | GTa | ACa | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 48 | V48A | gTA | gCG | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 48 | V48G | gTa | gGa | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 48 | V48F | GtA | TtT | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 48 | V48T | GTA | ACG | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 48 | V48X | GTa | TGa | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 48 | V48X | GTA | TAG | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 48 | V48T | GTa | ACa | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | AM.4 | 0.007143 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | B.1.177.74 | 0.030303 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 48 | V48X | GTa | TGa | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 48 | V48C | GTA | TGT | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 48 | V48M | GtA | AtG | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AE.7 | 0.083333 |
ORF1ab/nsp2 | 48 | V48C | GTA | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 48 | V48M | GtA | AtG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 48 | V48X | GTA | TAG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 48 | V48L | Gta | Cta | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp2 | 48 | V48G | gTa | gGa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtC | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.489 | 0.043478 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 48 | V48L | Gta | Cta | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 48 | V48del | GTA | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 48 | V48A | gTa | gCa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 48 | V48I | Gta | Ata | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 48 | V48L | Gta | Tta | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 48 | V48V | gtA | gtG | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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