CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 48

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp248V48VV228VsyngtAgtG207220360.982625947-949
ORF1ab/nsp248V48VV228VsyngtAgtT2072330.0159266947-949
ORF1ab/nsp248V48VV228VsyngtAgtC207230.00144788947-949
ORF1ab/nsp248V48IV228InonsynGtaAta7387381947-949
ORF1ab/nsp248V48LV228LnonsynGtaTta4144110.992754947-949
ORF1ab/nsp248V48LV228LnonsynGtaCta41430.00724638947-949
ORF1ab/nsp248V48AV228AnonsyngTagCa40390.975947-949
ORF1ab/nsp248V48AV228AnonsyngTAgCG4010.025947-949
ORF1ab/nsp248V48delV228deldelGTA---32321947-949
ORF1ab/nsp248V48GV228GnonsyngTagGa320.666667947-949
ORF1ab/nsp248V48GV228GnonsyngTAgGT310.333333947-949
ORF1ab/nsp248V48FV228FnonsynGtATtT221947-949
ORF1ab/nsp248V48XV228XnonsynGTaTGa210.5947-949
ORF1ab/nsp248V48TV228TnonsynGTAACG210.5947-949
ORF1ab/nsp248V48TV228TnonsynGTaACa210.5947-949
ORF1ab/nsp248V48XV228XnonsynGTATAG210.5947-949
ORF1ab/nsp248V48CV228CnonsynGTATGT111947-949
ORF1ab/nsp248V48MV228MnonsynGtAAtG111947-949

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp248V48VgtAgtG20362072All0.000389
ORF1ab/nsp248V48VgtAgtT332072All0.000006
ORF1ab/nsp248V48VgtAgtC32072All0.000001
ORF1ab/nsp248V48IGtaAta738738All0.000141
ORF1ab/nsp248V48VgtAgtG678682AY.40.001055
ORF1ab/nsp248V48VgtAgtT2682AY.40.000003
ORF1ab/nsp248V48VgtAgtC2682AY.40.000003
ORF1ab/nsp248V48VgtAgtG463482B.1.1.70.000414
ORF1ab/nsp248V48VgtAgtT19482B.1.1.70.000017
ORF1ab/nsp248V48LGtaTta411414All0.000079
ORF1ab/nsp248V48LGtaCta3414All0.000001
ORF1ab/nsp248V48IGtaAta391391AY.40.000609
ORF1ab/nsp248V48LGtaTta122122B.1.617.20.000459
ORF1ab/nsp248V48VgtAgtG102102B.1.617.20.000384
ORF1ab/nsp248V48VgtAgtG8484AY.440.000511
ORF1ab/nsp248V48LGtaTta6565AY.1030.000404
ORF1ab/nsp248V48LGtaTta5757AY.1020.001511
ORF1ab/nsp248V48IGtaAta5555AY.440.000335
ORF1ab/nsp248V48VgtAgtG4243AY.1030.000261
ORF1ab/nsp248V48VgtAgtT143AY.1030.000006
ORF1ab/nsp248V48AgTagCa3940All0.000007
ORF1ab/nsp248V48AgTAgCG140All0
ORF1ab/nsp248V48VgtAgtG4040AY.430.000177
ORF1ab/nsp248V48IGtaAta3737B.1.1.70.000033
ORF1ab/nsp248V48VgtAgtG3737B.1.6210.003275
ORF1ab/nsp248V48VgtAgtG3434B.1.4010.278689
ORF1ab/nsp248V48VgtAgtG3434R.10.00306
ORF1ab/nsp248V48LGtaTta3333B.1.20.000291
ORF1ab/nsp248V48VgtAgtG3233B.1.20.000282
ORF1ab/nsp248V48VgtAgtT133B.1.20.000009
ORF1ab/nsp248V48delGTA---3232All0.000006
ORF1ab/nsp248V48IGtaAta3232B.1.617.20.00012
ORF1ab/nsp248V48VgtAgtG3030AM.31
ORF1ab/nsp248V48VgtAgtG2525A.2.5.20.039308
ORF1ab/nsp248V48VgtAgtG2121AY.1020.000557
ORF1ab/nsp248V48IGtaAta1919AY.30.000189
ORF1ab/nsp248V48IGtaAta1717AY.430.000075
ORF1ab/nsp248V48VgtAgtG1616AY.470.000498
ORF1ab/nsp248V48VgtAgtG1415B.10.000128
ORF1ab/nsp248V48VgtAgtT115B.10.000009
ORF1ab/nsp248V48LGtaTta1515B.1.1.70.000013
ORF1ab/nsp248V48VgtAgtG1314AY.1200.000483
ORF1ab/nsp248V48VgtAgtT114AY.1200.000037
ORF1ab/nsp248V48VgtAgtG1414AY.340.001358
ORF1ab/nsp248V48VgtAgtG1414AY.390.000346
ORF1ab/nsp248V48VgtAgtG1414B.1.5240.019691
ORF1ab/nsp248V48IGtaAta1313AY.250.000078
ORF1ab/nsp248V48LGtaTta1313AY.390.000321
ORF1ab/nsp248V48VgtAgtG1313AY.50.000268
ORF1ab/nsp248V48IGtaAta1313B.1.20.000114
ORF1ab/nsp248V48VgtAgtG1212AY.30.000119
ORF1ab/nsp248V48VgtAgtG1212B.1.4290.000282
ORF1ab/nsp248V48VgtAgtG1111AY.410.003233
ORF1ab/nsp248V48IGtaAta1111AY.90.000744
ORF1ab/nsp248V48VgtAgtG1111B.1.1770.000145
ORF1ab/nsp248V48VgtAgtG1111C.36.30.006239
ORF1ab/nsp248V48LGtaTta1010AY.430.000044
ORF1ab/nsp248V48IGtaAta1010AY.470.000311
ORF1ab/nsp248V48VgtAgtG99AY.200.00035
ORF1ab/nsp248V48LGtaTta99AY.200.00035
ORF1ab/nsp248V48IGtaAta99AY.60.00037
ORF1ab/nsp248V48LGtaTta99AY.90.000608
ORF1ab/nsp248V48IGtaAta88AY.1000.000368
ORF1ab/nsp248V48LGtaTta88AY.1170.000676
ORF1ab/nsp248V48VgtAgtG88AY.290.000126
ORF1ab/nsp248V48AgTagCa88AY.440.000049
ORF1ab/nsp248V48IGtaAta88AY.98.10.000387
ORF1ab/nsp248V48VgtAgtG88AY.98.10.000387
ORF1ab/nsp248V48VgtAgtG88B.1.1600.00025
ORF1ab/nsp248V48VgtAgtG88B.1.177.560.00534
ORF1ab/nsp248V48VgtAgtG88B.1.2580.000532
ORF1ab/nsp248V48VgtAgtG88B.1.360.001167
ORF1ab/nsp248V48VgtAgtG88Q.10.001011
ORF1ab/nsp248V48VgtAgtG77B.1.10.000127
ORF1ab/nsp248V48IGtaAta77B.1.1.2840.000752
ORF1ab/nsp248V48VgtAgtG67B.1.3510.000178
ORF1ab/nsp248V48VgtAgtT17B.1.3510.00003
ORF1ab/nsp248V48VgtAgtG67B.1.5250.000679
ORF1ab/nsp248V48VgtAgtT17B.1.5250.000113
ORF1ab/nsp248V48VgtAgtG66AY.1110.001099
ORF1ab/nsp248V48LGtaTta66AY.1160.001721
ORF1ab/nsp248V48VgtAgtG66AY.1190.000212
ORF1ab/nsp248V48IGtaAta66AY.140.000528
ORF1ab/nsp248V48LGtaTta66AY.290.000095
ORF1ab/nsp248V48LGtaTta66AY.40.000009
ORF1ab/nsp248V48VgtAgtG66B.1.177.40.001266
ORF1ab/nsp248V48VgtAgtG66P.10.000095
ORF1ab/nsp248V48IGtaAta55AY.1200.000186
ORF1ab/nsp248V48VgtAgtG55AY.260.000142
ORF1ab/nsp248V48VgtAgtG55AY.330.000334
ORF1ab/nsp248V48LGtaTta55AY.39.10.000198
ORF1ab/nsp248V48IGtaAta55AY.4.20.000108
ORF1ab/nsp248V48IGtaAta55AY.50.000103
ORF1ab/nsp248V48VgtAgtG45AY.610.000419
ORF1ab/nsp248V48VgtAgtT15AY.610.000105
ORF1ab/nsp248V48VgtAgtG55AY.980.000395
ORF1ab/nsp248V48delGTA---55B.1.1.330.002104
ORF1ab/nsp248V48delGTA---55B.1.1.70.000004
ORF1ab/nsp248V48VgtAgtG55B.1.2340.00066
ORF1ab/nsp248V48VgtAgtG55B.1.2430.000348
ORF1ab/nsp248V48AgTagCa55B.1.5260.000118
ORF1ab/nsp248V48IGtaAta55P.10.000079
ORF1ab/nsp248V48IGtaAta44AY.1030.000025
ORF1ab/nsp248V48LGtaTta44AY.1080.00441
ORF1ab/nsp248V48VgtAgtG44AY.1170.000338
ORF1ab/nsp248V48IGtaAta44AY.260.000113
ORF1ab/nsp248V48VgtAgtG44AY.270.000259
ORF1ab/nsp248V48LGtaTta44AY.470.000124
ORF1ab/nsp248V48VgtAgtG44AY.75.10.000721
ORF1ab/nsp248V48VgtAgtG44AZ.20.003284
ORF1ab/nsp248V48delGTA---44B.1.1.3480.003185
ORF1ab/nsp248V48VgtAgtG44B.1.1.4380.2
ORF1ab/nsp248V48VgtAgtG44B.1.1.5190.000159
ORF1ab/nsp248V48AgTagCa44B.1.1.70.000004
ORF1ab/nsp248V48VgtAgtG44B.1.5260.000094
ORF1ab/nsp248V48VgtAgtT230.111111
ORF1ab/nsp248V48VgtAgtG130.055556
ORF1ab/nsp248V48GgTagGa23All0
ORF1ab/nsp248V48GgTAgGT13All0
ORF1ab/nsp248V48LGtaTta33AY.100.00159
ORF1ab/nsp248V48LGtaTta33AY.30.00003
ORF1ab/nsp248V48VgtAgtG33AY.360.000445
ORF1ab/nsp248V48IGtaAta33AY.390.000074
ORF1ab/nsp248V48LGtaTta33AY.4.20.000065
ORF1ab/nsp248V48IGtaAta33AY.46.40.000494
ORF1ab/nsp248V48VgtAgtG33AY.60.000123
ORF1ab/nsp248V48AgTagCa33AY.610.000314
ORF1ab/nsp248V48IGtaAta33AY.720.004082
ORF1ab/nsp248V48IGtaAta33AY.840.001312
ORF1ab/nsp248V48VgtAgtG33AY.99.20.000276
ORF1ab/nsp248V48IGtaAta33B.10.000027
ORF1ab/nsp248V48LGtaTta23B.10.000018
ORF1ab/nsp248V48LGtaCta13B.10.000009
ORF1ab/nsp248V48IGtaAta33B.1.10.000054
ORF1ab/nsp248V48IGtaAta33B.1.1.5190.000119
ORF1ab/nsp248V48LGtaTta33B.1.4000.001287
ORF1ab/nsp248V48IGtaAta33P.1.70.000958
ORF1ab/nsp248V48FGtATtT220.111111
ORF1ab/nsp248V48LGtaTta220.111111
ORF1ab/nsp248V48AgTagCa120.055556
ORF1ab/nsp248V48GgTAgGT120.055556
ORF1ab/nsp248V48TGTAACG120.055556
ORF1ab/nsp248V48TGTaACa120.055556
ORF1ab/nsp248V48AgTAgCG120.055556
ORF1ab/nsp248V48GgTagGa120.055556
ORF1ab/nsp248V48FGtATtT22All0
ORF1ab/nsp248V48TGTAACG12All0
ORF1ab/nsp248V48XGTaTGa12All0
ORF1ab/nsp248V48XGTATAG12All0
ORF1ab/nsp248V48TGTaACa12All0
ORF1ab/nsp248V48VgtAgtG22AM.40.007143
ORF1ab/nsp248V48VgtAgtG22AY.1060.00067
ORF1ab/nsp248V48VgtAgtG22AY.1090.001479
ORF1ab/nsp248V48IGtaAta22AY.1130.000285
ORF1ab/nsp248V48IGtaAta22AY.1170.000169
ORF1ab/nsp248V48IGtaAta22AY.1190.000071
ORF1ab/nsp248V48AgTagCa22AY.200.000078
ORF1ab/nsp248V48IGtaAta22AY.230.000139
ORF1ab/nsp248V48VgtAgtG22AY.240.000862
ORF1ab/nsp248V48VgtAgtG22AY.250.000012
ORF1ab/nsp248V48AgTagCa22AY.290.000032
ORF1ab/nsp248V48IGtaAta22AY.29.10.000441
ORF1ab/nsp248V48IGtaAta22AY.39.10.000079
ORF1ab/nsp248V48VgtAgtG22AY.39.10.000079
ORF1ab/nsp248V48VgtAgtG22AY.4.20.000043
ORF1ab/nsp248V48VgtAgtG22AY.4.2.10.000298
ORF1ab/nsp248V48LGtaTta22AY.440.000012
ORF1ab/nsp248V48LGtaTta22AY.46.20.001271
ORF1ab/nsp248V48IGtaAta22AY.46.60.000144
ORF1ab/nsp248V48VgtAgtG22AY.540.000191
ORF1ab/nsp248V48LGtaTta22AY.750.000112
ORF1ab/nsp248V48VgtAgtG22AY.850.000854
ORF1ab/nsp248V48VgtAgtG22AY.9.20.000073
ORF1ab/nsp248V48AgTagCa22B.10.000018
ORF1ab/nsp248V48VgtAgtG22B.1.1.2140.000111
ORF1ab/nsp248V48VgtAgtG22B.1.1.280.000622
ORF1ab/nsp248V48VgtAgtT22B.1.1.4340.000697
ORF1ab/nsp248V48IGtaAta22B.1.177.600.000437
ORF1ab/nsp248V48VgtAgtG22B.1.177.740.030303
ORF1ab/nsp248V48VgtAgtG22B.1.2390.002442
ORF1ab/nsp248V48VgtAgtG22B.1.36.290.001035
ORF1ab/nsp248V48IGtaAta22B.1.5950.000522
ORF1ab/nsp248V48delGTA---22B.1.617.20.000008
ORF1ab/nsp248V48AgTagCa22B.1.617.20.000008
ORF1ab/nsp248V48VgtAgtG22C.370.000232
ORF1ab/nsp248V48delGTA---22N.40.008511
ORF1ab/nsp248V48delGTA---22N.60.014184
ORF1ab/nsp248V48delGTA---22P.20.000373
ORF1ab/nsp248V48XGTaTGa110.055556
ORF1ab/nsp248V48CGTATGT110.055556
ORF1ab/nsp248V48IGtaAta110.055556
ORF1ab/nsp248V48MGtAAtG110.055556
ORF1ab/nsp248V48delGTA---11A.2.20.001689
ORF1ab/nsp248V48VgtAgtG11AD.20.000219
ORF1ab/nsp248V48VgtAgtG11AE.70.083333
ORF1ab/nsp248V48CGTATGT11All0
ORF1ab/nsp248V48MGtAAtG11All0
ORF1ab/nsp248V48VgtAgtG11AY.1000.000046
ORF1ab/nsp248V48AgTagCa11AY.1030.000006
ORF1ab/nsp248V48IGtaAta11AY.1110.000183
ORF1ab/nsp248V48delGTA---11AY.1110.000183
ORF1ab/nsp248V48XGTATAG11AY.1170.000085
ORF1ab/nsp248V48IGtaAta11AY.1180.000063
ORF1ab/nsp248V48LGtaTta11AY.1180.000063
ORF1ab/nsp248V48LGtaTta11AY.1200.000037
ORF1ab/nsp248V48VgtAgtG11AY.230.00007
ORF1ab/nsp248V48AgTagCa11AY.23.10.000417
ORF1ab/nsp248V48LGtaTta11AY.240.000431
ORF1ab/nsp248V48delGTA---11AY.250.000006
ORF1ab/nsp248V48VgtAgtG11AY.280.00189
ORF1ab/nsp248V48IGtaAta11AY.290.000016
ORF1ab/nsp248V48LGtaTta11AY.29.10.000221
ORF1ab/nsp248V48VgtAgtG11AY.320.000532
ORF1ab/nsp248V48IGtaAta11AY.330.000067
ORF1ab/nsp248V48LGtaTta11AY.360.000148
ORF1ab/nsp248V48VgtAgtG11AY.370.000316
ORF1ab/nsp248V48delGTA---11AY.40.000002
ORF1ab/nsp248V48AgTagCa11AY.40.000002
ORF1ab/nsp248V48IGtaAta11AY.4.40.000409
ORF1ab/nsp248V48VgtAgtG11AY.4.50.000107
ORF1ab/nsp248V48VgtAgtG11AY.420.00004
ORF1ab/nsp248V48IGtaAta11AY.450.000122
ORF1ab/nsp248V48AgTagCa11AY.50.000021
ORF1ab/nsp248V48IGtaAta11AY.5.40.000277
ORF1ab/nsp248V48LGtaTta11AY.5.40.000277
ORF1ab/nsp248V48VgtAgtG11AY.5.40.000277
ORF1ab/nsp248V48VgtAgtG11AY.510.000909
ORF1ab/nsp248V48IGtaAta11AY.540.000095
ORF1ab/nsp248V48LGtaTta11AY.550.000917
ORF1ab/nsp248V48VgtAgtG11AY.590.00053
ORF1ab/nsp248V48VgtAgtG11AY.620.000436
ORF1ab/nsp248V48VgtAgtG11AY.630.000387
ORF1ab/nsp248V48VgtAgtG11AY.640.000595
ORF1ab/nsp248V48VgtAgtT11AY.680.000274
ORF1ab/nsp248V48LGtaTta11AY.680.000274
ORF1ab/nsp248V48VgtAgtG11AY.870.000833
ORF1ab/nsp248V48IGtaAta11AY.870.000833
ORF1ab/nsp248V48VgtAgtG11AY.90.000068
ORF1ab/nsp248V48VgtAgtG11AY.9.10.000084
ORF1ab/nsp248V48IGtaAta11AY.950.000761
ORF1ab/nsp248V48LGtaTta11AY.99.20.000092
ORF1ab/nsp248V48AgTagCa11B0.000128
ORF1ab/nsp248V48delGTA---11B.10.000009
ORF1ab/nsp248V48AgTagCa11B.1.10.000018
ORF1ab/nsp248V48VgtAgtG11B.1.1.10.000327
ORF1ab/nsp248V48LGtaTta11B.1.1.2070.001182
ORF1ab/nsp248V48VgtAgtG11B.1.1.2210.010101
ORF1ab/nsp248V48VgtAgtG11B.1.1.2840.000107
ORF1ab/nsp248V48VgtAgtG11B.1.1.2910.000742
ORF1ab/nsp248V48LGtaCta11B.1.1.3030.002762
ORF1ab/nsp248V48VgtAgtG11B.1.1.3060.000438
ORF1ab/nsp248V48IGtaAta11B.1.1.3170.000412
ORF1ab/nsp248V48VgtAgtG11B.1.1.3220.008772
ORF1ab/nsp248V48VgtAgtG11B.1.1.330.000421
ORF1ab/nsp248V48VgtAgtG11B.1.1.370.000193
ORF1ab/nsp248V48IGtaAta11B.1.1.3720.000689
ORF1ab/nsp248V48AgTagCa11B.1.1.3720.000689
ORF1ab/nsp248V48VgtAgtG11B.1.1.4200.001006
ORF1ab/nsp248V48delGTA---11B.1.1.4200.001006
ORF1ab/nsp248V48LGtaTta11B.1.1.4320.001266
ORF1ab/nsp248V48IGtaAta11B.1.1.5180.006329
ORF1ab/nsp248V48VgtAgtG11B.1.1.630.000386
ORF1ab/nsp248V48VgtAgtG11B.1.1.700.000341
ORF1ab/nsp248V48IGtaAta11B.1.1470.000756
ORF1ab/nsp248V48GgTagGa11B.1.1600.000031
ORF1ab/nsp248V48IGtaAta11B.1.160.280.002924
ORF1ab/nsp248V48IGtaAta11B.1.1770.000013
ORF1ab/nsp248V48VgtAgtG11B.1.177.160.000664
ORF1ab/nsp248V48VgtAgtC11B.1.177.190.001431
ORF1ab/nsp248V48VgtAgtG11B.1.177.210.000076
ORF1ab/nsp248V48IGtaAta11B.1.177.330.001645
ORF1ab/nsp248V48AgTagCa11B.1.177.730.000566
ORF1ab/nsp248V48delGTA---11B.1.177.830.001481
ORF1ab/nsp248V48LGtaTta11B.1.177.870.000728
ORF1ab/nsp248V48VgtAgtG11B.1.2210.000071
ORF1ab/nsp248V48IGtaAta11B.1.2400.000216
ORF1ab/nsp248V48IGtaAta11B.1.2580.000067
ORF1ab/nsp248V48VgtAgtG11B.1.258.170.000104
ORF1ab/nsp248V48VgtAgtG11B.1.3320.003497
ORF1ab/nsp248V48IGtaAta11B.1.360.000146
ORF1ab/nsp248V48VgtAgtG11B.1.36.180.00042
ORF1ab/nsp248V48VgtAgtG11B.1.3620.001541
ORF1ab/nsp248V48VgtAgtG11B.1.3670.000792
ORF1ab/nsp248V48VgtAgtG11B.1.3690.000285
ORF1ab/nsp248V48IGtaAta11B.1.3900.010638
ORF1ab/nsp248V48VgtAgtG11B.1.4090.000781
ORF1ab/nsp248V48VgtAgtG11B.1.4270.00005
ORF1ab/nsp248V48delGTA---11B.1.4290.000024
ORF1ab/nsp248V48IGtaAta11B.1.4290.000024
ORF1ab/nsp248V48LGtaTta11B.1.4290.000024
ORF1ab/nsp248V48LGtaTta11B.1.438.10.000107
ORF1ab/nsp248V48VgtAgtG11B.1.4560.003268
ORF1ab/nsp248V48VgtAgtG11B.1.4600.017857
ORF1ab/nsp248V48VgtAgtG11B.1.4700.001404
ORF1ab/nsp248V48VgtAgtG11B.1.4890.043478
ORF1ab/nsp248V48IGtaAta11B.1.5250.000113
ORF1ab/nsp248V48IGtaAta11B.1.5260.000024
ORF1ab/nsp248V48IGtaAta11B.1.5410.004425
ORF1ab/nsp248V48VgtAgtG11B.1.5500.013699
ORF1ab/nsp248V48IGtaAta11B.1.617.10.000129
ORF1ab/nsp248V48LGtaTta11B.1.617.10.000129
ORF1ab/nsp248V48delGTA---11B.1.617.30.002985
ORF1ab/nsp248V48IGtaAta11B.1.6210.000089
ORF1ab/nsp248V48LGtaCta11B.1.621.10.000506
ORF1ab/nsp248V48IGtaAta11B.1.6280.000352
ORF1ab/nsp248V48VgtAgtG11B.1.6370.000073
ORF1ab/nsp248V48VgtAgtG11B.400.000364
ORF1ab/nsp248V48delGTA---11C.350.000774
ORF1ab/nsp248V48VgtAgtG11C.360.000911
ORF1ab/nsp248V48AgTagCa11D.20.000075
ORF1ab/nsp248V48IGtaAta11D.20.000075
ORF1ab/nsp248V48LGtaTta11P.10.000016
ORF1ab/nsp248V48AgTagCa11P.10.000016
ORF1ab/nsp248V48IGtaAta11P.1.100.000269
ORF1ab/nsp248V48VgtAgtG11P.1.140.000048
ORF1ab/nsp248V48IGtaAta11P.1.140.000048
ORF1ab/nsp248V48LGtaTta11P.20.000187
ORF1ab/nsp248V48VgtAgtG11Q.70.001111