CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 479

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2479I479LI659LnonsynAttCtt78178112240-2242
ORF1ab/nsp2479I479II659IsynatTatC6735400.8023772240-2242
ORF1ab/nsp2479I479II659IsynatTatA6731330.1976232240-2242
ORF1ab/nsp2479I479VI659VnonsynAttGtt56856812240-2242
ORF1ab/nsp2479I479TI659TnonsynaTtaCt10010012240-2242
ORF1ab/nsp2479I479MI659MnonsynatTatG676712240-2242
ORF1ab/nsp2479I479delI659deldelATT---393912240-2242
ORF1ab/nsp2479I479FI659FnonsynAttTtt161612240-2242
ORF1ab/nsp2479I479SI659SnonsynaTtaGt850.6252240-2242
ORF1ab/nsp2479I479SI659SnonsynaTTaGC820.252240-2242
ORF1ab/nsp2479I479SI659SnonsynATtTCt810.1252240-2242
ORF1ab/nsp2479I479NI659NnonsynaTTaAC210.52240-2242
ORF1ab/nsp2479I479NI659NnonsynaTtaAt210.52240-2242

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2479I479LAttCtt781781All0.000149
ORF1ab/nsp2479I479IatTatC540673All0.000103
ORF1ab/nsp2479I479IatTatA133673All0.000025
ORF1ab/nsp2479I479VAttGtt568568All0.000109
ORF1ab/nsp2479I479IatTatC459477B.1.1.70.000411
ORF1ab/nsp2479I479IatTatA18477B.1.1.70.000016
ORF1ab/nsp2479I479LAttCtt388388B.1.617.20.001461
ORF1ab/nsp2479I479LAttCtt250250AY.430.001108
ORF1ab/nsp2479I479TaTtaCt100100All0.000019
ORF1ab/nsp2479I479VAttGtt9292AY.170.754098
ORF1ab/nsp2479I479VAttGtt8383AY.90.00561
ORF1ab/nsp2479I479IatTatA7480AY.1030.000459
ORF1ab/nsp2479I479IatTatC680AY.1030.000037
ORF1ab/nsp2479I479VAttGtt8080B.1.1.70.000072
ORF1ab/nsp2479I479VAttGtt7575AY.690.014
ORF1ab/nsp2479I479MatTatG6767All0.000013
ORF1ab/nsp2479I479VAttGtt4747AY.40.000073
ORF1ab/nsp2479I479MatTatG4242B.1.20.00037
ORF1ab/nsp2479I479delATT---3939All0.000007
ORF1ab/nsp2479I479TaTtaCt3737AY.1030.00023
ORF1ab/nsp2479I479LAttCtt3131AY.34.10.015808
ORF1ab/nsp2479I479LAttCtt3030AY.1020.000795
ORF1ab/nsp2479I479VAttGtt2626B.1.617.20.000098
ORF1ab/nsp2479I479VAttGtt2323AY.250.000138
ORF1ab/nsp2479I479VAttGtt2020AY.1030.000124
ORF1ab/nsp2479I479IatTatC1518B.1.617.20.000056
ORF1ab/nsp2479I479IatTatA318B.1.617.20.000011
ORF1ab/nsp2479I479FAttTtt1616All0.000003
ORF1ab/nsp2479I479LAttCtt1616AY.120.005057
ORF1ab/nsp2479I479IatTatC1314AY.430.000058
ORF1ab/nsp2479I479IatTatA114AY.430.000004
ORF1ab/nsp2479I479LAttCtt1414AY.440.000085
ORF1ab/nsp2479I479MatTatG1414B.10.000128
ORF1ab/nsp2479I479LAttCtt1212AY.390.000297
ORF1ab/nsp2479I479IatTatC611AY.250.000036
ORF1ab/nsp2479I479IatTatA511AY.250.00003
ORF1ab/nsp2479I479TaTtaCt1111B.1.617.20.000041
ORF1ab/nsp2479I479TaTtaCt1010B.1.1.3170.004117
ORF1ab/nsp2479I479VAttGtt1010P.10.000158
ORF1ab/nsp2479I479TaTtaCt99AY.470.00028
ORF1ab/nsp2479I479SaTtaGt58All0.000001
ORF1ab/nsp2479I479SaTTaGC28All0
ORF1ab/nsp2479I479SATtTCt18All0
ORF1ab/nsp2479I479delATT---77B.1.1.70.000006
ORF1ab/nsp2479I479VAttGtt77B.1.6370.000512
ORF1ab/nsp2479I479VAttGtt77C.370.000812
ORF1ab/nsp2479I479LAttCtt66B.1.1.70.000005
ORF1ab/nsp2479I479IatTatA66P.10.000095
ORF1ab/nsp2479I479IatTatC55AY.290.000079
ORF1ab/nsp2479I479VAttGtt55AY.30.00005
ORF1ab/nsp2479I479delATT---55B.10.000046
ORF1ab/nsp2479I479VAttGtt55B.10.000046
ORF1ab/nsp2479I479TaTtaCt55B.1.1.70.000004
ORF1ab/nsp2479I479VAttGtt55B.1.2580.000333
ORF1ab/nsp2479I479IatTatC34AY.40.000005
ORF1ab/nsp2479I479IatTatA14AY.40.000002
ORF1ab/nsp2479I479IatTatC44AY.450.000487
ORF1ab/nsp2479I479TaTtaCt44B.1.10.000073
ORF1ab/nsp2479I479IatTatA44B.1.1.2200.007435
ORF1ab/nsp2479I479VAttGtt44B.1.20.000035
ORF1ab/nsp2479I479IatTatA24B.1.20.000018
ORF1ab/nsp2479I479IatTatC24B.1.20.000018
ORF1ab/nsp2479I479VAttGtt44B.1.3510.000119
ORF1ab/nsp2479I479VAttGtt44D.20.0003
ORF1ab/nsp2479I479VAttGtt33A.2.50.001497
ORF1ab/nsp2479I479VAttGtt33AY.1090.002219
ORF1ab/nsp2479I479VAttGtt33AY.230.000209
ORF1ab/nsp2479I479VAttGtt33AY.430.000013
ORF1ab/nsp2479I479IatTatC23AY.440.000012
ORF1ab/nsp2479I479IatTatA13AY.440.000006
ORF1ab/nsp2479I479VAttGtt33AY.460.000312
ORF1ab/nsp2479I479LAttCtt33AY.460.000312
ORF1ab/nsp2479I479VAttGtt33AY.5.40.00083
ORF1ab/nsp2479I479LAttCtt33AY.980.000237
ORF1ab/nsp2479I479TaTtaCt33AY.99.20.000276
ORF1ab/nsp2479I479IatTatA23B.10.000018
ORF1ab/nsp2479I479IatTatC13B.10.000009
ORF1ab/nsp2479I479LAttCtt33B.1.1.280.000934
ORF1ab/nsp2479I479delATT---33B.1.1.330.001263
ORF1ab/nsp2479I479VAttGtt33B.1.1.4160.002715
ORF1ab/nsp2479I479VAttGtt33B.1.1.5210.016043
ORF1ab/nsp2479I479MatTatG33B.1.1.70.000003
ORF1ab/nsp2479I479IatTatC33B.1.2430.000209
ORF1ab/nsp2479I479IatTatA33B.1.3510.000089
ORF1ab/nsp2479I479IatTatC33B.1.3960.002117
ORF1ab/nsp2479I479TaTtaCt33B.1.4000.001287
ORF1ab/nsp2479I479IatTatA23B.1.6210.000177
ORF1ab/nsp2479I479IatTatC13B.1.6210.000089
ORF1ab/nsp2479I479VAttGtt22A.10.000564
ORF1ab/nsp2479I479NaTtaAt12All0
ORF1ab/nsp2479I479NaTTaAC12All0
ORF1ab/nsp2479I479LAttCtt22AY.1090.001479
ORF1ab/nsp2479I479TaTtaCt22AY.1180.000125
ORF1ab/nsp2479I479IatTatA22AY.130.000322
ORF1ab/nsp2479I479VAttGtt22AY.130.000322
ORF1ab/nsp2479I479IatTatC22AY.200.000078
ORF1ab/nsp2479I479FAttTtt22AY.250.000012
ORF1ab/nsp2479I479LAttCtt22AY.40.000003
ORF1ab/nsp2479I479VAttGtt22AY.420.00008
ORF1ab/nsp2479I479TaTtaCt22AY.430.000009
ORF1ab/nsp2479I479FAttTtt22AY.470.000062
ORF1ab/nsp2479I479LAttCtt22AY.5.40.000553
ORF1ab/nsp2479I479LAttCtt22AY.60.000082
ORF1ab/nsp2479I479LAttCtt22AY.840.000875
ORF1ab/nsp2479I479VAttGtt22AY.98.10.000097
ORF1ab/nsp2479I479FAttTtt22B.10.000018
ORF1ab/nsp2479I479VAttGtt22B.1.1.1700.002494
ORF1ab/nsp2479I479delATT---22B.1.1.3480.001592
ORF1ab/nsp2479I479SaTTaGC22B.1.1.70.000002
ORF1ab/nsp2479I479FAttTtt22B.1.1.70.000002
ORF1ab/nsp2479I479TaTtaCt22B.1.1.700.000682
ORF1ab/nsp2479I479IatTatC22B.1.160.80.002577
ORF1ab/nsp2479I479LAttCtt22B.1.1770.000026
ORF1ab/nsp2479I479VAttGtt22B.1.1770.000026
ORF1ab/nsp2479I479delATT---22B.1.4240.016129
ORF1ab/nsp2479I479VAttGtt22B.1.4270.000101
ORF1ab/nsp2479I479IatTatC22B.1.4290.000047
ORF1ab/nsp2479I479delATT---22B.1.4290.000047
ORF1ab/nsp2479I479IatTatA22B.1.5640.000852
ORF1ab/nsp2479I479MatTatG22B.1.617.20.000008
ORF1ab/nsp2479I479delATT---22B.1.617.20.000008
ORF1ab/nsp2479I479delATT---22N.60.014184
ORF1ab/nsp2479I479delATT---11A0.000387
ORF1ab/nsp2479I479TaTtaCt11A.10.000282
ORF1ab/nsp2479I479FAttTtt11A.20.000662
ORF1ab/nsp2479I479LAttCtt11A.20.000662
ORF1ab/nsp2479I479FAttTtt11A.2.40.003367
ORF1ab/nsp2479I479FAttTtt11A.2.50.000499
ORF1ab/nsp2479I479VAttGtt11A.50.001923
ORF1ab/nsp2479I479SaTtaGt11AD.20.000219
ORF1ab/nsp2479I479IatTatC11AE.50.018519
ORF1ab/nsp2479I479VAttGtt11AY.100.00053
ORF1ab/nsp2479I479TaTtaCt11AY.100.00053
ORF1ab/nsp2479I479MatTatG11AY.1000.000046
ORF1ab/nsp2479I479LAttCtt11AY.1010.00049
ORF1ab/nsp2479I479IatTatA11AY.1020.000027
ORF1ab/nsp2479I479MatTatG11AY.1030.000006
ORF1ab/nsp2479I479delATT---11AY.1080.001103
ORF1ab/nsp2479I479LAttCtt11AY.1080.001103
ORF1ab/nsp2479I479LAttCtt11AY.1170.000085
ORF1ab/nsp2479I479VAttGtt11AY.1170.000085
ORF1ab/nsp2479I479VAttGtt11AY.1200.000037
ORF1ab/nsp2479I479IatTatC11AY.120.10.000321
ORF1ab/nsp2479I479LAttCtt11AY.200.000039
ORF1ab/nsp2479I479LAttCtt11AY.250.000006
ORF1ab/nsp2479I479VAttGtt11AY.260.000028
ORF1ab/nsp2479I479VAttGtt11AY.290.000016
ORF1ab/nsp2479I479delATT---11AY.29.10.000221
ORF1ab/nsp2479I479IatTatC11AY.30.00001
ORF1ab/nsp2479I479LAttCtt11AY.30.00001
ORF1ab/nsp2479I479VAttGtt11AY.320.000532
ORF1ab/nsp2479I479VAttGtt11AY.330.000067
ORF1ab/nsp2479I479LAttCtt11AY.360.000148
ORF1ab/nsp2479I479MatTatG11AY.390.000025
ORF1ab/nsp2479I479VAttGtt11AY.390.000025
ORF1ab/nsp2479I479VAttGtt11AY.39.10.00004
ORF1ab/nsp2479I479delATT---11AY.40.000002
ORF1ab/nsp2479I479MatTatG11AY.40.000002
ORF1ab/nsp2479I479IatTatC11AY.4.20.000022
ORF1ab/nsp2479I479VAttGtt11AY.4.20.000022
ORF1ab/nsp2479I479LAttCtt11AY.4.2.10.000149
ORF1ab/nsp2479I479VAttGtt11AY.4.50.000107
ORF1ab/nsp2479I479VAttGtt11AY.440.000006
ORF1ab/nsp2479I479NaTtaAt11AY.440.000006
ORF1ab/nsp2479I479VAttGtt11AY.470.000031
ORF1ab/nsp2479I479VAttGtt11AY.50.000021
ORF1ab/nsp2479I479VAttGtt11AY.540.000095
ORF1ab/nsp2479I479VAttGtt11AY.550.000917
ORF1ab/nsp2479I479delATT---11AY.60.000041
ORF1ab/nsp2479I479VAttGtt11AY.650.000533
ORF1ab/nsp2479I479NaTTaAC11AY.670.000464
ORF1ab/nsp2479I479delATT---11AY.750.000056
ORF1ab/nsp2479I479VAttGtt11AY.750.000056
ORF1ab/nsp2479I479LAttCtt11AY.75.10.00018
ORF1ab/nsp2479I479TaTtaCt11AY.75.10.00018
ORF1ab/nsp2479I479MatTatG11AY.850.000427
ORF1ab/nsp2479I479IatTatC11AY.980.000079
ORF1ab/nsp2479I479VAttGtt11AY.980.000079
ORF1ab/nsp2479I479TaTtaCt11AY.98.10.000048
ORF1ab/nsp2479I479delATT---11AY.990.001049
ORF1ab/nsp2479I479SATtTCt11B.10.000009
ORF1ab/nsp2479I479TaTtaCt11B.10.000009
ORF1ab/nsp2479I479VAttGtt11B.1.10.000018
ORF1ab/nsp2479I479LAttCtt11B.1.10.000018
ORF1ab/nsp2479I479IatTatA11B.1.10.000018
ORF1ab/nsp2479I479FAttTtt11B.1.1.2140.000055
ORF1ab/nsp2479I479VAttGtt11B.1.1.2160.00089
ORF1ab/nsp2479I479TaTtaCt11B.1.1.250.000569
ORF1ab/nsp2479I479LAttCtt11B.1.1.3260.001761
ORF1ab/nsp2479I479VAttGtt11B.1.1.330.000421
ORF1ab/nsp2479I479IatTatC11B.1.1.3490.010309
ORF1ab/nsp2479I479TaTtaCt11B.1.1.3660.015873
ORF1ab/nsp2479I479SaTtaGt11B.1.1.370.000193
ORF1ab/nsp2479I479IatTatC11B.1.1.3720.000689
ORF1ab/nsp2479I479delATT---11B.1.1.4160.000905
ORF1ab/nsp2479I479SaTtaGt11B.1.1.700.000341
ORF1ab/nsp2479I479IatTatC11B.1.1600.000031
ORF1ab/nsp2479I479LAttCtt11B.1.1600.000031
ORF1ab/nsp2479I479IatTatA11B.1.1770.000013
ORF1ab/nsp2479I479VAttGtt11B.1.177.600.000218
ORF1ab/nsp2479I479IatTatA11B.1.177.820.000477
ORF1ab/nsp2479I479IatTatA11B.1.177.860.000183
ORF1ab/nsp2479I479delATT---11B.1.1790.003759
ORF1ab/nsp2479I479SaTtaGt11B.1.20.000009
ORF1ab/nsp2479I479TaTtaCt11B.1.20.000009
ORF1ab/nsp2479I479VAttGtt11B.1.2210.000071
ORF1ab/nsp2479I479IatTatC11B.1.351.30.000876
ORF1ab/nsp2479I479VAttGtt11B.1.36.290.000517
ORF1ab/nsp2479I479IatTatC11B.1.3620.001541
ORF1ab/nsp2479I479FAttTtt11B.1.3690.000285
ORF1ab/nsp2479I479SaTtaGt11B.1.3780.006849
ORF1ab/nsp2479I479TaTtaCt11B.1.3960.000706
ORF1ab/nsp2479I479VAttGtt11B.1.4290.000024
ORF1ab/nsp2479I479delATT---11B.1.5610.000397
ORF1ab/nsp2479I479FAttTtt11B.1.5810.009434
ORF1ab/nsp2479I479IatTatA11B.1.5960.000087
ORF1ab/nsp2479I479VAttGtt11B.1.6230.000536
ORF1ab/nsp2479I479MatTatG11B.1.6370.000073
ORF1ab/nsp2479I479VAttGtt11B.280.003279
ORF1ab/nsp2479I479TaTtaCt11B.40.002208
ORF1ab/nsp2479I479delATT---11B.570.015152
ORF1ab/nsp2479I479IatTatA11C.160.00106
ORF1ab/nsp2479I479TaTtaCt11C.350.000774
ORF1ab/nsp2479I479TaTtaCt11D.20.000075
ORF1ab/nsp2479I479delATT---11P.10.000016
ORF1ab/nsp2479I479FAttTtt11P.1.10.000318
ORF1ab/nsp2479I479VAttGtt11P.1.120.000484
ORF1ab/nsp2479I479VAttGtt11P.1.140.000048
ORF1ab/nsp2479I479delATT---11P.1.150.000232
ORF1ab/nsp2479I479FAttTtt11P.1.170.000162
ORF1ab/nsp2479I479IatTatC11P.1.170.000162
ORF1ab/nsp2479I479delATT---11P.20.000187
ORF1ab/nsp2479I479VAttGtt11P.20.000187
ORF1ab/nsp2479I479VAttGtt11Q.80.000165